Wall clock time and date at job start Tue Mar 31 2020 07:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.53005 * 109.46911 * 239.99903 * 2 1 3 5 5 C 1.50699 * 109.47170 * 65.00403 * 4 2 1 6 6 H 1.08003 * 119.99845 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00024 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99758 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47286 * 89.99702 * 9 7 5 11 11 H 1.48500 * 109.46894 * 209.99966 * 9 7 5 12 12 H 1.48506 * 109.47211 * 329.99730 * 9 7 5 13 13 C 1.53000 * 109.46949 * 119.99999 * 2 1 3 14 14 N 1.46896 * 109.47306 * 296.16760 * 13 2 1 15 15 C 1.47015 * 110.99841 * 296.56168 * 14 13 2 16 16 C 1.53100 * 109.25897 * 177.60515 * 15 14 13 17 17 O 1.43020 * 109.25398 * 56.84956 * 16 15 14 18 18 C 1.43018 * 113.74282 * 301.33031 * 17 16 15 19 19 C 1.47019 * 110.99838 * 172.93055 * 14 13 2 20 20 H 1.08996 * 109.50826 * 62.45842 * 19 14 13 21 21 C 1.52996 * 109.50549 * 302.32482 * 19 14 13 22 22 H 1.08997 * 109.97313 * 58.73452 * 21 19 14 23 23 C 1.54284 * 109.98304 * 180.02562 * 21 19 14 24 24 C 1.54988 * 103.75002 * 142.47086 * 23 21 19 25 25 C 1.54889 * 102.33482 * 322.91938 * 24 23 21 26 26 C 1.51443 * 109.98643 * 297.41677 * 21 19 14 27 27 O 1.20761 * 126.34134 * 60.98976 * 26 21 19 28 28 H 1.09003 * 109.47379 * 300.35137 * 1 2 3 29 29 H 1.09002 * 109.47518 * 60.34520 * 1 2 3 30 30 H 1.08998 * 109.47842 * 180.34683 * 1 2 3 31 31 H 1.09007 * 109.46826 * 185.00471 * 4 2 1 32 32 H 1.09000 * 109.46905 * 304.99824 * 4 2 1 33 33 H 0.96997 * 120.00188 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47138 * 176.16206 * 13 2 1 35 35 H 1.08998 * 109.47234 * 56.16913 * 13 2 1 36 36 H 1.09007 * 109.50151 * 57.67594 * 15 14 13 37 37 H 1.08994 * 109.54406 * 297.56561 * 15 14 13 38 38 H 1.08993 * 109.51027 * 176.78367 * 16 15 14 39 39 H 1.09001 * 109.50497 * 296.92093 * 16 15 14 40 40 H 1.08999 * 109.50272 * 298.73850 * 18 17 16 41 41 H 1.08999 * 109.54402 * 178.62656 * 18 17 16 42 42 H 1.08994 * 110.57199 * 261.04102 * 23 21 19 43 43 H 1.09002 * 110.56676 * 23.90650 * 23 21 19 44 44 H 1.08995 * 110.82934 * 81.13027 * 24 23 21 45 45 H 1.08992 * 110.83283 * 204.50644 * 24 23 21 46 46 H 1.09001 * 110.44136 * 156.36098 * 25 24 23 47 47 H 1.08999 * 110.43950 * 278.76168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9634 -1.9884 -3.9028 10 1 2.0241 -3.1326 -4.0200 11 1 3.8124 -1.9182 -5.1191 12 1 3.8250 -2.1757 -2.7078 13 6 2.0399 -0.7213 1.2493 14 7 1.6272 0.0226 2.4469 15 6 2.2402 1.3586 2.4744 16 6 1.7378 2.1193 3.7044 17 8 2.0355 1.3627 4.8810 18 6 1.4537 0.0562 4.8879 19 6 1.9532 -0.7254 3.6699 20 1 3.0329 -0.8567 3.7394 21 6 1.2727 -2.0951 3.6277 22 1 1.6032 -2.6480 2.7484 23 6 1.6071 -2.8896 4.9072 24 6 0.2895 -3.6390 5.2304 25 6 -0.7880 -2.5971 4.8400 26 6 -0.2318 -1.9249 3.5978 27 8 -0.8712 -1.3590 2.7439 28 1 -0.3634 0.5193 0.8868 29 1 -0.3634 0.5085 -0.8931 30 1 -0.3635 -1.0276 0.0062 31 1 3.1262 -0.7996 -1.2056 32 1 1.6052 -1.7199 -1.2951 33 1 1.8927 -0.0453 -5.6799 34 1 3.1278 -0.7812 1.2156 35 1 1.6216 -1.7272 1.2843 36 1 1.9649 1.9039 1.5717 37 1 3.3246 1.2613 2.5245 38 1 2.2330 3.0887 3.7602 39 1 0.6602 2.2641 3.6278 40 1 0.3678 0.1412 4.8457 41 1 1.7427 -0.4668 5.7995 42 1 2.4140 -3.5977 4.7185 43 1 1.8722 -2.2131 5.7197 44 1 0.1965 -4.5391 4.6229 45 1 0.2319 -3.8818 6.2914 46 1 -1.7325 -3.0924 4.6146 47 1 -0.9221 -1.8698 5.6407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639087925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:34 Heat of formation + Delta-G solvation = -108.342993 kcal Electronic energy + Delta-G solvation = -25786.692149 eV Core-core repulsion = 22354.215126 eV Total energy + Delta-G solvation = -3432.477022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70733 -39.82523 -38.05295 -37.20992 -35.66900 -34.08025 -32.76118 -30.06115 -29.20336 -28.41891 -27.57829 -26.14049 -24.47364 -23.88747 -21.76749 -21.70978 -20.64852 -19.49037 -18.94864 -17.85432 -17.42908 -16.85230 -16.53895 -16.33011 -16.12312 -16.06417 -15.69723 -15.24990 -14.95778 -14.87136 -14.65767 -14.40941 -14.19352 -13.86755 -13.56139 -13.49801 -13.41573 -12.83513 -12.81419 -12.60757 -12.39671 -12.33178 -12.22774 -11.99047 -11.88726 -11.72837 -11.67641 -11.41939 -11.31479 -11.20599 -11.04603 -10.76211 -10.56727 -10.17692 -9.24928 -8.28312 -6.30804 1.16282 1.32661 1.34202 1.46014 2.35113 2.68664 2.84938 3.06502 3.30100 3.53716 3.69543 3.84972 3.92580 4.02659 4.11130 4.13152 4.16278 4.26331 4.36349 4.37483 4.43391 4.47295 4.55276 4.67282 4.69906 4.73566 4.79854 4.82675 4.87022 4.93972 4.97393 5.01320 5.05220 5.07681 5.23037 5.25174 5.36894 5.40924 5.42542 5.49953 5.65689 5.69513 5.99765 6.03415 6.14947 6.32574 6.75992 6.78863 7.32422 8.88705 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.004525 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.209039 B = 6186.155010 C = 6902.966525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.066 4.066 3 H 0.051 0.949 4 C -0.003 4.003 5 C -0.518 4.518 6 H 0.032 0.968 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.247 1.247 13 C 0.075 3.925 14 N -0.530 5.530 15 C 0.015 3.985 16 C 0.069 3.931 17 O -0.393 6.393 18 C 0.068 3.932 19 C 0.062 3.938 20 H 0.059 0.941 21 C -0.151 4.151 22 H 0.093 0.907 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.182 4.182 26 C 0.361 3.639 27 O -0.456 6.456 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.033 0.967 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.265 0.735 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.117 0.883 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -7.560 27.708 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.041 4.041 5 C -0.556 4.556 6 H 0.050 0.950 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.171 1.171 13 C -0.053 4.053 14 N -0.255 5.255 15 C -0.113 4.113 16 C -0.008 4.008 17 O -0.312 6.312 18 C -0.009 4.009 19 C -0.047 4.047 20 H 0.077 0.923 21 C -0.171 4.171 22 H 0.111 0.889 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.219 4.219 26 C 0.235 3.765 27 O -0.328 6.328 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.134 0.866 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.149 0.851 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.372 -7.113 27.210 28.127 hybrid contribution 0.879 -0.427 -1.528 1.814 sum 1.251 -7.540 25.682 26.796 Atomic orbital electron populations 1.21297 0.95074 0.99971 0.99100 1.20890 0.96196 0.98468 0.92925 0.93062 1.19535 0.95724 0.95543 0.93310 1.21404 1.34327 1.08667 0.91239 0.94952 1.25990 0.96987 1.00953 0.95430 1.70070 1.49008 1.41653 0.98707 0.85691 0.79336 0.79484 0.78329 1.19411 1.20856 1.17085 1.22062 0.96726 0.97459 0.89042 1.62189 1.59001 1.02715 1.01568 1.22842 0.97146 0.91093 1.00238 1.22706 1.00324 0.94833 0.82940 1.87947 1.75102 1.27512 1.40618 1.22968 0.97110 0.82875 0.97917 1.22231 0.98562 0.92757 0.91163 0.92300 1.22550 0.95828 0.96308 1.02404 0.88875 1.22471 0.98841 0.98919 0.94668 1.22418 0.92224 0.96628 1.03535 1.22976 1.00994 1.00584 0.97371 1.25279 0.91349 0.74141 0.85685 1.90478 1.67882 1.34153 1.40336 0.92489 0.96028 0.94789 0.96551 0.96952 0.92621 0.95247 0.90911 0.90244 0.94152 0.86554 0.92934 0.93468 0.85099 0.89331 0.88798 0.90851 0.87738 0.89226 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.21 8.70 71.98 0.63 -3.59 16 2 C -0.07 -2.76 2.19 -10.80 -0.02 -2.79 16 3 H 0.05 2.22 6.25 -2.39 -0.01 2.21 16 4 C 0.00 -0.16 3.52 29.85 0.10 -0.06 16 5 C -0.52 -30.96 8.96 25.60 0.23 -30.73 16 6 H 0.03 2.14 7.30 -2.91 -0.02 2.11 16 7 C 0.00 0.15 5.47 84.66 0.46 0.62 16 8 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 9 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 13 C 0.07 2.49 4.11 86.30 0.35 2.84 16 14 N -0.53 -15.19 3.17 -869.99 -2.76 -17.95 16 15 C 0.01 0.41 5.41 86.31 0.47 0.87 16 16 C 0.07 1.59 7.01 72.02 0.50 2.09 16 17 O -0.39 -9.03 10.83 -148.98 -1.61 -10.64 16 18 C 0.07 1.28 5.77 72.02 0.42 1.70 16 19 C 0.06 1.33 1.81 44.93 0.08 1.41 16 20 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 21 C -0.15 -2.84 2.33 -10.87 -0.03 -2.86 16 22 H 0.09 2.02 6.19 -2.39 -0.01 2.01 16 23 C -0.11 -1.10 6.22 31.71 0.20 -0.90 16 24 C -0.11 -0.91 6.95 31.92 0.22 -0.69 16 25 C -0.18 -2.39 6.72 30.84 0.21 -2.18 16 26 C 0.36 8.11 5.66 29.69 0.17 8.28 16 27 O -0.46 -14.87 17.06 -1.45 -0.02 -14.89 16 28 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 29 H 0.02 1.03 6.94 -2.39 -0.02 1.01 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 32 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 33 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 2.41 5.87 -2.39 -0.01 2.40 16 36 H 0.08 2.43 6.21 -2.38 -0.01 2.42 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 0.98 7.05 -2.39 -0.02 0.96 16 41 H 0.13 1.58 6.22 -2.39 -0.01 1.57 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.64 5.81 -2.39 -0.01 0.63 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -74.30 352.11 2.66 -71.63 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.89 Total: 11.54 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.99 Total: -25.98 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.46 Total: -79.24 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.64 Total: -25.53 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -74.30 2.66 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.709 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds