Wall clock time and date at job start Tue Mar 31 2020 08:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99704 * 2 1 4 4 C 1.53005 * 109.47156 * 150.00279 * 3 2 1 5 5 C 1.52995 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46842 * 299.99938 * 5 4 3 7 7 C 1.50702 * 109.46954 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99831 * 326.53897 * 7 6 5 9 9 N 1.34775 * 120.00181 * 146.53889 * 7 6 5 10 10 C 1.46501 * 119.99755 * 3.96495 * 9 7 6 11 11 C 1.50702 * 109.47060 * 84.11648 * 10 9 7 12 12 H 1.08000 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99633 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00693 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99549 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47464 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47168 * 120.00208 * 15 13 11 18 18 H 1.48496 * 109.47558 * 239.99959 * 15 13 11 19 19 C 1.46502 * 120.00145 * 183.96834 * 9 7 6 20 20 C 1.53000 * 109.46657 * 271.35954 * 19 9 7 21 21 C 1.53001 * 117.49920 * 243.61899 * 20 19 9 22 22 C 1.53002 * 117.49454 * 174.99546 * 20 19 9 23 23 C 1.52998 * 109.47145 * 60.00370 * 6 5 4 24 24 C 1.52998 * 109.47280 * 270.00008 * 3 2 1 25 25 H 1.08998 * 109.46607 * 299.99574 * 1 2 3 26 26 H 1.08998 * 109.47293 * 60.00166 * 1 2 3 27 27 H 1.08994 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47456 * 30.00116 * 3 2 1 29 29 H 1.08999 * 109.47072 * 59.99601 * 4 3 2 30 30 H 1.09007 * 109.46739 * 300.00317 * 4 3 2 31 31 H 1.09000 * 109.46988 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47454 * 59.99714 * 5 4 3 33 33 H 1.08993 * 109.47270 * 299.99861 * 6 5 4 34 34 H 1.08995 * 109.47156 * 324.11525 * 10 9 7 35 35 H 1.09005 * 109.46686 * 204.11383 * 10 9 7 36 36 H 0.96999 * 120.00426 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47060 * 31.36131 * 19 9 7 38 38 H 1.09000 * 109.47161 * 151.36474 * 19 9 7 39 39 H 1.08995 * 115.55187 * 29.33561 * 20 19 9 40 40 H 1.08991 * 117.49634 * 0.02562 * 21 20 19 41 41 H 1.08996 * 117.49373 * 145.02673 * 21 20 19 42 42 H 1.09004 * 117.50105 * 214.97497 * 22 20 19 43 43 H 1.08999 * 117.50341 * 0.02562 * 22 20 19 44 44 H 1.08993 * 109.47453 * 59.99602 * 23 6 5 45 45 H 1.09002 * 109.46787 * 180.02562 * 23 6 5 46 46 H 1.09001 * 109.47556 * 299.99949 * 24 3 2 47 47 H 1.09000 * 109.47301 * 60.00205 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3590 1.2634 0.7212 5 6 3.9809 2.6612 0.7218 6 6 4.1882 3.1277 -0.7206 7 6 4.8014 4.5043 -0.7200 8 8 4.5193 5.2935 0.1567 9 7 5.6634 4.8585 -1.6937 10 6 5.9376 3.9378 -2.7997 11 6 4.8750 4.0923 -3.8572 12 1 4.0757 4.8053 -3.7193 13 6 4.9240 3.3241 -5.0010 14 7 5.8981 2.4569 -5.1696 15 14 3.6065 3.5151 -6.3114 16 1 2.6302 4.5496 -5.8847 17 1 4.2371 3.9281 -7.5909 18 1 2.9050 2.2200 -6.5007 19 6 6.3261 6.1642 -1.6460 20 6 5.4540 7.2047 -2.3514 21 6 6.0205 7.8652 -3.6099 22 6 5.9181 8.6620 -2.3077 23 6 2.8395 3.1700 -1.4417 24 6 2.2176 1.7714 -1.4425 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.3450 1.9994 0.5138 29 1 4.0242 0.5694 0.2074 30 1 3.2112 0.9313 1.7489 31 1 4.9416 2.6312 1.2360 32 1 3.3155 3.3548 1.2359 33 1 4.8536 2.4342 -1.2347 34 1 5.9345 2.9130 -2.4286 35 1 6.9132 4.1659 -3.2290 36 1 5.9323 1.9162 -5.9742 37 1 6.4745 6.4586 -0.6071 38 1 7.2920 6.0999 -2.1471 39 1 4.3807 7.0173 -2.3207 40 1 7.0143 7.5581 -3.9355 41 1 5.3198 8.1122 -4.4074 42 1 5.1501 9.4333 -2.2487 43 1 6.8449 8.8794 -1.7768 44 1 2.1741 3.8634 -0.9276 45 1 2.9873 3.5019 -2.4694 46 1 2.8829 1.0776 -1.9564 47 1 1.2568 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614822497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:28 Heat of formation + Delta-G solvation = -92.266558 kcal Electronic energy + Delta-G solvation = -25480.371581 eV Core-core repulsion = 22048.591685 eV Total energy + Delta-G solvation = -3431.779896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32344 -39.70814 -38.28753 -36.95425 -36.35322 -34.38181 -31.79975 -31.38997 -29.56783 -27.96372 -27.11619 -24.95251 -23.77051 -23.53853 -23.16945 -21.78903 -21.01672 -19.71913 -18.49328 -17.91277 -17.60624 -17.35846 -16.64293 -16.36613 -16.06115 -15.92533 -15.78923 -15.02979 -14.69678 -14.60010 -14.40878 -14.20802 -13.95080 -13.61746 -13.37584 -13.20219 -13.04670 -12.96721 -12.85176 -12.69901 -12.53876 -12.32003 -12.28701 -12.10031 -11.92062 -11.85458 -11.58156 -11.42341 -11.29276 -11.26328 -10.75471 -10.61973 -10.36757 -10.33672 -9.43507 -8.15617 -6.24715 1.37662 1.42572 1.50539 1.77866 2.31170 2.45057 2.82951 3.02146 3.15979 3.70082 3.74207 3.80648 3.92735 4.06671 4.15264 4.16502 4.24779 4.29669 4.39863 4.44299 4.48617 4.53999 4.55937 4.60983 4.72243 4.76589 4.81182 4.82430 4.85937 4.91255 4.95966 5.04467 5.06768 5.11391 5.21181 5.25099 5.27225 5.29028 5.31624 5.44815 5.47436 5.72438 5.91196 6.12879 6.31909 6.60247 6.88106 7.35709 7.47399 8.90867 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.006025 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.880460 B = 4646.239886 C = 6203.770215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.093 3.907 4 C -0.106 4.106 5 C -0.090 4.090 6 C -0.097 4.097 7 C 0.518 3.482 8 O -0.593 6.593 9 N -0.597 5.597 10 C 0.253 3.747 11 C -0.515 4.515 12 H 0.052 0.948 13 C 0.027 3.973 14 N -0.920 5.920 15 Si 0.939 3.061 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.280 1.280 19 C 0.151 3.849 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.158 4.158 23 C -0.100 4.100 24 C -0.128 4.128 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 0.898 8.117 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.036 3.964 4 C -0.144 4.144 5 C -0.128 4.128 6 C -0.119 4.119 7 C 0.308 3.692 8 O -0.475 6.475 9 N -0.326 5.326 10 C 0.132 3.868 11 C -0.553 4.553 12 H 0.070 0.930 13 C -0.173 4.173 14 N -0.560 5.560 15 Si 0.766 3.234 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.206 1.206 19 C 0.028 3.972 20 C -0.189 4.189 21 C -0.209 4.209 22 C -0.195 4.195 23 C -0.138 4.138 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.146 1.002 8.420 9.919 hybrid contribution -0.677 0.168 -1.375 1.542 sum -5.823 1.170 7.045 9.215 Atomic orbital electron populations 1.22966 0.79962 1.03720 1.00602 1.87870 1.21129 1.28284 1.95149 1.22158 0.95235 0.84174 0.94841 1.21517 0.95051 0.96437 1.01396 1.21299 1.01563 0.96187 0.93738 1.21256 0.98398 0.93376 0.98821 1.20876 0.78162 0.89881 0.80274 1.90554 1.62756 1.54671 1.39543 1.48250 1.42816 1.17483 1.24039 1.19144 0.96031 0.88253 0.83379 1.21474 1.10119 1.20825 1.02917 0.93012 1.25449 0.97268 0.94936 0.99623 1.69994 1.32936 1.24662 1.28370 0.85785 0.79945 0.77975 0.79713 1.19602 1.20789 1.20573 1.20959 0.94477 0.81659 1.00092 1.22446 0.98783 0.94803 1.02851 1.22951 1.02359 1.04067 0.91475 1.23026 1.03583 0.92712 1.00227 1.21374 0.93859 0.97156 1.01379 1.21914 1.00994 0.96037 0.97693 0.92885 0.93977 0.88342 0.91145 0.91619 0.89475 0.91177 0.91223 0.89641 0.95362 0.96164 0.92616 0.90781 0.90163 0.90931 0.88601 0.89464 0.88093 0.87251 0.92268 0.91093 0.92363 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.82 113.37 1.23 1.69 16 2 O -0.40 -11.01 10.35 -148.98 -1.54 -12.55 16 3 C 0.09 2.55 2.61 30.60 0.08 2.63 16 4 C -0.11 -2.85 5.57 30.59 0.17 -2.68 16 5 C -0.09 -2.73 4.84 30.59 0.15 -2.58 16 6 C -0.10 -3.58 1.95 -11.54 -0.02 -3.60 16 7 C 0.52 21.49 6.63 87.66 0.58 22.07 16 8 O -0.59 -26.37 15.88 -3.07 -0.05 -26.42 16 9 N -0.60 -24.95 2.47 -826.14 -2.04 -26.99 16 10 C 0.25 11.80 5.00 85.63 0.43 12.23 16 11 C -0.51 -25.70 7.52 25.60 0.19 -25.51 16 12 H 0.05 2.68 7.35 -2.91 -0.02 2.65 16 13 C 0.03 1.40 5.46 84.66 0.46 1.86 16 14 N -0.92 -49.83 13.29 21.45 0.28 -49.55 16 15 Si 0.94 41.56 29.54 68.60 2.03 43.59 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.15 5.54 5.69 86.38 0.49 6.03 16 20 C -0.17 -5.98 6.01 -10.79 -0.06 -6.04 16 21 C -0.17 -5.32 10.18 30.60 0.31 -5.01 16 22 C -0.16 -4.26 10.25 30.60 0.31 -3.95 16 23 C -0.10 -3.58 5.19 30.61 0.16 -3.43 16 24 C -0.13 -4.07 5.54 30.61 0.17 -3.90 16 25 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 26 H 0.04 0.81 7.87 -2.39 -0.02 0.79 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 33 H 0.09 3.39 5.85 -2.39 -0.01 3.38 16 34 H 0.03 1.39 5.93 -2.39 -0.01 1.38 16 35 H 0.02 1.00 7.81 -2.38 -0.02 0.99 16 36 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 37 H 0.07 2.65 7.52 -2.39 -0.02 2.63 16 38 H 0.08 2.74 7.57 -2.39 -0.02 2.73 16 39 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.10 2.89 8.03 -2.39 -0.02 2.87 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.97 5.66 -2.39 -0.01 2.96 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 2.03 7.87 -2.39 -0.02 2.01 16 Total: -1.00 -58.58 371.04 4.25 -54.33 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.92 Total: 27.77 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.65 Total: -10.18 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.76 Total: -76.53 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.59 Total: -38.97 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -58.58 4.25 -54.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614822497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.938 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds