Wall clock time and date at job start Tue Mar 31 2020 08:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00604 * 2 1 4 4 C 1.52998 * 109.47197 * 210.00184 * 3 2 1 5 5 C 1.52998 * 109.47073 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47506 * 59.99590 * 5 4 3 7 7 C 1.50699 * 109.46891 * 60.00221 * 6 5 4 8 8 O 1.21297 * 120.00297 * 355.06173 * 7 6 5 9 9 N 1.34778 * 119.99917 * 175.06579 * 7 6 5 10 10 C 1.37094 * 119.99873 * 3.68651 * 9 7 6 11 11 H 1.08004 * 119.99828 * 124.57757 * 10 9 7 12 12 C 1.38951 * 120.00184 * 304.57475 * 10 9 7 13 13 N 1.31413 * 119.99983 * 337.67739 * 12 10 9 14 14 Si 1.86802 * 120.00050 * 157.67900 * 12 10 9 15 15 H 1.48494 * 109.47058 * 60.00165 * 14 12 10 16 16 H 1.48501 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46666 * 299.99850 * 14 12 10 18 18 C 1.46502 * 119.99972 * 183.69407 * 9 7 6 19 19 C 1.54957 * 110.92530 * 126.53565 * 18 9 7 20 20 C 1.54267 * 104.16134 * 156.29402 * 19 18 9 21 21 C 1.53879 * 106.63998 * 336.44688 * 20 19 18 22 22 C 1.54269 * 106.59598 * 359.97172 * 21 20 19 23 23 C 1.52993 * 109.47011 * 300.00429 * 6 5 4 24 24 C 1.52993 * 109.47617 * 59.99647 * 23 6 5 25 25 H 1.08993 * 109.47949 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47035 * 300.00407 * 1 2 3 27 27 H 1.09003 * 109.46934 * 59.99998 * 1 2 3 28 28 H 1.09005 * 109.46828 * 329.99755 * 3 2 1 29 29 H 1.08995 * 109.47400 * 59.99486 * 4 3 2 30 30 H 1.09005 * 109.46882 * 299.99538 * 4 3 2 31 31 H 1.09005 * 109.46831 * 299.99497 * 5 4 3 32 32 H 1.09006 * 109.46950 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47221 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00028 * 176.95999 * 13 12 10 35 35 H 1.08999 * 110.67561 * 3.22463 * 18 9 7 36 36 H 1.09002 * 110.48052 * 37.64100 * 19 18 9 37 37 H 1.08994 * 110.53109 * 274.97135 * 19 18 9 38 38 H 1.08997 * 110.03594 * 217.13469 * 20 19 18 39 39 H 1.08999 * 110.03763 * 95.75328 * 20 19 18 40 40 H 1.08996 * 110.03807 * 119.25868 * 21 20 19 41 41 H 1.09003 * 110.03384 * 240.64523 * 21 20 19 42 42 H 1.09004 * 110.48583 * 142.28642 * 22 21 20 43 43 H 1.08995 * 110.48936 * 264.80034 * 22 21 20 44 44 H 1.09004 * 109.47261 * 180.02562 * 23 6 5 45 45 H 1.09006 * 109.47175 * 299.99363 * 23 6 5 46 46 H 1.09000 * 109.47601 * 180.02562 * 24 23 6 47 47 H 1.09006 * 109.47080 * 59.99658 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 3.9816 2.6606 -0.7207 6 6 4.1892 3.1260 0.7219 7 6 5.1087 2.1661 1.4320 8 8 5.4826 1.1574 0.8715 9 7 5.5155 2.4283 2.6898 10 6 5.0337 3.5286 3.3508 11 1 4.5540 3.4141 4.3116 12 6 5.1625 4.7909 2.7845 13 7 6.0889 5.0136 1.8794 14 14 4.0189 6.1713 3.3098 15 1 4.1728 6.4143 4.7666 16 1 4.3601 7.4083 2.5623 17 1 2.6142 5.7886 3.0173 18 6 6.4728 1.5378 3.3508 19 6 7.6894 2.3333 3.8874 20 6 8.2480 1.4492 5.0215 21 6 7.0867 0.5602 5.4998 22 6 5.8618 0.9351 4.6402 23 6 2.8406 3.1682 1.4431 24 6 2.2178 1.7708 1.4426 25 1 -0.3635 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.3451 1.9993 -0.5139 29 1 3.2112 0.9311 -1.7489 30 1 4.0242 0.5691 -0.2074 31 1 3.3166 3.3549 -1.2343 32 1 4.9423 2.6305 -1.2350 33 1 4.6324 4.1218 0.7223 34 1 6.1505 5.8822 1.4520 35 1 6.7968 0.7491 2.6717 36 1 7.3708 3.2995 4.2787 37 1 8.4356 2.4653 3.1040 38 1 8.6025 2.0736 5.8416 39 1 9.0622 0.8297 4.6456 40 1 7.3368 -0.4908 5.3551 41 1 6.8781 0.7525 6.5522 42 1 5.2745 0.0473 4.4052 43 1 5.2464 1.6733 5.1543 44 1 2.9883 3.5002 2.4708 45 1 2.1755 3.8626 0.9296 46 1 1.2568 1.8010 1.9561 47 1 2.8829 1.0764 1.9562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614838518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:31 Heat of formation + Delta-G solvation = -110.926604 kcal Electronic energy + Delta-G solvation = -26535.666458 eV Core-core repulsion = 23103.077402 eV Total energy + Delta-G solvation = -3432.589056 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42522 -39.59413 -38.39109 -36.58875 -36.04508 -33.30100 -31.56469 -30.95614 -29.46438 -28.52704 -27.29720 -26.71076 -23.83119 -23.44868 -22.02059 -21.31969 -20.98245 -20.36146 -18.04001 -17.64594 -17.44496 -16.95528 -16.48341 -16.22073 -16.08616 -15.96170 -15.63071 -14.90845 -14.67038 -14.38248 -14.19471 -14.05222 -13.94016 -13.44179 -13.25076 -13.14641 -13.09315 -12.87917 -12.60299 -12.51906 -12.20850 -12.18162 -12.03781 -11.99240 -11.88782 -11.86694 -11.49726 -11.36636 -11.32475 -11.22418 -11.16476 -10.45694 -10.27313 -9.83394 -9.03373 -8.23216 -6.09603 1.46337 1.51718 1.57259 2.27454 2.38360 2.87230 3.03448 3.14060 3.86226 3.89561 3.91424 3.94122 4.12215 4.23056 4.31434 4.36021 4.51418 4.57011 4.58043 4.59737 4.66148 4.68082 4.70819 4.71982 4.79121 4.81136 4.85314 4.91715 5.03621 5.04439 5.06959 5.16048 5.16429 5.22220 5.36112 5.38076 5.42113 5.47772 5.52640 5.56399 5.63719 5.64309 5.74472 6.21590 6.39865 6.80997 7.09373 7.79134 8.24923 8.79166 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.007036 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.175797 B = 3978.384648 C = 5043.960749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.100 3.900 4 C -0.125 4.125 5 C -0.089 4.089 6 C -0.103 4.103 7 C 0.511 3.489 8 O -0.636 6.636 9 N -0.452 5.452 10 C -0.336 4.336 11 H 0.080 0.920 12 C 0.030 3.970 13 N -0.881 5.881 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.247 1.247 18 C 0.120 3.880 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.105 4.105 24 C -0.127 4.127 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.270 0.730 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 -2.217 1.768 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.043 3.957 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.124 4.124 7 C 0.303 3.697 8 O -0.524 6.524 9 N -0.170 5.170 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.174 4.174 13 N -0.517 5.517 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.171 1.171 18 C 0.016 3.984 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.142 4.142 24 C -0.165 4.165 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.091 -2.719 1.453 7.732 hybrid contribution -0.052 1.051 -0.025 1.053 sum -7.144 -1.667 1.428 7.473 Atomic orbital electron populations 1.22969 0.79856 1.03629 1.00748 1.87895 1.21328 1.28847 1.95197 1.22119 0.94482 0.83897 0.95246 1.21758 0.95880 0.98535 1.00070 1.21259 0.99842 0.96197 0.95421 1.21363 0.96108 1.00686 0.94274 1.20773 0.81256 0.85208 0.82478 1.90375 1.62734 1.31159 1.68156 1.43420 1.37740 1.23259 1.12624 1.19087 1.36766 0.84014 1.06504 0.90199 1.26089 0.95484 0.99563 0.96280 1.70158 1.28981 1.24703 1.27816 0.85819 0.80926 0.77988 0.78786 1.19477 1.21239 1.17098 1.22070 0.90363 0.92460 0.93556 1.22347 0.95870 0.99358 0.97219 1.22055 0.97902 0.97755 0.97477 1.22020 0.93694 0.99592 0.99516 1.22498 0.98226 0.99422 0.95747 1.21541 0.93748 0.96134 1.02789 1.21907 1.00452 0.96961 0.97176 0.88558 0.93552 0.92837 0.90633 0.91842 0.91145 0.90098 0.93802 0.88012 0.92008 0.92829 0.92001 0.94944 0.90731 0.91445 0.91067 0.90227 0.93150 0.91606 0.89585 0.90847 0.90776 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.82 113.37 1.23 1.78 16 2 O -0.41 -13.94 10.35 -148.98 -1.54 -15.48 16 3 C 0.10 3.40 2.61 30.59 0.08 3.48 16 4 C -0.13 -4.87 5.28 30.59 0.16 -4.71 16 5 C -0.09 -3.53 5.12 30.59 0.16 -3.37 16 6 C -0.10 -4.56 2.12 -11.54 -0.02 -4.59 16 7 C 0.51 25.99 5.19 87.66 0.45 26.44 16 8 O -0.64 -35.40 12.88 -3.08 -0.04 -35.44 16 9 N -0.45 -22.25 2.45 -606.32 -1.49 -23.74 16 10 C -0.34 -15.97 5.04 84.04 0.42 -15.55 16 11 H 0.08 3.74 6.99 -2.91 -0.02 3.72 16 12 C 0.03 1.42 3.13 84.93 0.27 1.69 16 13 N -0.88 -44.77 11.62 21.66 0.25 -44.51 16 14 Si 0.94 36.56 28.46 68.60 1.95 38.51 16 15 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.29 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.25 -8.87 7.10 99.48 0.71 -8.17 16 18 C 0.12 5.42 3.28 46.31 0.15 5.57 16 19 C -0.11 -4.57 6.36 31.69 0.20 -4.37 16 20 C -0.11 -3.57 6.80 31.32 0.21 -3.36 16 21 C -0.11 -3.26 6.80 31.32 0.21 -3.05 16 22 C -0.12 -4.52 6.39 31.67 0.20 -4.32 16 23 C -0.10 -4.00 4.92 30.59 0.15 -3.85 16 24 C -0.13 -4.65 5.32 30.59 0.16 -4.49 16 25 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 0.99 7.87 -2.39 -0.02 0.97 16 27 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.08 2.17 7.79 -2.38 -0.02 2.15 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 3.35 5.33 -2.38 -0.01 3.34 16 31 H 0.08 2.64 8.14 -2.38 -0.02 2.63 16 32 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.10 4.86 4.80 -2.39 -0.01 4.85 16 34 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 35 H 0.05 2.67 7.01 -2.39 -0.02 2.65 16 36 H 0.06 2.83 7.10 -2.39 -0.02 2.82 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.54 6.74 -2.39 -0.02 2.52 16 44 H 0.09 3.52 4.48 -2.38 -0.01 3.51 16 45 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.07 2.33 7.87 -2.39 -0.02 2.31 16 47 H 0.03 1.53 7.22 -2.38 -0.02 1.51 16 Total: -1.00 -60.12 345.40 4.11 -56.01 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.94 Total: 37.35 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.04 Total: -12.69 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.24 Total: -68.25 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -1.58 Total: -50.92 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 1.95 Total: 38.51 kcal Total: -60.12 4.11 -56.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614838518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.917 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds