Wall clock time and date at job start Tue Mar 31 2020 08:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00604 * 2 1 4 4 C 1.52998 * 109.47197 * 210.00184 * 3 2 1 5 5 C 1.52998 * 109.47073 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47506 * 59.99590 * 5 4 3 7 7 C 1.50699 * 109.46891 * 60.00221 * 6 5 4 8 8 O 1.21297 * 120.00297 * 355.06173 * 7 6 5 9 9 N 1.34778 * 119.99917 * 175.06579 * 7 6 5 10 10 C 1.37094 * 119.99873 * 3.68651 * 9 7 6 11 11 H 1.08004 * 119.99828 * 124.57757 * 10 9 7 12 12 C 1.38951 * 120.00184 * 304.57475 * 10 9 7 13 13 N 1.31413 * 119.99983 * 337.67739 * 12 10 9 14 14 Si 1.86802 * 120.00050 * 157.67900 * 12 10 9 15 15 H 1.48494 * 109.47058 * 60.00165 * 14 12 10 16 16 H 1.48501 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46666 * 299.99850 * 14 12 10 18 18 C 1.46502 * 119.99972 * 183.69407 * 9 7 6 19 19 C 1.54957 * 110.92530 * 126.53565 * 18 9 7 20 20 C 1.54267 * 104.16134 * 156.29402 * 19 18 9 21 21 C 1.53879 * 106.63998 * 336.44688 * 20 19 18 22 22 C 1.54269 * 106.59598 * 359.97172 * 21 20 19 23 23 C 1.52993 * 109.47011 * 300.00429 * 6 5 4 24 24 C 1.52993 * 109.47617 * 59.99647 * 23 6 5 25 25 H 1.08993 * 109.47949 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47035 * 300.00407 * 1 2 3 27 27 H 1.09003 * 109.46934 * 59.99998 * 1 2 3 28 28 H 1.09005 * 109.46828 * 329.99755 * 3 2 1 29 29 H 1.08995 * 109.47400 * 59.99486 * 4 3 2 30 30 H 1.09005 * 109.46882 * 299.99538 * 4 3 2 31 31 H 1.09005 * 109.46831 * 299.99497 * 5 4 3 32 32 H 1.09006 * 109.46950 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47221 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00028 * 176.95999 * 13 12 10 35 35 H 1.08999 * 110.67561 * 3.22463 * 18 9 7 36 36 H 1.09002 * 110.48052 * 37.64100 * 19 18 9 37 37 H 1.08994 * 110.53109 * 274.97135 * 19 18 9 38 38 H 1.08997 * 110.03594 * 217.13469 * 20 19 18 39 39 H 1.08999 * 110.03763 * 95.75328 * 20 19 18 40 40 H 1.08996 * 110.03807 * 119.25868 * 21 20 19 41 41 H 1.09003 * 110.03384 * 240.64523 * 21 20 19 42 42 H 1.09004 * 110.48583 * 142.28642 * 22 21 20 43 43 H 1.08995 * 110.48936 * 264.80034 * 22 21 20 44 44 H 1.09004 * 109.47261 * 180.02562 * 23 6 5 45 45 H 1.09006 * 109.47175 * 299.99363 * 23 6 5 46 46 H 1.09000 * 109.47601 * 180.02562 * 24 23 6 47 47 H 1.09006 * 109.47080 * 59.99658 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 3.9816 2.6606 -0.7207 6 6 4.1892 3.1260 0.7219 7 6 5.1087 2.1661 1.4320 8 8 5.4826 1.1574 0.8715 9 7 5.5155 2.4283 2.6898 10 6 5.0337 3.5286 3.3508 11 1 4.5540 3.4141 4.3116 12 6 5.1625 4.7909 2.7845 13 7 6.0889 5.0136 1.8794 14 14 4.0189 6.1713 3.3098 15 1 4.1728 6.4143 4.7666 16 1 4.3601 7.4083 2.5623 17 1 2.6142 5.7886 3.0173 18 6 6.4728 1.5378 3.3508 19 6 7.6894 2.3333 3.8874 20 6 8.2480 1.4492 5.0215 21 6 7.0867 0.5602 5.4998 22 6 5.8618 0.9351 4.6402 23 6 2.8406 3.1682 1.4431 24 6 2.2178 1.7708 1.4426 25 1 -0.3635 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.3451 1.9993 -0.5139 29 1 3.2112 0.9311 -1.7489 30 1 4.0242 0.5691 -0.2074 31 1 3.3166 3.3549 -1.2343 32 1 4.9423 2.6305 -1.2350 33 1 4.6324 4.1218 0.7223 34 1 6.1505 5.8822 1.4520 35 1 6.7968 0.7491 2.6717 36 1 7.3708 3.2995 4.2787 37 1 8.4356 2.4653 3.1040 38 1 8.6025 2.0736 5.8416 39 1 9.0622 0.8297 4.6456 40 1 7.3368 -0.4908 5.3551 41 1 6.8781 0.7525 6.5522 42 1 5.2745 0.0473 4.4052 43 1 5.2464 1.6733 5.1543 44 1 2.9883 3.5002 2.4708 45 1 2.1755 3.8626 0.9296 46 1 1.2568 1.8010 1.9561 47 1 2.8829 1.0764 1.9562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614838518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:31 Heat of formation + Delta-G solvation = -97.211577 kcal Electronic energy + Delta-G solvation = -26535.071730 eV Core-core repulsion = 23103.077402 eV Total energy + Delta-G solvation = -3431.994328 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72012 -38.09978 -36.86635 -34.94411 -34.30713 -31.49510 -30.00875 -29.43493 -27.93244 -26.97864 -26.09863 -24.91463 -22.23583 -21.90053 -20.46032 -19.64746 -19.45114 -18.68526 -16.30454 -16.18440 -15.80296 -15.33354 -14.89328 -14.73109 -14.66742 -14.42083 -14.08734 -13.30372 -13.19724 -12.79332 -12.61619 -12.43211 -12.39768 -11.83316 -11.73211 -11.61134 -11.48248 -11.29529 -11.12886 -10.95369 -10.68696 -10.63306 -10.54480 -10.38290 -10.33023 -10.31102 -9.93257 -9.84041 -9.79776 -9.69982 -9.60526 -8.87492 -8.65718 -7.98162 -7.18813 -6.41414 -4.22354 3.08989 3.17281 3.19220 4.03342 4.12456 4.18896 4.82610 4.84338 5.29287 5.36475 5.37900 5.42473 5.50186 5.53898 5.55181 5.70175 5.76122 5.91450 5.95610 6.10524 6.14530 6.18720 6.21367 6.23644 6.25744 6.26990 6.33111 6.44921 6.54184 6.54985 6.59822 6.67573 6.70917 6.73117 6.92583 6.95594 7.00978 7.09521 7.16898 7.23897 7.29700 7.38747 7.44181 7.65174 8.05349 8.66207 8.92337 9.65515 10.09183 10.59996 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.007036 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.175797 B = 3978.384648 C = 5043.960749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.093 3.907 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.104 4.104 7 C 0.527 3.473 8 O -0.605 6.605 9 N -0.447 5.447 10 C -0.332 4.332 11 H 0.080 0.920 12 C 0.056 3.944 13 N -0.848 5.848 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.134 3.866 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.270 0.730 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -2.636 0.885 6.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.036 3.964 4 C -0.166 4.166 5 C -0.130 4.130 6 C -0.125 4.125 7 C 0.318 3.682 8 O -0.491 6.491 9 N -0.165 5.165 10 C -0.459 4.459 11 H 0.098 0.902 12 C -0.151 4.151 13 N -0.483 5.483 14 Si 0.714 3.286 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.030 3.970 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.167 4.167 23 C -0.147 4.147 24 C -0.172 4.172 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.060 -3.130 0.544 5.974 hybrid contribution -0.717 1.237 0.267 1.454 sum -5.777 -1.893 0.811 6.133 Atomic orbital electron populations 1.22690 0.82381 1.01898 0.99462 1.87925 1.18524 1.29080 1.95093 1.22261 0.94978 0.82964 0.96192 1.21893 0.95401 0.99834 0.99455 1.21278 1.00000 0.95149 0.96594 1.21381 0.95552 1.02479 0.93071 1.20195 0.80870 0.85027 0.82134 1.90393 1.61473 1.29755 1.67430 1.43209 1.37801 1.22998 1.12521 1.18976 1.36635 0.83875 1.06462 0.90249 1.25521 0.94894 0.97987 0.96659 1.70062 1.27519 1.24171 1.26544 0.86640 0.81800 0.80833 0.79298 1.19667 1.20837 1.18948 1.21894 0.89479 0.92848 0.92793 1.22474 0.96874 0.99730 0.96398 1.22091 0.97385 0.97991 0.98592 1.22036 0.95853 0.98837 0.98955 1.22593 0.97026 1.00073 0.97026 1.21593 0.94521 0.94950 1.03593 1.21995 1.00383 0.98504 0.96325 0.90318 0.94435 0.94658 0.93421 0.93307 0.87181 0.93273 0.91790 0.86387 0.91967 0.90215 0.89834 0.92848 0.92676 0.92874 0.92729 0.92658 0.92850 0.90942 0.88282 0.93500 0.93124 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.39 -6.85 10.35 -35.23 -0.36 -7.21 16 3 C 0.09 1.67 2.61 -26.73 -0.07 1.60 16 4 C -0.13 -2.51 5.28 -26.73 -0.14 -2.65 16 5 C -0.09 -1.82 5.12 -26.73 -0.14 -1.96 16 6 C -0.10 -2.27 2.12 -91.78 -0.19 -2.47 16 7 C 0.53 12.83 5.19 -10.99 -0.06 12.78 16 8 O -0.60 -15.85 12.88 5.54 0.07 -15.78 16 9 N -0.45 -10.56 2.45 -105.58 -0.26 -10.82 16 10 C -0.33 -7.75 5.04 -14.93 -0.08 -7.83 16 11 H 0.08 1.84 6.99 -52.48 -0.37 1.47 16 12 C 0.06 1.31 3.13 -17.47 -0.05 1.26 16 13 N -0.85 -21.07 11.62 55.50 0.64 -20.43 16 14 Si 0.89 18.19 28.46 -169.99 -4.84 13.35 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.26 -5.23 7.10 56.52 0.40 -4.83 16 18 C 0.13 2.92 3.28 -65.90 -0.22 2.70 16 19 C -0.12 -2.36 6.36 -25.03 -0.16 -2.52 16 20 C -0.12 -2.01 6.80 -25.61 -0.17 -2.18 16 21 C -0.12 -1.87 6.80 -25.61 -0.17 -2.05 16 22 C -0.13 -2.41 6.39 -25.07 -0.16 -2.57 16 23 C -0.11 -2.16 4.92 -26.74 -0.13 -2.29 16 24 C -0.13 -2.53 5.32 -26.74 -0.14 -2.67 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.46 7.87 -51.93 -0.41 0.05 16 27 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 2.51 5.33 -51.93 -0.28 2.24 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.12 2.78 4.80 -51.93 -0.25 2.53 16 34 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 35 H 0.08 1.87 7.01 -51.93 -0.36 1.50 16 36 H 0.08 1.86 7.10 -51.93 -0.37 1.49 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.40 6.74 -51.93 -0.35 1.05 16 44 H 0.10 2.08 4.48 -51.93 -0.23 1.85 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 47 H 0.07 1.54 7.22 -51.93 -0.37 1.17 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -26.45 345.40 -8.34 -34.79 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.01 Total: 10.21 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.79 Total: -9.32 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.39 Total: -31.25 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.29 Total: -22.99 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.84 Total: 13.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.45 -8.34 -34.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614838518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.417 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds