Wall clock time and date at job start Tue Mar 31 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20763 * 120.00162 * 2 1 4 4 C 1.50709 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47102 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47219 * 59.99651 * 5 4 2 7 7 C 1.53003 * 109.47033 * 299.99677 * 5 4 2 8 8 C 1.52998 * 109.46654 * 180.02562 * 5 4 2 9 9 C 1.50697 * 109.46984 * 179.97438 * 8 5 4 10 10 O 1.21288 * 119.99933 * 359.97438 * 9 8 5 11 11 N 1.34780 * 120.00489 * 179.97438 * 9 8 5 12 12 C 1.46957 * 120.64915 * 359.81927 * 11 9 8 13 13 C 1.53197 * 108.89063 * 233.53185 * 12 11 9 14 14 C 1.53040 * 109.31110 * 305.44560 * 13 12 11 15 15 C 1.53044 * 109.53662 * 61.36306 * 14 13 12 16 16 H 1.08997 * 109.49691 * 58.58900 * 15 14 13 17 17 C 1.50702 * 109.52456 * 178.66800 * 15 14 13 18 18 H 1.08000 * 120.00459 * 119.85028 * 17 15 14 19 19 C 1.37880 * 119.99754 * 299.85489 * 17 15 14 20 20 N 1.31509 * 120.00040 * 179.97438 * 19 17 15 21 21 Si 1.86802 * 120.00039 * 0.02562 * 19 17 15 22 22 H 1.48497 * 109.47322 * 89.99915 * 21 19 17 23 23 H 1.48502 * 109.46910 * 210.00238 * 21 19 17 24 24 H 1.48503 * 109.47071 * 329.99527 * 21 19 17 25 25 C 1.46926 * 120.63278 * 180.02562 * 11 9 8 26 26 H 1.08997 * 109.46647 * 269.99696 * 1 2 3 27 27 H 1.08992 * 109.47113 * 29.99994 * 1 2 3 28 28 H 1.08997 * 109.46962 * 149.99897 * 1 2 3 29 29 H 1.09004 * 109.47220 * 59.99771 * 4 2 1 30 30 H 1.08994 * 109.46819 * 299.99974 * 4 2 1 31 31 H 1.09007 * 109.47145 * 179.97438 * 6 5 4 32 32 H 1.08997 * 109.47771 * 300.00132 * 6 5 4 33 33 H 1.09002 * 109.46743 * 60.00505 * 6 5 4 34 34 H 1.09004 * 109.47185 * 300.00177 * 7 5 4 35 35 H 1.09003 * 109.46793 * 60.00160 * 7 5 4 36 36 H 1.08999 * 109.47122 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.47475 * 59.99878 * 8 5 4 38 38 H 1.08997 * 109.47297 * 299.99363 * 8 5 4 39 39 H 1.09001 * 109.46843 * 113.75181 * 12 11 9 40 40 H 1.08998 * 109.59977 * 353.39397 * 12 11 9 41 41 H 1.08995 * 109.50005 * 185.49506 * 13 12 11 42 42 H 1.08996 * 109.49270 * 65.39471 * 13 12 11 43 43 H 1.08994 * 109.45892 * 301.34445 * 14 13 12 44 44 H 1.09001 * 109.45142 * 181.37673 * 14 13 12 45 45 H 0.97002 * 120.00386 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58861 * 6.60537 * 25 11 9 47 47 H 1.08996 * 109.58519 * 246.32428 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.1339 -0.2240 1.2500 7 6 4.1349 -0.2224 -1.2484 8 6 4.5297 -2.3506 -0.0011 9 6 6.0113 -2.0752 -0.0009 10 8 6.4156 -0.9317 -0.0004 11 7 6.8872 -3.0996 -0.0014 12 6 6.4132 -4.4906 0.0020 13 6 7.0714 -5.2362 1.1672 14 6 8.5916 -5.0903 1.0672 15 6 8.9713 -3.6109 1.1640 16 1 8.6087 -3.2033 2.1077 17 6 10.4703 -3.4703 1.0983 18 1 10.9245 -2.8944 0.3056 19 6 11.2620 -4.0771 2.0502 20 7 12.5701 -3.9548 1.9926 21 14 10.4765 -5.0740 3.4209 22 1 10.3420 -6.4885 2.9896 23 1 11.3299 -5.0054 4.6343 24 1 9.1334 -4.5203 3.7285 25 6 8.3346 -2.8470 -0.0007 26 1 -0.3632 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9972 -1.8764 -0.8908 30 1 1.9972 -1.8771 0.8891 31 1 5.2057 -0.0252 1.2508 32 1 3.5889 0.7199 1.2505 33 1 3.8703 -0.7962 2.1395 34 1 3.8719 -0.7935 -2.1389 35 1 3.5898 0.7215 -1.2480 36 1 5.2066 -0.0236 -1.2481 37 1 4.2666 -2.9212 -0.8917 38 1 4.2662 -2.9231 0.8882 39 1 6.6855 -4.9695 -0.9386 40 1 5.3300 -4.5075 0.1227 41 1 6.8035 -6.2917 1.1216 42 1 6.7267 -4.8132 2.1108 43 1 8.9327 -5.4910 0.1127 44 1 9.0634 -5.6404 1.8814 45 1 13.1272 -4.3820 2.6621 46 1 8.5192 -1.7794 0.1183 47 1 8.7657 -3.1897 -0.9413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617294321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:28 Heat of formation + Delta-G solvation = -101.660200 kcal Electronic energy + Delta-G solvation = -25119.921079 eV Core-core repulsion = 21687.733844 eV Total energy + Delta-G solvation = -3432.187235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61197 -40.57218 -38.77861 -36.66127 -35.35098 -33.54334 -32.27496 -31.76597 -29.56354 -28.11035 -28.00289 -26.88245 -26.06186 -23.18408 -22.15770 -20.97912 -19.90705 -19.41621 -18.80630 -18.08929 -16.96812 -16.82777 -16.42002 -16.30454 -16.22902 -15.73825 -15.38926 -15.11612 -15.03744 -14.86652 -14.39961 -14.18517 -14.12138 -13.88003 -13.58505 -13.21582 -13.01977 -12.88228 -12.87483 -12.76999 -12.44219 -12.22672 -12.11291 -12.08616 -12.00001 -11.88997 -11.82632 -11.50918 -11.48397 -11.21906 -11.01758 -10.69533 -10.46187 -10.02935 -9.43561 -8.33462 -6.38801 1.18011 1.26214 1.34352 1.44726 1.77949 2.16674 2.29745 3.01474 3.26462 3.60526 3.95835 3.97095 4.03281 4.08463 4.10251 4.27931 4.33652 4.39677 4.49328 4.57424 4.62231 4.64402 4.73761 4.76477 4.79363 4.85722 4.85798 4.92016 4.93827 4.99507 5.02948 5.13890 5.15992 5.17560 5.21256 5.24172 5.39552 5.46255 5.50052 5.59361 5.65585 5.68500 5.79617 6.24590 6.65174 6.68244 6.81554 7.26505 7.38877 8.83535 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.003462 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.834673 B = 8086.911287 C = 8289.444905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.346 3.654 3 O -0.496 6.496 4 C -0.159 4.159 5 C -0.034 4.034 6 C -0.160 4.160 7 C -0.159 4.159 8 C -0.122 4.122 9 C 0.499 3.501 10 O -0.579 6.579 11 N -0.614 5.614 12 C 0.107 3.893 13 C -0.133 4.133 14 C -0.123 4.123 15 C 0.010 3.990 16 H 0.011 0.989 17 C -0.524 4.524 18 H 0.029 0.971 19 C 0.011 3.989 20 N -0.950 5.950 21 Si 0.958 3.042 22 H -0.255 1.255 23 H -0.302 1.302 24 H -0.252 1.252 25 C 0.140 3.860 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.267 0.733 46 H 0.049 0.951 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.078 -4.348 -4.103 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.226 3.774 3 O -0.373 6.373 4 C -0.196 4.196 5 C -0.034 4.034 6 C -0.217 4.217 7 C -0.216 4.216 8 C -0.161 4.161 9 C 0.290 3.710 10 O -0.460 6.460 11 N -0.346 5.346 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.160 4.160 15 C -0.010 4.010 16 H 0.029 0.971 17 C -0.563 4.563 18 H 0.048 0.952 19 C -0.186 4.186 20 N -0.590 5.590 21 Si 0.784 3.216 22 H -0.180 1.180 23 H -0.230 1.230 24 H -0.176 1.176 25 C 0.016 3.984 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.408 -3.260 -4.053 29.865 hybrid contribution 1.298 0.159 0.696 1.481 sum -28.110 -3.102 -3.358 28.479 Atomic orbital electron populations 1.22312 0.92030 1.05687 1.05615 1.25215 0.93289 0.90282 0.68628 1.90363 1.72453 1.37174 1.37330 1.22308 0.92459 0.97463 1.07380 1.20067 0.94371 0.93489 0.95523 1.22205 1.02053 1.00693 0.96781 1.22198 1.02136 1.00632 0.96649 1.21888 0.88030 0.99375 1.06835 1.21560 0.90453 0.84029 0.75006 1.90592 1.81043 1.22865 1.51510 1.48458 1.05880 1.07868 1.72411 1.22042 1.00959 0.79325 0.99091 1.21996 0.94064 1.02145 0.98940 1.21864 0.96461 0.96811 1.00884 1.19315 0.93352 0.93867 0.94452 0.97056 1.21265 0.91358 1.31868 1.11784 0.95219 1.25924 0.94994 0.97444 1.00264 1.70057 1.05558 1.46248 1.37149 0.85707 0.78603 0.79746 0.77504 1.18050 1.23003 1.17603 1.21189 0.79631 0.99317 0.98213 0.87542 0.90713 0.86826 0.85074 0.85415 0.93757 0.92423 0.92803 0.92320 0.92525 0.93580 0.85462 0.86101 0.89992 0.85604 0.87733 0.92364 0.91949 0.94608 0.92459 0.93231 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 10.25 71.23 0.73 -0.64 16 2 C 0.35 5.14 6.68 29.10 0.19 5.34 16 3 O -0.50 -12.61 12.10 -1.46 -0.02 -12.62 16 4 C -0.16 -1.67 4.69 29.85 0.14 -1.53 16 5 C -0.03 -0.70 0.51 -52.18 -0.03 -0.73 16 6 C -0.16 -4.43 7.88 71.98 0.57 -3.86 16 7 C -0.16 -4.18 7.88 71.98 0.57 -3.62 16 8 C -0.12 -2.20 3.12 29.85 0.09 -2.10 16 9 C 0.50 15.53 7.11 87.66 0.62 16.16 16 10 O -0.58 -23.79 10.76 -3.05 -0.03 -23.82 16 11 N -0.61 -19.51 2.98 -818.89 -2.44 -21.95 16 12 C 0.11 2.29 6.34 86.36 0.55 2.84 16 13 C -0.13 -3.43 6.08 30.67 0.19 -3.25 16 14 C -0.12 -4.69 4.66 30.62 0.14 -4.55 16 15 C 0.01 0.46 1.84 -11.47 -0.02 0.44 16 16 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 17 C -0.52 -30.72 9.15 25.60 0.23 -30.48 16 18 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 19 C 0.01 0.63 5.45 84.66 0.46 1.10 16 20 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 21 Si 0.96 45.26 24.39 68.60 1.67 46.93 16 22 H -0.26 -11.02 6.86 99.48 0.68 -10.34 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.25 -11.18 6.53 99.48 0.65 -10.54 16 25 C 0.14 5.94 5.65 86.35 0.49 6.43 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.10 8.12 -2.39 -0.02 0.08 16 29 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 1.60 5.51 -2.38 -0.01 1.59 16 32 H 0.06 1.73 5.52 -2.39 -0.01 1.71 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.06 1.64 5.52 -2.39 -0.01 1.63 16 36 H 0.05 1.59 5.51 -2.39 -0.01 1.57 16 37 H 0.13 1.40 7.95 -2.38 -0.02 1.38 16 38 H 0.12 1.51 7.68 -2.39 -0.02 1.49 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.13 1.49 5.94 -2.39 -0.01 1.47 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.04 1.46 3.27 -2.39 -0.01 1.45 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.05 2.42 7.01 -2.39 -0.02 2.40 16 47 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -83.28 347.06 5.27 -78.00 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.87 Total: 12.20 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.93 Total: -18.46 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.14 Total: -82.22 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.05 Total: -36.45 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -83.28 5.27 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.659 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds