Wall clock time and date at job start Tue Mar 31 2020 07:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47046 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00593 * 2 1 3 5 5 C 1.50699 * 109.47567 * 65.00062 * 4 2 1 6 6 H 1.08003 * 119.99835 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00172 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46982 * 60.00008 * 9 7 5 11 11 H 1.48507 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47366 * 299.99735 * 9 7 5 13 13 C 1.52994 * 109.47398 * 120.00707 * 2 1 3 14 14 N 1.46901 * 109.46844 * 293.94169 * 13 2 1 15 15 C 1.47016 * 111.00297 * 87.13437 * 14 13 2 16 16 C 1.53093 * 109.26020 * 182.39383 * 15 14 13 17 17 O 1.43014 * 109.25739 * 303.15071 * 16 15 14 18 18 C 1.43014 * 113.74129 * 58.66786 * 17 16 15 19 19 C 1.47009 * 110.99994 * 210.76791 * 14 13 2 20 20 H 1.09002 * 109.51040 * 297.54340 * 19 14 13 21 21 C 1.53001 * 109.50877 * 57.67064 * 19 14 13 22 22 H 1.08998 * 109.97268 * 295.47123 * 21 19 14 23 23 C 1.54283 * 109.98046 * 56.74041 * 21 19 14 24 24 C 1.54991 * 103.74835 * 142.47185 * 23 21 19 25 25 C 1.54885 * 102.33320 * 322.91554 * 24 23 21 26 26 C 1.51447 * 109.98827 * 174.19531 * 21 19 14 27 27 O 1.20764 * 126.33429 * 60.98652 * 26 21 19 28 28 H 1.09000 * 109.46553 * 313.17416 * 1 2 3 29 29 H 1.08997 * 109.47173 * 73.16466 * 1 2 3 30 30 H 1.08991 * 109.47192 * 193.16682 * 1 2 3 31 31 H 1.09000 * 109.46955 * 185.00294 * 4 2 1 32 32 H 1.09002 * 109.47462 * 304.99939 * 4 2 1 33 33 H 0.96995 * 120.00012 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47174 * 53.93844 * 13 2 1 35 35 H 1.08993 * 109.47356 * 173.94357 * 13 2 1 36 36 H 1.09004 * 109.50355 * 302.32566 * 15 14 13 37 37 H 1.08998 * 109.50531 * 62.45625 * 15 14 13 38 38 H 1.08999 * 109.50956 * 63.08357 * 16 15 14 39 39 H 1.08998 * 109.50545 * 183.21455 * 16 15 14 40 40 H 1.09001 * 109.50592 * 61.26710 * 18 17 16 41 41 H 1.08998 * 109.50488 * 181.35096 * 18 17 16 42 42 H 1.08994 * 110.56971 * 261.03854 * 23 21 19 43 43 H 1.08997 * 110.56968 * 23.91161 * 23 21 19 44 44 H 1.09002 * 110.82891 * 81.12467 * 24 23 21 45 45 H 1.09000 * 110.83340 * 204.70169 * 24 23 21 46 46 H 1.09003 * 110.44140 * 156.36012 * 25 24 23 47 47 H 1.08995 * 110.44120 * 278.75672 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 1 1.0799 0.9744 -2.3757 7 6 1.9931 -0.4015 -3.7284 8 7 2.6770 -1.5180 -3.8513 9 14 1.4982 0.5631 -5.2497 10 1 2.0894 1.9238 -5.1869 11 1 1.9943 -0.1363 -6.4622 12 1 0.0182 0.6686 -5.3092 13 6 2.0401 -0.7214 1.2491 14 7 1.6734 0.0503 2.4441 15 6 0.3304 -0.3165 2.9166 16 6 -0.0346 0.5512 4.1240 17 8 0.9595 0.3889 5.1392 18 6 2.2795 0.7377 4.7135 19 6 2.6679 -0.1280 3.5120 20 1 2.6960 -1.1755 3.8121 21 6 4.0469 0.2952 3.0018 22 1 4.3644 -0.3656 2.1953 23 6 3.9988 1.7536 2.5005 24 6 5.3657 2.3387 2.9380 25 6 5.5908 1.6614 4.3126 26 6 5.0530 0.2519 4.1329 27 8 5.3683 -0.7223 4.7732 28 1 -0.3632 0.7032 0.7495 29 1 -0.3633 0.2976 -0.9836 30 1 -0.3633 -1.0006 0.2341 31 1 3.1262 -0.7995 -1.2058 32 1 1.6053 -1.7197 -1.2954 33 1 2.9249 -1.8405 -4.7319 34 1 1.5909 -1.7129 1.3049 35 1 3.1246 -0.8162 1.1965 36 1 -0.3936 -0.1525 2.1184 37 1 0.3211 -1.3670 3.2071 38 1 -0.0777 1.5972 3.8207 39 1 -1.0054 0.2439 4.5127 40 1 2.3037 1.7892 4.4274 41 1 2.9821 0.5662 5.5289 42 1 3.8994 1.7825 1.4155 43 1 3.1808 2.2950 2.9757 44 1 6.1500 2.0588 2.2348 45 1 5.3074 3.4219 3.0445 46 1 6.6533 1.6350 4.5545 47 1 5.0370 2.1863 5.0909 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639087926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:37 Heat of formation + Delta-G solvation = -88.731958 kcal Electronic energy + Delta-G solvation = -25556.807681 eV Core-core repulsion = 22125.181057 eV Total energy + Delta-G solvation = -3431.626624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79152 -39.07271 -36.81757 -36.19703 -34.08050 -32.27745 -31.61256 -28.60888 -27.88499 -26.93558 -26.75693 -24.57325 -23.44303 -22.42615 -21.60138 -20.02780 -19.08047 -18.73025 -17.08453 -16.64827 -16.18978 -15.83492 -15.62902 -15.13032 -14.96926 -14.71572 -14.44720 -14.33194 -14.06015 -13.59057 -13.49423 -12.92978 -12.85227 -12.42558 -12.24241 -12.14053 -11.74295 -11.73390 -11.48655 -11.37659 -11.24136 -10.94378 -10.81488 -10.75278 -10.68086 -10.62106 -10.23463 -10.10105 -9.77489 -9.65906 -9.49299 -9.08487 -8.97700 -8.34907 -8.15958 -5.99666 -4.01054 1.76371 3.32406 3.37407 3.39276 3.69912 3.72722 4.18886 4.34894 4.46375 4.53647 4.74947 4.83016 4.88904 4.99023 5.10560 5.17402 5.28074 5.29565 5.36080 5.36787 5.45405 5.53261 5.59785 5.63712 5.69563 5.76414 5.80021 5.86163 5.87029 5.99836 6.07541 6.20535 6.22762 6.29290 6.43771 6.53933 6.87545 7.00976 7.12139 7.13468 7.18064 7.32252 7.34746 7.67030 7.82968 8.00286 8.43811 9.05215 9.62486 11.11728 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.004330 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.137526 B = 6465.248088 C = 7433.497562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.053 3.947 14 N -0.521 5.521 15 C 0.003 3.997 16 C 0.062 3.938 17 O -0.386 6.386 18 C 0.066 3.934 19 C 0.064 3.936 20 H 0.052 0.948 21 C -0.148 4.148 22 H 0.112 0.888 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.183 4.183 26 C 0.372 3.628 27 O -0.445 6.445 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 7.399 16.790 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.074 4.074 14 N -0.246 5.246 15 C -0.124 4.124 16 C -0.015 4.015 17 O -0.304 6.304 18 C -0.011 4.011 19 C -0.045 4.045 20 H 0.070 0.930 21 C -0.167 4.167 22 H 0.129 0.871 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.221 4.221 26 C 0.246 3.754 27 O -0.317 6.317 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.848 7.177 17.061 18.529 hybrid contribution -0.122 -0.447 -1.122 1.214 sum 0.726 6.731 15.939 17.317 Atomic orbital electron populations 1.21931 0.96846 0.99270 1.01401 1.21147 0.94960 0.99800 0.93344 0.91676 1.19116 0.95980 0.95451 0.90465 1.21174 1.34723 1.08284 0.90926 0.92592 1.25011 0.95319 0.95053 0.99064 1.69952 1.38938 1.21232 1.23501 0.86708 0.78878 0.80138 0.82566 1.20284 1.21402 1.20310 1.22527 1.00484 0.94772 0.89601 1.62302 1.00706 1.57098 1.04536 1.23221 0.92679 0.97793 0.98743 1.22719 0.91356 0.99570 0.87810 1.87965 1.16471 1.88412 1.37596 1.22803 0.84403 0.98517 0.95376 1.22052 0.90998 0.98821 0.92672 0.93023 1.22468 0.94527 1.00921 0.98784 0.87079 1.22311 0.96692 0.92356 1.02861 1.22502 0.98424 1.00368 0.94853 1.22934 1.03117 0.95728 1.00285 1.25066 0.79642 0.89639 0.81005 1.90419 1.56207 1.39386 1.45678 0.94057 0.91672 0.94487 0.96853 0.96869 0.93036 0.94633 0.91159 0.87435 0.94409 0.92196 0.88719 0.91538 0.89511 0.89539 0.90048 0.90725 0.90293 0.89211 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.61 37.16 0.28 -2.15 16 2 C -0.07 -1.40 2.54 -90.62 -0.23 -1.63 16 3 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -13.86 8.22 -34.44 -0.28 -14.15 16 6 H 0.06 1.47 7.16 -52.48 -0.38 1.09 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.05 0.87 4.51 -3.83 -0.02 0.85 16 14 N -0.52 -7.18 3.90 -226.35 -0.88 -8.06 16 15 C 0.00 0.04 5.15 -3.71 -0.02 0.02 16 16 C 0.06 0.70 7.01 37.21 0.26 0.96 16 17 O -0.39 -5.04 10.83 -35.23 -0.38 -5.42 16 18 C 0.07 0.77 5.73 37.21 0.21 0.98 16 19 C 0.06 0.82 1.85 -67.60 -0.13 0.70 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.15 -1.76 2.32 -90.73 -0.21 -1.97 16 22 H 0.11 1.48 6.13 -51.93 -0.32 1.16 16 23 C -0.10 -1.09 5.77 -25.01 -0.14 -1.24 16 24 C -0.12 -1.03 6.95 -24.69 -0.17 -1.20 16 25 C -0.18 -1.54 6.72 -26.28 -0.18 -1.71 16 26 C 0.37 4.39 5.76 -28.06 -0.16 4.23 16 27 O -0.44 -6.73 17.99 6.00 0.11 -6.62 16 28 H 0.04 0.63 6.27 -51.93 -0.33 0.30 16 29 H 0.06 1.29 6.68 -51.93 -0.35 0.94 16 30 H 0.04 0.63 7.78 -51.93 -0.40 0.23 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.04 0.61 7.72 -51.93 -0.40 0.21 16 35 H 0.07 1.16 5.38 -51.93 -0.28 0.88 16 36 H 0.11 1.38 4.31 -51.93 -0.22 1.16 16 37 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.70 6.17 -51.93 -0.32 0.38 16 41 H 0.09 0.97 7.23 -51.93 -0.38 0.60 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.82 5.92 -51.93 -0.31 0.51 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -30.52 353.63 -9.00 -39.52 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.88 Total: -0.94 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.00 Total: -14.27 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.15 Total: -33.83 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.27 Total: -12.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.52 -9.00 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.210 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds