Wall clock time and date at job start Tue Mar 31 2020 07:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47046 * 2 1 4 4 C 1.53004 * 109.46610 * 240.00593 * 2 1 3 5 5 C 1.50699 * 109.47567 * 65.00062 * 4 2 1 6 6 H 1.08003 * 119.99835 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00172 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46982 * 60.00008 * 9 7 5 11 11 H 1.48507 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47366 * 299.99735 * 9 7 5 13 13 C 1.52994 * 109.47398 * 120.00707 * 2 1 3 14 14 N 1.46901 * 109.46844 * 293.94169 * 13 2 1 15 15 C 1.47016 * 111.00297 * 87.13437 * 14 13 2 16 16 C 1.53093 * 109.26020 * 182.39383 * 15 14 13 17 17 O 1.43014 * 109.25739 * 303.15071 * 16 15 14 18 18 C 1.43014 * 113.74129 * 58.66786 * 17 16 15 19 19 C 1.47009 * 110.99994 * 210.76791 * 14 13 2 20 20 H 1.09002 * 109.51040 * 297.54340 * 19 14 13 21 21 C 1.53001 * 109.50877 * 57.67064 * 19 14 13 22 22 H 1.08998 * 109.97268 * 295.47123 * 21 19 14 23 23 C 1.54283 * 109.98046 * 56.74041 * 21 19 14 24 24 C 1.54991 * 103.74835 * 142.47185 * 23 21 19 25 25 C 1.54885 * 102.33320 * 322.91554 * 24 23 21 26 26 C 1.51447 * 109.98827 * 174.19531 * 21 19 14 27 27 O 1.20764 * 126.33429 * 60.98652 * 26 21 19 28 28 H 1.09000 * 109.46553 * 313.17416 * 1 2 3 29 29 H 1.08997 * 109.47173 * 73.16466 * 1 2 3 30 30 H 1.08991 * 109.47192 * 193.16682 * 1 2 3 31 31 H 1.09000 * 109.46955 * 185.00294 * 4 2 1 32 32 H 1.09002 * 109.47462 * 304.99939 * 4 2 1 33 33 H 0.96995 * 120.00012 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47174 * 53.93844 * 13 2 1 35 35 H 1.08993 * 109.47356 * 173.94357 * 13 2 1 36 36 H 1.09004 * 109.50355 * 302.32566 * 15 14 13 37 37 H 1.08998 * 109.50531 * 62.45625 * 15 14 13 38 38 H 1.08999 * 109.50956 * 63.08357 * 16 15 14 39 39 H 1.08998 * 109.50545 * 183.21455 * 16 15 14 40 40 H 1.09001 * 109.50592 * 61.26710 * 18 17 16 41 41 H 1.08998 * 109.50488 * 181.35096 * 18 17 16 42 42 H 1.08994 * 110.56971 * 261.03854 * 23 21 19 43 43 H 1.08997 * 110.56968 * 23.91161 * 23 21 19 44 44 H 1.09002 * 110.82891 * 81.12467 * 24 23 21 45 45 H 1.09000 * 110.83340 * 204.70169 * 24 23 21 46 46 H 1.09003 * 110.44140 * 156.36012 * 25 24 23 47 47 H 1.08995 * 110.44120 * 278.75672 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 1 1.0799 0.9744 -2.3757 7 6 1.9931 -0.4015 -3.7284 8 7 2.6770 -1.5180 -3.8513 9 14 1.4982 0.5631 -5.2497 10 1 2.0894 1.9238 -5.1869 11 1 1.9943 -0.1363 -6.4622 12 1 0.0182 0.6686 -5.3092 13 6 2.0401 -0.7214 1.2491 14 7 1.6734 0.0503 2.4441 15 6 0.3304 -0.3165 2.9166 16 6 -0.0346 0.5512 4.1240 17 8 0.9595 0.3889 5.1392 18 6 2.2795 0.7377 4.7135 19 6 2.6679 -0.1280 3.5120 20 1 2.6960 -1.1755 3.8121 21 6 4.0469 0.2952 3.0018 22 1 4.3644 -0.3656 2.1953 23 6 3.9988 1.7536 2.5005 24 6 5.3657 2.3387 2.9380 25 6 5.5908 1.6614 4.3126 26 6 5.0530 0.2519 4.1329 27 8 5.3683 -0.7223 4.7732 28 1 -0.3632 0.7032 0.7495 29 1 -0.3633 0.2976 -0.9836 30 1 -0.3633 -1.0006 0.2341 31 1 3.1262 -0.7995 -1.2058 32 1 1.6053 -1.7197 -1.2954 33 1 2.9249 -1.8405 -4.7319 34 1 1.5909 -1.7129 1.3049 35 1 3.1246 -0.8162 1.1965 36 1 -0.3936 -0.1525 2.1184 37 1 0.3211 -1.3670 3.2071 38 1 -0.0777 1.5972 3.8207 39 1 -1.0054 0.2439 4.5127 40 1 2.3037 1.7892 4.4274 41 1 2.9821 0.5662 5.5289 42 1 3.8994 1.7825 1.4155 43 1 3.1808 2.2950 2.9757 44 1 6.1500 2.0588 2.2348 45 1 5.3074 3.4219 3.0445 46 1 6.6533 1.6350 4.5545 47 1 5.0370 2.1863 5.0909 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639087926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:36 Heat of formation + Delta-G solvation = -107.579143 kcal Electronic energy + Delta-G solvation = -25557.624957 eV Core-core repulsion = 22125.181057 eV Total energy + Delta-G solvation = -3432.443899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80072 -40.10841 -38.05381 -37.26199 -35.63163 -33.97652 -32.76888 -29.76918 -28.95027 -28.68185 -27.66779 -26.05093 -24.52988 -24.05895 -22.47708 -20.96839 -20.67172 -19.76857 -18.47321 -18.08013 -17.49978 -16.77984 -16.56573 -16.51306 -16.15673 -15.99410 -15.69461 -15.48186 -15.33695 -14.85077 -14.43305 -14.35364 -14.04875 -13.81647 -13.52903 -13.38472 -13.34334 -12.95405 -12.76262 -12.63186 -12.47326 -12.40563 -12.12910 -11.99452 -11.83755 -11.70175 -11.60440 -11.52701 -11.37218 -11.04018 -10.96879 -10.56066 -10.50729 -10.33358 -9.38218 -8.15155 -6.24046 0.81337 1.42180 1.44407 1.51970 2.43096 2.62776 2.82021 3.18743 3.24258 3.44313 3.62518 3.83042 3.87364 4.00583 4.07971 4.12504 4.21146 4.28996 4.36516 4.39228 4.45799 4.47592 4.54354 4.61084 4.65339 4.75458 4.81077 4.84995 4.89523 4.92715 4.96511 5.04540 5.08013 5.21641 5.25142 5.36637 5.41417 5.46866 5.54313 5.60175 5.80768 5.91291 5.94595 6.03705 6.13896 6.32729 6.41478 6.92227 7.44377 8.96705 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.004330 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.137526 B = 6465.248088 C = 7433.497562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.060 4.060 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.524 4.524 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.065 3.935 14 N -0.513 5.513 15 C 0.000 4.000 16 C 0.065 3.935 17 O -0.401 6.401 18 C 0.070 3.930 19 C 0.066 3.934 20 H 0.025 0.975 21 C -0.151 4.151 22 H 0.088 0.912 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.172 4.172 26 C 0.373 3.627 27 O -0.485 6.485 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.038 0.962 31 H -0.015 1.015 32 H -0.017 1.017 33 H 0.260 0.740 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 10.347 17.859 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.192 1.192 13 C -0.063 4.063 14 N -0.238 5.238 15 C -0.128 4.128 16 C -0.011 4.011 17 O -0.319 6.319 18 C -0.006 4.006 19 C -0.043 4.043 20 H 0.043 0.957 21 C -0.170 4.170 22 H 0.106 0.894 23 C -0.137 4.137 24 C -0.153 4.153 25 C -0.209 4.209 26 C 0.250 3.750 27 O -0.360 6.360 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.001 0.999 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.039 10.151 18.139 20.786 hybrid contribution 0.125 -1.428 -1.446 2.036 sum 0.165 8.723 16.693 18.836 Atomic orbital electron populations 1.21846 0.95290 1.00265 1.01203 1.20905 0.96100 0.99019 0.91926 0.91634 1.19007 0.94079 0.94413 0.92970 1.21588 1.34219 1.08536 0.91819 0.91772 1.25934 0.95314 0.96019 1.02630 1.70103 1.40425 1.23104 1.24221 0.85594 0.78928 0.78878 0.78228 1.19057 1.21410 1.19233 1.22227 0.99870 0.94083 0.90099 1.62258 1.01597 1.55936 1.03966 1.23311 0.91900 0.97779 0.99776 1.22843 0.91808 0.99857 0.86629 1.87955 1.17051 1.88623 1.38318 1.22846 0.84185 0.99054 0.94559 1.22066 0.91344 0.97891 0.93023 0.95733 1.22496 0.94248 1.01771 0.98531 0.89411 1.22258 0.98663 0.91194 1.01561 1.22502 0.96645 1.01737 0.94458 1.22949 1.04053 0.92829 1.01067 1.25488 0.78861 0.90786 0.79848 1.90407 1.57448 1.41123 1.47001 0.90802 0.93782 0.94339 0.99650 0.99895 0.93090 0.95909 0.91893 0.87161 0.95554 0.90841 0.86550 0.89449 0.88956 0.91575 0.88943 0.91176 0.87679 0.87934 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.61 71.98 0.55 -3.93 16 2 C -0.06 -2.34 2.54 -10.79 -0.03 -2.37 16 3 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.52 -28.76 8.22 25.60 0.21 -28.55 16 6 H 0.06 3.35 7.16 -2.91 -0.02 3.33 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.06 2.19 4.51 86.30 0.39 2.58 16 14 N -0.51 -13.86 3.90 -870.03 -3.39 -17.25 16 15 C 0.00 0.00 5.15 86.31 0.44 0.44 16 16 C 0.07 1.29 7.01 72.01 0.50 1.80 16 17 O -0.40 -9.55 10.83 -148.98 -1.61 -11.16 16 18 C 0.07 1.50 5.73 72.02 0.41 1.91 16 19 C 0.07 1.69 1.85 44.93 0.08 1.77 16 20 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 21 C -0.15 -3.61 2.32 -10.87 -0.03 -3.64 16 22 H 0.09 2.51 6.13 -2.39 -0.01 2.49 16 23 C -0.10 -1.92 5.77 31.71 0.18 -1.74 16 24 C -0.12 -1.61 6.95 31.92 0.22 -1.39 16 25 C -0.17 -2.40 6.72 30.88 0.21 -2.19 16 26 C 0.37 8.57 5.76 29.73 0.17 8.74 16 27 O -0.48 -14.86 17.99 -1.46 -0.03 -14.88 16 28 H 0.07 2.08 6.27 -2.39 -0.01 2.06 16 29 H 0.04 1.71 6.68 -2.39 -0.02 1.69 16 30 H 0.04 1.30 7.78 -2.39 -0.02 1.28 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.02 0.82 7.72 -2.39 -0.02 0.80 16 35 H 0.06 2.22 5.38 -2.39 -0.01 2.21 16 36 H 0.11 2.61 4.31 -2.38 -0.01 2.60 16 37 H 0.03 0.71 8.11 -2.39 -0.02 0.69 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 1.52 6.17 -2.39 -0.01 1.50 16 41 H 0.09 1.88 7.23 -2.39 -0.02 1.86 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.58 5.92 -2.39 -0.01 1.57 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.17 353.63 2.15 -66.02 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.94 Total: 12.69 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.92 Total: -24.38 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -3.10 Total: -73.98 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.64 Total: -26.05 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.17 2.15 -66.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639087926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.559 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds