Wall clock time and date at job start Tue Mar 31 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47120 * 2 1 4 4 C 1.53013 * 109.46840 * 240.00685 * 2 1 3 5 5 C 1.50696 * 109.47021 * 64.99429 * 4 2 1 6 6 H 1.07997 * 120.00237 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99905 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00088 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47316 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47047 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 299.99827 * 9 7 5 13 13 C 1.52998 * 109.47375 * 120.00653 * 2 1 3 14 14 N 1.46895 * 109.47147 * 296.32337 * 13 2 1 15 15 C 1.47016 * 110.99766 * 317.90637 * 14 13 2 16 16 C 1.53096 * 109.25477 * 182.39291 * 15 14 13 17 17 O 1.43008 * 109.26029 * 303.14764 * 16 15 14 18 18 C 1.43014 * 113.74159 * 58.67083 * 17 16 15 19 19 C 1.47010 * 111.00052 * 81.53984 * 14 13 2 20 20 H 1.09009 * 109.50638 * 297.58316 * 19 14 13 21 21 C 1.52996 * 109.50869 * 57.67001 * 19 14 13 22 22 H 1.08992 * 109.97635 * 300.98576 * 21 19 14 23 23 C 1.54283 * 109.98567 * 179.71507 * 21 19 14 24 24 C 1.54983 * 103.74885 * 217.53328 * 23 21 19 25 25 C 1.54892 * 102.33929 * 37.08323 * 24 23 21 26 26 C 1.51454 * 109.98358 * 62.29988 * 21 19 14 27 27 O 1.20759 * 126.33918 * 298.97653 * 26 21 19 28 28 H 1.08995 * 109.47326 * 76.96981 * 1 2 3 29 29 H 1.09003 * 109.46561 * 196.96824 * 1 2 3 30 30 H 1.08994 * 109.46418 * 316.96650 * 1 2 3 31 31 H 1.08993 * 109.47090 * 184.99859 * 4 2 1 32 32 H 1.08999 * 109.46642 * 304.99692 * 4 2 1 33 33 H 0.96995 * 119.99453 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47101 * 176.31936 * 13 2 1 35 35 H 1.09001 * 109.47204 * 56.32332 * 13 2 1 36 36 H 1.09003 * 109.50429 * 302.32470 * 15 14 13 37 37 H 1.08998 * 109.51003 * 62.45419 * 15 14 13 38 38 H 1.09001 * 109.51273 * 63.08840 * 16 15 14 39 39 H 1.09002 * 109.50859 * 183.16896 * 16 15 14 40 40 H 1.08997 * 109.51328 * 181.39578 * 18 17 16 41 41 H 1.09009 * 109.50199 * 61.26446 * 18 17 16 42 42 H 1.08999 * 110.56874 * 98.96620 * 23 21 19 43 43 H 1.09000 * 110.56965 * 336.09504 * 23 21 19 44 44 H 1.09003 * 110.83761 * 155.29490 * 24 23 21 45 45 H 1.09008 * 110.83311 * 278.87079 * 24 23 21 46 46 H 1.09003 * 110.43911 * 81.11128 * 25 24 23 47 47 H 1.08994 * 110.44320 * 203.63826 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2495 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9930 -0.4014 -3.7284 8 7 2.6763 -1.5185 -3.8514 9 14 1.4993 0.5638 -5.2496 10 1 2.0914 1.9242 -5.1865 11 1 1.9941 -0.1362 -6.4622 12 1 0.0193 0.6703 -5.3095 13 6 2.0401 -0.7214 1.2491 14 7 1.6243 0.0203 2.4470 15 6 1.7907 1.4683 2.2542 16 6 1.4035 2.1970 3.5437 17 8 0.0625 1.8486 3.8980 18 6 -0.1352 0.4458 4.0940 19 6 0.2365 -0.3008 2.8102 20 1 -0.4308 0.0053 2.0043 21 6 0.1038 -1.8077 3.0388 22 1 0.3871 -2.3478 2.1354 23 6 -1.3480 -2.1562 3.4278 24 6 -1.1868 -3.2767 4.4864 25 6 0.0740 -2.8205 5.2619 26 6 0.9829 -2.2352 4.1956 27 8 2.1843 -2.1301 4.2583 28 1 -0.3634 0.2317 -1.0011 29 1 -0.3632 -0.9830 0.2999 30 1 -0.3632 0.7512 0.7013 31 1 3.1263 -0.7994 -1.2059 32 1 1.6054 -1.7197 -1.2954 33 1 2.9241 -1.8409 -4.7320 34 1 3.1281 -0.7788 1.2167 35 1 1.6240 -1.7283 1.2826 36 1 2.8308 1.6860 2.0113 37 1 1.1483 1.8032 1.4398 38 1 2.0802 1.9023 4.3457 39 1 1.4713 3.2737 3.3877 40 1 -1.1809 0.2559 4.3358 41 1 0.4968 0.1000 4.9121 42 1 -1.8988 -2.5237 2.5620 43 1 -1.8470 -1.2893 3.8608 44 1 -2.0543 -3.3153 5.1453 45 1 -1.0193 -4.2415 4.0073 46 1 -0.1865 -2.0609 5.9989 47 1 0.5530 -3.6723 5.7446 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639087924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:31 Heat of formation + Delta-G solvation = -77.752773 kcal Electronic energy + Delta-G solvation = -25964.901205 eV Core-core repulsion = 22533.750674 eV Total energy + Delta-G solvation = -3431.150531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86455 -38.89836 -36.86635 -36.25337 -33.76245 -32.02446 -31.64991 -28.65439 -27.72008 -27.00455 -26.76321 -24.86396 -23.38071 -22.42911 -21.06369 -20.56859 -19.22007 -18.28553 -16.97755 -16.46979 -16.08737 -15.87216 -15.60642 -15.17371 -14.92719 -14.76214 -14.33064 -14.15273 -13.86158 -13.59875 -13.31015 -12.86771 -12.81623 -12.40522 -12.18283 -12.10657 -11.76186 -11.63409 -11.44700 -11.33013 -11.18554 -10.96005 -10.89624 -10.80179 -10.72618 -10.52725 -10.33591 -10.23875 -9.69674 -9.50046 -9.36929 -9.26179 -9.04855 -8.35449 -7.71166 -5.99906 -4.01899 2.07560 3.31663 3.36620 3.38658 3.81173 3.91894 4.20749 4.34820 4.44992 4.61371 4.74198 4.87280 4.95371 5.07514 5.17297 5.23983 5.29858 5.32886 5.35646 5.40679 5.46387 5.57004 5.62942 5.63566 5.71160 5.79267 5.80877 5.86537 5.91823 5.94401 6.01153 6.07293 6.18638 6.23243 6.37281 6.56909 6.85626 6.97626 7.07878 7.11625 7.33863 7.40244 7.65939 7.66155 7.80562 7.99041 8.42551 9.04042 9.61651 11.11111 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.004347 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.386138 B = 6438.937700 C = 7040.332081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.522 5.522 15 C 0.013 3.987 16 C 0.063 3.937 17 O -0.385 6.385 18 C 0.066 3.934 19 C 0.038 3.962 20 H 0.089 0.911 21 C -0.149 4.149 22 H 0.111 0.889 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.187 4.187 26 C 0.373 3.627 27 O -0.417 6.417 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -0.057 18.742 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.246 5.246 15 C -0.115 4.115 16 C -0.014 4.014 17 O -0.303 6.303 18 C -0.011 4.011 19 C -0.071 4.071 20 H 0.106 0.894 21 C -0.168 4.168 22 H 0.129 0.871 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.225 4.225 26 C 0.245 3.755 27 O -0.286 6.286 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.117 0.883 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.387 -0.122 19.066 20.448 hybrid contribution -0.515 0.434 -1.764 1.889 sum -7.903 0.311 17.302 19.024 Atomic orbital electron populations 1.22096 0.96764 0.99235 1.01836 1.21863 0.95109 1.00321 0.96745 0.91940 1.19048 0.96092 0.95297 0.90145 1.21180 1.34880 1.08265 0.91080 0.92804 1.25011 0.95271 0.95053 0.99043 1.69956 1.38823 1.21162 1.23518 0.86710 0.78846 0.80166 0.82581 1.20304 1.21316 1.20328 1.22444 1.00743 0.96991 0.86793 1.62546 1.19566 1.05998 1.36444 1.22845 1.02596 0.88629 0.97422 1.22716 0.83395 0.99322 0.96001 1.87950 1.29257 1.23106 1.89999 1.22821 1.01090 0.81330 0.95850 1.22647 0.92577 0.92771 0.99057 0.89356 1.22501 0.96363 0.97167 1.00773 0.87120 1.22457 0.94898 0.98974 0.99542 1.22407 0.96952 0.98771 0.97491 1.22968 0.97745 1.02530 0.99220 1.24674 0.88901 0.73638 0.88325 1.90432 1.15418 1.43533 1.79241 0.91265 0.93937 0.94293 0.96668 0.96749 0.92999 0.90860 0.91248 0.89645 0.92427 0.92742 0.88720 0.88542 0.93262 0.90255 0.90444 0.90433 0.90740 0.88301 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.37 37.16 0.27 -2.32 16 2 C -0.12 -2.40 1.81 -90.61 -0.16 -2.56 16 3 H 0.06 1.28 6.17 -51.93 -0.32 0.96 16 4 C 0.03 0.80 4.45 -27.88 -0.12 0.68 16 5 C -0.52 -14.28 8.16 -34.44 -0.28 -14.56 16 6 H 0.05 1.45 7.21 -52.49 -0.38 1.08 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.02 5.05 -3.83 -0.02 1.00 16 14 N -0.52 -8.04 3.94 -226.34 -0.89 -8.93 16 15 C 0.01 0.19 4.50 -3.71 -0.02 0.18 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.38 -5.28 10.83 -35.23 -0.38 -5.66 16 18 C 0.07 0.79 5.76 37.21 0.21 1.01 16 19 C 0.04 0.50 1.23 -67.60 -0.08 0.42 16 20 H 0.09 1.25 3.88 -51.92 -0.20 1.05 16 21 C -0.15 -1.75 2.39 -90.73 -0.22 -1.97 16 22 H 0.11 1.48 5.95 -51.93 -0.31 1.17 16 23 C -0.12 -1.02 6.22 -25.01 -0.16 -1.17 16 24 C -0.12 -0.84 6.95 -24.69 -0.17 -1.01 16 25 C -0.19 -1.59 6.72 -26.32 -0.18 -1.77 16 26 C 0.37 4.66 5.67 -28.10 -0.16 4.50 16 27 O -0.42 -6.86 17.36 6.00 0.10 -6.76 16 28 H 0.07 1.42 6.65 -51.93 -0.35 1.07 16 29 H 0.04 0.72 7.51 -51.93 -0.39 0.33 16 30 H 0.04 0.64 4.95 -51.93 -0.26 0.38 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.23 5.32 -51.93 -0.28 0.95 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.91 5.12 -51.93 -0.27 0.65 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 0.93 6.21 -51.93 -0.32 0.61 16 41 H 0.05 0.61 7.06 -51.92 -0.37 0.24 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.58 5.79 -51.93 -0.30 0.27 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -31.63 344.71 -8.69 -40.32 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.52 Total: 0.31 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.92 Total: -14.98 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.15 Total: -35.02 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.28 Total: -12.41 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.63 -8.69 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.434 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds