Wall clock time and date at job start Tue Mar 31 2020 07:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.53005 * 109.46911 * 239.99903 * 2 1 3 5 5 C 1.50699 * 109.47170 * 65.00403 * 4 2 1 6 6 H 1.08003 * 119.99845 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00024 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99758 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47286 * 89.99702 * 9 7 5 11 11 H 1.48500 * 109.46894 * 209.99966 * 9 7 5 12 12 H 1.48506 * 109.47211 * 329.99730 * 9 7 5 13 13 C 1.53000 * 109.46949 * 119.99999 * 2 1 3 14 14 N 1.46896 * 109.47306 * 296.16760 * 13 2 1 15 15 C 1.47015 * 110.99841 * 296.56168 * 14 13 2 16 16 C 1.53100 * 109.25897 * 177.60515 * 15 14 13 17 17 O 1.43020 * 109.25398 * 56.84956 * 16 15 14 18 18 C 1.43018 * 113.74282 * 301.33031 * 17 16 15 19 19 C 1.47019 * 110.99838 * 172.93055 * 14 13 2 20 20 H 1.08996 * 109.50826 * 62.45842 * 19 14 13 21 21 C 1.52996 * 109.50549 * 302.32482 * 19 14 13 22 22 H 1.08997 * 109.97313 * 58.73452 * 21 19 14 23 23 C 1.54284 * 109.98304 * 180.02562 * 21 19 14 24 24 C 1.54988 * 103.75002 * 142.47086 * 23 21 19 25 25 C 1.54889 * 102.33482 * 322.91938 * 24 23 21 26 26 C 1.51443 * 109.98643 * 297.41677 * 21 19 14 27 27 O 1.20761 * 126.34134 * 60.98976 * 26 21 19 28 28 H 1.09003 * 109.47379 * 300.35137 * 1 2 3 29 29 H 1.09002 * 109.47518 * 60.34520 * 1 2 3 30 30 H 1.08998 * 109.47842 * 180.34683 * 1 2 3 31 31 H 1.09007 * 109.46826 * 185.00471 * 4 2 1 32 32 H 1.09000 * 109.46905 * 304.99824 * 4 2 1 33 33 H 0.96997 * 120.00188 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47138 * 176.16206 * 13 2 1 35 35 H 1.08998 * 109.47234 * 56.16913 * 13 2 1 36 36 H 1.09007 * 109.50151 * 57.67594 * 15 14 13 37 37 H 1.08994 * 109.54406 * 297.56561 * 15 14 13 38 38 H 1.08993 * 109.51027 * 176.78367 * 16 15 14 39 39 H 1.09001 * 109.50497 * 296.92093 * 16 15 14 40 40 H 1.08999 * 109.50272 * 298.73850 * 18 17 16 41 41 H 1.08999 * 109.54402 * 178.62656 * 18 17 16 42 42 H 1.08994 * 110.57199 * 261.04102 * 23 21 19 43 43 H 1.09002 * 110.56676 * 23.90650 * 23 21 19 44 44 H 1.08995 * 110.82934 * 81.13027 * 24 23 21 45 45 H 1.08992 * 110.83283 * 204.50644 * 24 23 21 46 46 H 1.09001 * 110.44136 * 156.36098 * 25 24 23 47 47 H 1.08999 * 110.43950 * 278.76168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9634 -1.9884 -3.9028 10 1 2.0241 -3.1326 -4.0200 11 1 3.8124 -1.9182 -5.1191 12 1 3.8250 -2.1757 -2.7078 13 6 2.0399 -0.7213 1.2493 14 7 1.6272 0.0226 2.4469 15 6 2.2402 1.3586 2.4744 16 6 1.7378 2.1193 3.7044 17 8 2.0355 1.3627 4.8810 18 6 1.4537 0.0562 4.8879 19 6 1.9532 -0.7254 3.6699 20 1 3.0329 -0.8567 3.7394 21 6 1.2727 -2.0951 3.6277 22 1 1.6032 -2.6480 2.7484 23 6 1.6071 -2.8896 4.9072 24 6 0.2895 -3.6390 5.2304 25 6 -0.7880 -2.5971 4.8400 26 6 -0.2318 -1.9249 3.5978 27 8 -0.8712 -1.3590 2.7439 28 1 -0.3634 0.5193 0.8868 29 1 -0.3634 0.5085 -0.8931 30 1 -0.3635 -1.0276 0.0062 31 1 3.1262 -0.7996 -1.2056 32 1 1.6052 -1.7199 -1.2951 33 1 1.8927 -0.0453 -5.6799 34 1 3.1278 -0.7812 1.2156 35 1 1.6216 -1.7272 1.2843 36 1 1.9649 1.9039 1.5717 37 1 3.3246 1.2613 2.5245 38 1 2.2330 3.0887 3.7602 39 1 0.6602 2.2641 3.6278 40 1 0.3678 0.1412 4.8457 41 1 1.7427 -0.4668 5.7995 42 1 2.4140 -3.5977 4.7185 43 1 1.8722 -2.2131 5.7197 44 1 0.1965 -4.5391 4.6229 45 1 0.2319 -3.8818 6.2914 46 1 -1.7325 -3.0924 4.6146 47 1 -0.9221 -1.8698 5.6407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639087925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:34 Heat of formation + Delta-G solvation = -86.957527 kcal Electronic energy + Delta-G solvation = -25785.764805 eV Core-core repulsion = 22354.215126 eV Total energy + Delta-G solvation = -3431.549679 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77515 -38.84567 -36.68460 -36.35213 -34.10296 -32.19510 -31.68506 -28.76230 -27.93508 -26.97503 -26.83516 -24.62915 -23.49041 -22.12869 -21.15590 -20.67939 -19.01751 -18.50450 -16.96456 -16.84371 -16.33231 -15.94145 -15.68567 -15.13404 -14.92680 -14.62898 -14.33659 -13.97757 -13.81917 -13.62712 -13.42437 -13.18494 -12.85220 -12.71748 -12.46028 -12.27053 -11.74322 -11.55960 -11.53434 -11.39210 -11.31387 -11.07293 -11.00366 -10.88369 -10.67110 -10.50249 -10.32429 -9.74975 -9.67809 -9.61957 -9.33543 -9.22860 -8.99712 -8.48357 -8.10507 -5.98640 -3.94957 2.05420 3.32916 3.39935 3.43258 3.69840 3.75871 4.10403 4.24611 4.49331 4.49594 4.63040 4.75320 4.82816 4.96861 5.06357 5.08136 5.19469 5.25087 5.29370 5.35032 5.37025 5.46239 5.53388 5.57855 5.62663 5.68977 5.71878 5.78006 5.81994 5.90725 5.95645 5.99743 6.11387 6.38819 6.48516 6.70871 6.95749 6.99453 7.15251 7.17641 7.26484 7.30266 7.39133 7.54308 7.67564 7.86684 8.61766 9.07651 9.64469 11.14975 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.004525 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.209039 B = 6186.155010 C = 6902.966525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 H 0.060 0.940 4 C -0.008 4.008 5 C -0.509 4.509 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.060 3.940 14 N -0.519 5.519 15 C 0.016 3.984 16 C 0.063 3.937 17 O -0.386 6.386 18 C 0.067 3.933 19 C 0.062 3.938 20 H 0.055 0.945 21 C -0.149 4.149 22 H 0.107 0.893 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.187 4.187 26 C 0.368 3.632 27 O -0.402 6.402 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.261 0.739 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -5.350 24.473 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.046 4.046 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.244 5.244 15 C -0.112 4.112 16 C -0.014 4.014 17 O -0.304 6.304 18 C -0.010 4.010 19 C -0.047 4.047 20 H 0.073 0.927 21 C -0.169 4.169 22 H 0.125 0.875 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.224 4.224 26 C 0.239 3.761 27 O -0.270 6.270 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.016 -4.893 23.931 24.447 hybrid contribution 1.378 -1.202 -0.531 1.904 sum 0.362 -6.095 23.400 24.183 Atomic orbital electron populations 1.21506 0.94629 1.00799 1.00385 1.21028 0.96782 0.98814 0.92345 0.92202 1.19613 0.95497 0.95889 0.93632 1.21124 1.35025 1.09548 0.89045 0.90831 1.25017 0.95711 0.96866 0.95963 1.69912 1.47286 1.39354 0.97967 0.86817 0.80634 0.84523 0.77512 1.20395 1.21508 1.19221 1.22385 0.96888 0.97801 0.89648 1.62258 1.58623 1.02325 1.01184 1.22839 0.97109 0.91270 0.99985 1.22724 1.00611 0.94255 0.83791 1.87953 1.74933 1.26738 1.40813 1.22796 0.97557 0.83484 0.97148 1.22108 0.98129 0.92175 0.92308 0.92698 1.22474 0.96805 0.96802 1.00780 0.87492 1.22453 0.98065 0.98895 0.96396 1.22393 0.93805 0.97520 1.01914 1.22951 1.00448 1.00006 0.99032 1.24566 0.90521 0.75622 0.85410 1.90501 1.66703 1.31638 1.38126 0.93394 0.92839 0.94268 0.97149 0.97204 0.92877 0.95578 0.91081 0.88440 0.94246 0.88532 0.92228 0.92742 0.88454 0.90517 0.90430 0.90798 0.90426 0.89268 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.70 37.15 0.32 -2.08 16 2 C -0.07 -1.45 2.19 -90.62 -0.20 -1.65 16 3 H 0.06 1.25 6.25 -51.93 -0.32 0.92 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.69 8.96 -34.44 -0.31 -15.00 16 6 H 0.07 2.28 7.30 -52.48 -0.38 1.90 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 13 C 0.06 1.01 4.11 -3.83 -0.02 0.99 16 14 N -0.52 -7.60 3.17 -226.34 -0.72 -8.31 16 15 C 0.02 0.22 5.41 -3.71 -0.02 0.20 16 16 C 0.06 0.76 7.01 37.21 0.26 1.02 16 17 O -0.39 -4.89 10.83 -35.23 -0.38 -5.27 16 18 C 0.07 0.73 5.77 37.21 0.21 0.94 16 19 C 0.06 0.74 1.81 -67.60 -0.12 0.61 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.15 -1.56 2.33 -90.74 -0.21 -1.77 16 22 H 0.11 1.24 6.19 -51.93 -0.32 0.92 16 23 C -0.12 -0.83 6.22 -25.01 -0.16 -0.99 16 24 C -0.12 -0.73 6.95 -24.68 -0.17 -0.90 16 25 C -0.19 -1.48 6.72 -26.35 -0.18 -1.66 16 26 C 0.37 4.37 5.66 -28.13 -0.16 4.21 16 27 O -0.40 -6.49 17.06 6.00 0.10 -6.38 16 28 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 29 H 0.05 1.22 6.94 -51.93 -0.36 0.86 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 32 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.07 1.20 5.87 -51.93 -0.30 0.89 16 36 H 0.10 1.45 6.21 -51.93 -0.32 1.13 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.62 7.05 -51.93 -0.37 0.26 16 41 H 0.10 0.81 6.22 -51.93 -0.32 0.48 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.46 5.81 -51.93 -0.30 0.16 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -32.95 352.11 -8.51 -41.46 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.99 Total: -2.16 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.94 Total: -14.54 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.06 Total: -35.93 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.28 Total: -11.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.95 -8.51 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.500 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds