Wall clock time and date at job start Tue Mar 31 2020 08:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99994 * 2 1 4 4 C 1.52998 * 109.47197 * 150.00594 * 3 2 1 5 5 C 1.52997 * 109.47563 * 59.99239 * 4 3 2 6 6 C 1.53004 * 109.46770 * 60.00682 * 5 4 3 7 7 C 1.50704 * 109.47141 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99916 * 95.56022 * 7 6 5 9 9 N 1.34773 * 119.99524 * 275.55287 * 7 6 5 10 10 C 1.46926 * 120.63362 * 4.92965 * 9 7 6 11 11 C 1.52760 * 109.00479 * 233.58341 * 10 9 7 12 12 C 1.53038 * 109.38601 * 305.58496 * 11 10 9 13 13 C 1.50699 * 109.45319 * 181.25990 * 12 11 10 14 14 H 1.07998 * 119.99692 * 239.94117 * 13 12 11 15 15 C 1.37873 * 120.00105 * 59.93345 * 13 12 11 16 16 N 1.31513 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46967 * 60.00578 * 17 15 13 19 19 H 1.48507 * 109.47103 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47138 * 300.00220 * 17 15 13 21 21 C 1.53034 * 109.53915 * 61.24045 * 12 11 10 22 22 C 1.46929 * 120.62694 * 185.20717 * 9 7 6 23 23 C 1.53005 * 109.46756 * 299.99772 * 6 5 4 24 24 C 1.52994 * 109.47358 * 60.00180 * 23 6 5 25 25 H 1.08994 * 109.47378 * 60.00079 * 1 2 3 26 26 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47080 * 299.99814 * 1 2 3 28 28 H 1.08990 * 109.47010 * 29.99937 * 3 2 1 29 29 H 1.08993 * 109.47308 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46965 * 299.99623 * 4 3 2 31 31 H 1.09002 * 109.47480 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.47469 * 300.00711 * 5 4 3 33 33 H 1.09000 * 109.47745 * 59.99655 * 6 5 4 34 34 H 1.08998 * 109.58537 * 353.41097 * 10 9 7 35 35 H 1.08991 * 109.58757 * 113.83971 * 10 9 7 36 36 H 1.09007 * 109.56122 * 185.54885 * 11 10 9 37 37 H 1.08995 * 109.38988 * 65.51769 * 11 10 9 38 38 H 1.09007 * 109.45628 * 301.22532 * 12 11 10 39 39 H 0.97004 * 120.00011 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.50347 * 178.68450 * 21 12 11 41 41 H 1.09002 * 109.51909 * 58.60452 * 21 12 11 42 42 H 1.09000 * 109.58446 * 246.15762 * 22 9 7 43 43 H 1.08998 * 109.58889 * 6.44104 * 22 9 7 44 44 H 1.09003 * 109.47192 * 299.99969 * 23 6 5 45 45 H 1.09004 * 109.47200 * 180.02562 * 23 6 5 46 46 H 1.09001 * 109.47733 * 179.97438 * 24 23 6 47 47 H 1.09003 * 109.47141 * 59.99757 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7211 5 6 4.2927 0.2892 -0.0001 6 6 4.5001 0.7551 -1.4426 7 6 5.4194 -0.2047 -2.1532 8 8 4.9570 -1.1018 -2.8256 9 7 6.7553 -0.0658 -2.0415 10 6 7.3304 0.9474 -1.1464 11 6 8.3066 1.8149 -1.9390 12 6 9.3421 0.9193 -2.6228 13 6 10.3243 1.7755 -3.3800 14 1 10.4342 1.6556 -4.4476 15 6 11.0824 2.7119 -2.7097 16 7 10.9489 2.8576 -1.4095 17 14 12.2994 3.7738 -3.6484 18 1 11.5759 4.5662 -4.6750 19 1 12.9847 4.6933 -2.7049 20 1 13.3053 2.9056 -4.3114 21 6 8.6366 -0.0287 -3.5951 22 6 7.6641 -0.9209 -2.8172 23 6 3.1514 0.7973 -2.1638 24 6 2.2176 1.7713 -1.4426 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3450 1.9993 0.5138 29 1 3.8020 2.2590 0.7215 30 1 3.2112 0.9313 1.7488 31 1 5.2537 0.2595 0.5134 32 1 3.8493 -0.7065 -0.0001 33 1 4.9435 1.7509 -1.4427 34 1 6.5340 1.5721 -0.7421 35 1 7.8615 0.4558 -0.3314 36 1 8.8120 2.5056 -1.2639 37 1 7.7587 2.3792 -2.6935 38 1 9.8731 0.3374 -1.8693 39 1 11.4820 3.5168 -0.9380 40 1 9.3768 -0.6502 -4.0990 41 1 8.0853 0.5521 -4.3346 42 1 8.2230 -1.5680 -2.1412 43 1 7.0876 -1.5303 -3.5131 44 1 2.7080 -0.1985 -2.1638 45 1 3.2992 1.1288 -3.1916 46 1 1.2569 1.8017 -1.9566 47 1 2.6610 2.7671 -1.4426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614863507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:59 Heat of formation + Delta-G solvation = -124.072184 kcal Electronic energy + Delta-G solvation = -25221.302077 eV Core-core repulsion = 21788.142986 eV Total energy + Delta-G solvation = -3433.159091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56116 -39.87850 -38.42429 -36.73181 -35.31483 -33.18356 -31.92952 -31.74819 -30.99726 -28.05923 -27.31494 -25.30938 -24.14963 -23.66877 -23.41201 -21.48850 -20.52647 -19.71028 -18.60806 -17.91463 -17.27352 -16.97416 -16.70775 -16.46960 -16.23826 -15.89495 -15.13567 -14.94000 -14.72006 -14.66939 -14.41681 -14.31607 -13.92847 -13.58920 -13.48406 -13.27199 -13.13822 -13.04950 -12.98296 -12.78468 -12.48296 -12.32839 -12.13690 -12.06671 -11.92919 -11.64526 -11.50126 -11.36157 -11.24393 -11.01482 -10.88411 -10.51374 -10.36762 -10.30354 -9.53054 -8.06833 -6.19964 1.43465 1.44090 1.51371 1.64917 2.11515 2.44933 2.98208 3.19529 3.51772 3.73061 3.80870 4.00472 4.14747 4.21272 4.24651 4.28485 4.37024 4.42323 4.45323 4.50587 4.56411 4.59420 4.61164 4.63544 4.74563 4.80099 4.85418 4.87290 4.93177 4.98610 5.05491 5.10598 5.18615 5.21330 5.27640 5.28143 5.35535 5.43249 5.49111 5.58203 5.66785 5.99431 6.14668 6.40153 6.41888 6.54728 6.88732 7.21383 7.47491 8.96439 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.027176 B = 0.003502 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.070680 B = 7992.403057 C = 8453.720351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.084 3.916 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.100 4.100 7 C 0.512 3.488 8 O -0.592 6.592 9 N -0.604 5.604 10 C 0.114 3.886 11 C -0.115 4.115 12 C 0.046 3.954 13 C -0.537 4.537 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.276 1.276 21 C -0.112 4.112 22 C 0.116 3.884 23 C -0.090 4.090 24 C -0.135 4.135 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.003 0.997 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 -0.013 6.421 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.027 3.973 4 C -0.148 4.148 5 C -0.136 4.136 6 C -0.121 4.121 7 C 0.302 3.698 8 O -0.473 6.473 9 N -0.335 5.335 10 C -0.008 4.008 11 C -0.154 4.154 12 C 0.028 3.972 13 C -0.575 4.575 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.549 5.549 17 Si 0.774 3.226 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.202 1.202 21 C -0.150 4.150 22 C -0.007 4.007 23 C -0.128 4.128 24 C -0.173 4.173 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.597 -0.543 6.229 19.620 hybrid contribution 0.972 0.555 -0.819 1.387 sum -17.625 0.012 5.410 18.436 Atomic orbital electron populations 1.22902 0.80393 1.03171 1.00634 1.87952 1.20614 1.28748 1.95103 1.22269 0.95212 0.84607 0.95208 1.21672 0.93321 1.00556 0.99220 1.21342 1.00386 0.99979 0.91935 1.21390 0.95160 0.98607 0.96897 1.21295 0.82556 0.85349 0.80600 1.90598 1.76349 1.36331 1.44043 1.48325 1.05392 1.36345 1.43484 1.21886 0.97404 0.89730 0.91793 1.21722 0.95648 0.98785 0.99247 1.18592 0.92539 0.92758 0.93328 1.21502 1.21815 1.19928 0.94226 0.93612 1.25606 0.98440 0.98193 0.95712 1.69931 1.41343 1.35625 1.08034 0.85778 0.79417 0.78813 0.78600 1.20019 1.20714 1.20166 1.21846 0.97150 0.97817 0.98236 1.21556 0.91372 0.92768 0.95004 1.21171 0.93238 1.00518 0.97867 1.22037 0.99761 0.99276 0.96188 0.93660 0.89632 0.92754 0.89792 0.88431 0.90070 0.91089 0.92701 0.87670 0.87927 0.91655 0.89957 0.95253 0.97929 0.92854 0.91947 0.94013 0.91506 0.90607 0.92639 0.93140 0.90858 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 113.37 1.23 1.59 16 2 O -0.40 -8.50 9.00 -148.98 -1.34 -9.84 16 3 C 0.08 1.42 2.92 30.60 0.09 1.50 16 4 C -0.11 -1.86 5.66 30.59 0.17 -1.68 16 5 C -0.10 -2.29 4.85 30.59 0.15 -2.14 16 6 C -0.10 -2.66 1.66 -11.54 -0.02 -2.68 16 7 C 0.51 18.17 6.81 87.66 0.60 18.77 16 8 O -0.59 -24.98 15.52 -3.02 -0.05 -25.02 16 9 N -0.60 -21.79 2.98 -819.75 -2.44 -24.23 16 10 C 0.11 3.91 5.78 86.22 0.50 4.40 16 11 C -0.12 -5.02 5.14 30.53 0.16 -4.86 16 12 C 0.05 2.23 2.07 -11.52 -0.02 2.21 16 13 C -0.54 -28.90 8.56 25.60 0.22 -28.68 16 14 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.02 1.05 5.30 84.65 0.45 1.50 16 16 N -0.91 -49.61 11.31 21.45 0.24 -49.37 16 17 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 22 C 0.12 4.36 6.42 86.36 0.55 4.92 16 23 C -0.09 -2.31 4.58 30.59 0.14 -2.17 16 24 C -0.14 -2.41 5.63 30.59 0.17 -2.24 16 25 H 0.04 0.58 7.87 -2.39 -0.02 0.56 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 0.59 8.09 -2.38 -0.02 0.57 16 28 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.07 1.60 7.29 -2.39 -0.02 1.58 16 32 H 0.05 1.52 7.68 -2.39 -0.02 1.50 16 33 H 0.11 2.54 6.52 -2.39 -0.02 2.53 16 34 H 0.10 2.85 5.07 -2.39 -0.01 2.84 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 3.98 6.03 -2.38 -0.01 3.97 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.89 7.04 -2.39 -0.02 2.87 16 44 H 0.05 1.70 7.41 -2.39 -0.02 1.68 16 45 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.07 1.18 7.87 -2.39 -0.02 1.17 16 47 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.34 355.42 3.91 -60.43 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.93 Total: 17.60 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.54 Total: -14.12 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.20 Total: -73.59 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.39 Total: -34.86 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -64.34 3.91 -60.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614863507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.640 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds