Wall clock time and date at job start Tue Mar 31 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47120 * 2 1 4 4 C 1.53013 * 109.46840 * 240.00685 * 2 1 3 5 5 C 1.50696 * 109.47021 * 64.99429 * 4 2 1 6 6 H 1.07997 * 120.00237 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99905 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00088 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47316 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47047 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 299.99827 * 9 7 5 13 13 C 1.52998 * 109.47375 * 120.00653 * 2 1 3 14 14 N 1.46895 * 109.47147 * 296.32337 * 13 2 1 15 15 C 1.47016 * 110.99766 * 317.90637 * 14 13 2 16 16 C 1.53096 * 109.25477 * 182.39291 * 15 14 13 17 17 O 1.43008 * 109.26029 * 303.14764 * 16 15 14 18 18 C 1.43014 * 113.74159 * 58.67083 * 17 16 15 19 19 C 1.47010 * 111.00052 * 81.53984 * 14 13 2 20 20 H 1.09009 * 109.50638 * 297.58316 * 19 14 13 21 21 C 1.52996 * 109.50869 * 57.67001 * 19 14 13 22 22 H 1.08992 * 109.97635 * 300.98576 * 21 19 14 23 23 C 1.54283 * 109.98567 * 179.71507 * 21 19 14 24 24 C 1.54983 * 103.74885 * 217.53328 * 23 21 19 25 25 C 1.54892 * 102.33929 * 37.08323 * 24 23 21 26 26 C 1.51454 * 109.98358 * 62.29988 * 21 19 14 27 27 O 1.20759 * 126.33918 * 298.97653 * 26 21 19 28 28 H 1.08995 * 109.47326 * 76.96981 * 1 2 3 29 29 H 1.09003 * 109.46561 * 196.96824 * 1 2 3 30 30 H 1.08994 * 109.46418 * 316.96650 * 1 2 3 31 31 H 1.08993 * 109.47090 * 184.99859 * 4 2 1 32 32 H 1.08999 * 109.46642 * 304.99692 * 4 2 1 33 33 H 0.96995 * 119.99453 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47101 * 176.31936 * 13 2 1 35 35 H 1.09001 * 109.47204 * 56.32332 * 13 2 1 36 36 H 1.09003 * 109.50429 * 302.32470 * 15 14 13 37 37 H 1.08998 * 109.51003 * 62.45419 * 15 14 13 38 38 H 1.09001 * 109.51273 * 63.08840 * 16 15 14 39 39 H 1.09002 * 109.50859 * 183.16896 * 16 15 14 40 40 H 1.08997 * 109.51328 * 181.39578 * 18 17 16 41 41 H 1.09009 * 109.50199 * 61.26446 * 18 17 16 42 42 H 1.08999 * 110.56874 * 98.96620 * 23 21 19 43 43 H 1.09000 * 110.56965 * 336.09504 * 23 21 19 44 44 H 1.09003 * 110.83761 * 155.29490 * 24 23 21 45 45 H 1.09008 * 110.83311 * 278.87079 * 24 23 21 46 46 H 1.09003 * 110.43911 * 81.11128 * 25 24 23 47 47 H 1.08994 * 110.44320 * 203.63826 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2495 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9930 -0.4014 -3.7284 8 7 2.6763 -1.5185 -3.8514 9 14 1.4993 0.5638 -5.2496 10 1 2.0914 1.9242 -5.1865 11 1 1.9941 -0.1362 -6.4622 12 1 0.0193 0.6703 -5.3095 13 6 2.0401 -0.7214 1.2491 14 7 1.6243 0.0203 2.4470 15 6 1.7907 1.4683 2.2542 16 6 1.4035 2.1970 3.5437 17 8 0.0625 1.8486 3.8980 18 6 -0.1352 0.4458 4.0940 19 6 0.2365 -0.3008 2.8102 20 1 -0.4308 0.0053 2.0043 21 6 0.1038 -1.8077 3.0388 22 1 0.3871 -2.3478 2.1354 23 6 -1.3480 -2.1562 3.4278 24 6 -1.1868 -3.2767 4.4864 25 6 0.0740 -2.8205 5.2619 26 6 0.9829 -2.2352 4.1956 27 8 2.1843 -2.1301 4.2583 28 1 -0.3634 0.2317 -1.0011 29 1 -0.3632 -0.9830 0.2999 30 1 -0.3632 0.7512 0.7013 31 1 3.1263 -0.7994 -1.2059 32 1 1.6054 -1.7197 -1.2954 33 1 2.9241 -1.8409 -4.7320 34 1 3.1281 -0.7788 1.2167 35 1 1.6240 -1.7283 1.2826 36 1 2.8308 1.6860 2.0113 37 1 1.1483 1.8032 1.4398 38 1 2.0802 1.9023 4.3457 39 1 1.4713 3.2737 3.3877 40 1 -1.1809 0.2559 4.3358 41 1 0.4968 0.1000 4.9121 42 1 -1.8988 -2.5237 2.5620 43 1 -1.8470 -1.2893 3.8608 44 1 -2.0543 -3.3153 5.1453 45 1 -1.0193 -4.2415 4.0073 46 1 -0.1865 -2.0609 5.9989 47 1 0.5530 -3.6723 5.7446 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639087924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:31 Heat of formation + Delta-G solvation = -98.178156 kcal Electronic energy + Delta-G solvation = -25965.786916 eV Core-core repulsion = 22533.750674 eV Total energy + Delta-G solvation = -3432.036242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93528 -39.97235 -38.18944 -37.18916 -35.52775 -33.68953 -32.81877 -29.82309 -28.96771 -28.67790 -27.60185 -26.37857 -24.51326 -24.14869 -21.81114 -21.69188 -20.72723 -19.41124 -18.55288 -17.85751 -17.31088 -16.95212 -16.57886 -16.54822 -16.27124 -15.90036 -15.75893 -15.61295 -14.90180 -14.74415 -14.48007 -14.19213 -13.93728 -13.71085 -13.58648 -13.47910 -13.33279 -12.87120 -12.74676 -12.65113 -12.47000 -12.36202 -12.20853 -12.04979 -11.94420 -11.82557 -11.65860 -11.50082 -11.29604 -11.17819 -11.06458 -10.59844 -10.55397 -10.20622 -9.04290 -8.19387 -6.30038 1.10560 1.37648 1.40083 1.47969 2.39232 2.76427 2.89553 3.13070 3.29472 3.54247 3.72936 3.85861 3.94478 4.06255 4.09403 4.16167 4.19175 4.22431 4.32643 4.38425 4.42305 4.47511 4.54268 4.65767 4.70656 4.74238 4.78729 4.81091 4.87041 4.88404 4.98125 5.05095 5.09374 5.18366 5.23686 5.24300 5.29786 5.42339 5.43325 5.49622 5.71077 5.82985 6.01854 6.06467 6.17135 6.25389 6.71609 6.85139 7.38441 8.91648 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.004347 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.386138 B = 6438.937700 C = 7040.332081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 H 0.057 0.943 4 C 0.038 3.962 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.071 3.929 14 N -0.525 5.525 15 C 0.010 3.990 16 C 0.068 3.932 17 O -0.393 6.393 18 C 0.068 3.932 19 C 0.036 3.964 20 H 0.082 0.918 21 C -0.153 4.153 22 H 0.088 0.912 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.179 4.179 26 C 0.367 3.633 27 O -0.467 6.467 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.062 0.938 31 H -0.018 1.018 32 H -0.011 1.011 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.120 0.880 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 0.859 20.209 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 H 0.076 0.924 4 C 0.001 3.999 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.057 4.057 14 N -0.248 5.248 15 C -0.118 4.118 16 C -0.009 4.009 17 O -0.312 6.312 18 C -0.009 4.009 19 C -0.072 4.072 20 H 0.099 0.901 21 C -0.172 4.172 22 H 0.106 0.894 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.216 4.216 26 C 0.243 3.757 27 O -0.340 6.340 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.000 1.000 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.138 0.862 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.049 0.801 20.552 22.891 hybrid contribution 0.337 0.117 -2.197 2.226 sum -9.711 0.918 18.355 20.786 Atomic orbital electron populations 1.21961 0.94895 1.00635 1.01105 1.21674 0.96517 0.99357 0.95159 0.92437 1.18921 0.93897 0.94558 0.92564 1.21559 1.34662 1.08518 0.92041 0.92252 1.25940 0.95159 0.96034 1.02606 1.70102 1.40090 1.22942 1.24364 0.85576 0.78993 0.78729 0.78217 1.19394 1.20986 1.19078 1.22143 0.99321 0.97141 0.87049 1.62544 1.21590 1.06288 1.34407 1.22900 1.02140 0.88271 0.98458 1.22737 0.83236 1.00267 0.94616 1.87942 1.29409 1.23971 1.89866 1.22969 1.02925 0.80337 0.94635 1.22744 0.90659 0.94115 0.99667 0.90058 1.22572 0.98916 0.95863 0.99892 0.89446 1.22486 0.92205 1.00224 1.00319 1.22434 0.97132 0.98013 0.97172 1.22982 0.97245 1.03032 0.98370 1.25318 0.88508 0.72400 0.89521 1.90413 1.17591 1.45680 1.80359 0.93531 0.92886 0.91916 0.99971 0.99240 0.92913 0.93097 0.91443 0.90267 0.93537 0.92644 0.86550 0.85362 0.93407 0.89838 0.88658 0.87488 0.90878 0.86175 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.37 71.98 0.53 -4.16 16 2 C -0.11 -4.42 1.81 -10.79 -0.02 -4.44 16 3 H 0.06 2.42 6.17 -2.39 -0.01 2.41 16 4 C 0.04 2.04 4.45 29.85 0.13 2.18 16 5 C -0.53 -30.06 8.16 25.60 0.21 -29.85 16 6 H 0.06 3.23 7.21 -2.91 -0.02 3.21 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 C 0.07 2.66 5.05 86.30 0.44 3.09 16 14 N -0.52 -16.31 3.94 -870.02 -3.42 -19.73 16 15 C 0.01 0.30 4.50 86.31 0.39 0.69 16 16 C 0.07 1.63 7.01 72.01 0.50 2.13 16 17 O -0.39 -9.75 10.83 -148.98 -1.61 -11.37 16 18 C 0.07 1.44 5.76 72.02 0.42 1.86 16 19 C 0.04 0.92 1.23 44.93 0.06 0.97 16 20 H 0.08 2.17 3.88 -2.38 -0.01 2.16 16 21 C -0.15 -3.44 2.39 -10.87 -0.03 -3.47 16 22 H 0.09 2.38 5.95 -2.39 -0.01 2.37 16 23 C -0.11 -1.57 6.22 31.71 0.20 -1.37 16 24 C -0.11 -1.16 6.95 31.92 0.22 -0.93 16 25 C -0.18 -2.54 6.72 30.86 0.21 -2.33 16 26 C 0.37 8.89 5.67 29.71 0.17 9.06 16 27 O -0.47 -15.70 17.36 -1.45 -0.03 -15.73 16 28 H 0.05 1.90 6.65 -2.39 -0.02 1.88 16 29 H 0.05 1.78 7.51 -2.39 -0.02 1.76 16 30 H 0.06 1.99 4.95 -2.39 -0.01 1.97 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.53 5.32 -2.39 -0.01 2.51 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.45 5.12 -2.39 -0.01 1.44 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.13 1.90 6.21 -2.39 -0.01 1.88 16 41 H 0.05 1.05 7.06 -2.38 -0.02 1.04 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 0.98 5.79 -2.39 -0.01 0.97 16 44 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.15 344.71 2.09 -69.06 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.96 Total: 14.59 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.88 Total: -26.11 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.14 Total: -77.05 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.64 Total: -27.09 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -71.15 2.09 -69.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.123 kcal (2) G-P(sol) polarization free energy of solvation -71.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds