Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47416 * 2 1 4 4 O 1.20762 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00479 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.58327 * 16.23190 * 5 3 2 7 7 C 1.53192 * 109.58749 * 136.51063 * 5 3 2 8 8 C 1.53041 * 109.30984 * 174.42174 * 7 5 3 9 9 C 1.53038 * 109.53884 * 298.63688 * 8 7 5 10 10 C 1.53189 * 109.31012 * 61.36835 * 9 8 7 11 11 N 1.46920 * 109.58767 * 255.80544 * 5 3 2 12 12 C 1.34781 * 120.63006 * 6.62470 * 11 5 3 13 13 O 1.21282 * 119.99853 * 5.65535 * 12 11 5 14 14 C 1.50699 * 119.99596 * 185.65931 * 12 11 5 15 15 C 1.53004 * 109.46793 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47351 * 179.97438 * 15 14 12 17 17 C 1.52991 * 109.47465 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47527 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99936 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00643 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99352 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47343 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47392 * 120.00267 * 22 20 18 25 25 H 1.48503 * 109.47393 * 240.00418 * 22 20 18 26 26 H 1.08991 * 109.47281 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46915 * 299.99669 * 1 2 3 29 29 H 1.09002 * 109.46683 * 239.99594 * 2 1 3 30 30 H 1.09005 * 109.47324 * 119.99906 * 2 1 3 31 31 H 1.09008 * 109.49671 * 54.47592 * 7 5 3 32 32 H 1.08992 * 109.52870 * 294.39937 * 7 5 3 33 33 H 1.09005 * 109.45442 * 178.61969 * 8 7 5 34 34 H 1.08999 * 109.45821 * 58.66438 * 8 7 5 35 35 H 1.09007 * 109.49608 * 181.31717 * 9 8 7 36 36 H 1.09001 * 109.50009 * 301.41306 * 9 8 7 37 37 H 1.09005 * 109.58844 * 65.15038 * 10 9 8 38 38 H 1.09004 * 109.58456 * 185.57184 * 10 9 8 39 39 H 1.08994 * 109.47384 * 299.99799 * 14 12 11 40 40 H 1.08997 * 109.47547 * 60.00208 * 14 12 11 41 41 H 1.08994 * 109.47321 * 300.00242 * 15 14 12 42 42 H 1.09000 * 109.47020 * 60.00264 * 15 14 12 43 43 H 1.09003 * 109.47163 * 300.01120 * 16 15 14 44 44 H 1.09000 * 109.46534 * 60.00345 * 16 15 14 45 45 H 1.09004 * 109.47218 * 300.00758 * 17 16 15 46 46 H 1.09000 * 109.47322 * 60.00043 * 17 16 15 47 47 H 0.97004 * 119.99874 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2476 2.3386 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0533 0.7936 -0.2880 7 6 3.8272 2.8196 -0.9938 8 6 5.3085 3.1895 -0.8890 9 6 5.6111 3.6951 0.5234 10 6 5.3182 2.5815 1.5337 11 7 3.9368 2.1197 1.3412 12 6 3.0739 2.0848 2.3760 13 8 1.9694 1.6060 2.2286 14 6 3.4816 2.6408 3.7160 15 6 2.3277 2.4792 4.7077 16 6 2.7417 3.0431 6.0684 17 6 1.5881 2.8809 7.0601 18 6 1.9957 3.4368 8.4001 19 1 2.9791 3.8636 8.5313 20 6 1.1128 3.4017 9.4587 21 7 -0.0848 2.8824 9.2989 22 14 1.6178 4.0915 11.1194 23 1 3.0052 4.6146 11.0371 24 1 0.6961 5.1921 11.4994 25 1 1.5536 3.0167 12.1422 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2169 3.6922 -0.7604 32 1 3.6071 2.4824 -2.0066 33 1 5.5394 3.9718 -1.6121 34 1 5.9179 2.3104 -1.0985 35 1 6.6611 3.9803 0.5905 36 1 4.9841 4.5594 0.7425 37 1 6.0066 1.7518 1.3728 38 1 5.4371 2.9665 2.5465 39 1 4.3547 2.1012 4.0829 40 1 3.7252 3.6981 3.6119 41 1 1.4549 3.0190 4.3406 42 1 2.0837 1.4220 4.8120 43 1 3.6145 2.5029 6.4352 44 1 2.9860 4.1002 5.9644 45 1 0.7151 3.4208 6.6934 46 1 1.3442 1.8236 7.1640 47 1 -0.7059 2.8573 10.0436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000644049861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -103.873262 kcal Electronic energy + Delta-G solvation = -24517.393344 eV Core-core repulsion = 21085.110144 eV Total energy + Delta-G solvation = -3432.283200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10237 -38.64071 -37.61256 -34.94315 -33.26874 -32.85949 -32.54914 -31.73038 -29.64957 -26.79618 -25.52951 -24.81674 -23.25485 -22.40645 -20.89213 -20.10958 -19.77849 -18.81676 -17.10480 -16.45693 -16.17728 -16.10736 -15.66575 -15.07347 -14.96813 -14.60437 -14.42637 -14.18571 -14.02551 -13.76447 -13.33853 -13.24509 -12.70921 -12.57207 -12.21811 -12.16214 -11.86903 -11.69280 -11.64948 -11.59067 -11.46338 -11.22663 -11.08909 -11.05630 -10.98688 -10.54416 -10.47311 -10.39828 -9.76656 -9.60950 -9.38406 -9.21602 -8.96686 -8.91022 -8.29715 -5.94180 -3.96677 1.99969 2.56079 2.92372 3.33850 3.40986 3.44847 3.77859 4.33246 4.41938 4.49706 4.55708 4.64716 4.72653 4.86100 5.00127 5.06307 5.14307 5.16813 5.24452 5.28090 5.30726 5.37618 5.41285 5.43982 5.51677 5.61255 5.70148 5.72862 5.82254 5.86842 5.96038 6.03141 6.12794 6.18650 6.29635 6.33085 6.54636 6.83904 7.00623 7.13773 7.22140 7.70733 7.75514 7.91201 8.06265 8.07817 8.48972 9.11248 9.66958 11.17201 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.003087 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.058828 B = 9068.796156 C =10199.199632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.378 3.622 4 O -0.450 6.450 5 C 0.095 3.905 6 H 0.089 0.911 7 C -0.126 4.126 8 C -0.117 4.117 9 C -0.139 4.139 10 C 0.107 3.893 11 N -0.608 5.608 12 C 0.512 3.488 13 O -0.510 6.510 14 C -0.133 4.133 15 C -0.103 4.103 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.570 -3.806 -24.055 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.252 3.748 4 O -0.323 6.323 5 C -0.009 4.009 6 H 0.107 0.893 7 C -0.165 4.165 8 C -0.155 4.155 9 C -0.177 4.177 10 C -0.015 4.015 11 N -0.345 5.345 12 C 0.302 3.698 13 O -0.386 6.386 14 C -0.172 4.172 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.558 4.558 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.378 -3.610 -24.026 27.267 hybrid contribution 0.471 0.295 0.945 1.097 sum 12.849 -3.315 -23.081 26.623 Atomic orbital electron populations 1.21514 0.93703 1.01234 1.03095 1.21892 0.98602 0.95675 1.03323 1.23923 0.89039 0.91548 0.70240 1.90371 1.58052 1.47475 1.36452 1.21799 0.96382 0.98486 0.84248 0.89308 1.21860 0.97437 0.98884 0.98275 1.21497 0.95574 1.01382 0.97017 1.21955 1.02238 0.98573 0.94918 1.21823 0.81709 0.97189 1.00822 1.48291 1.12632 1.66572 1.07016 1.21326 0.84197 0.77893 0.86340 1.90652 1.21348 1.45291 1.81318 1.21794 1.02025 1.02084 0.91318 1.21475 0.95974 1.02289 0.94412 1.21642 1.00513 0.99044 0.93507 1.19093 0.92800 0.97180 0.92656 1.21316 0.99933 1.39094 0.95447 0.92712 1.25046 0.95020 0.95568 0.98978 1.69988 1.06343 1.45551 1.31541 0.86556 0.78570 0.78745 0.84237 1.19778 1.21055 1.21054 0.92805 0.92626 0.91423 0.89975 0.88637 0.90299 0.90687 0.91263 0.91611 0.90349 0.91095 0.90985 0.88770 0.89010 0.88964 0.91724 0.91772 0.93483 0.93493 0.96591 0.96601 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 37.16 0.34 -1.34 16 2 C -0.16 -1.74 5.82 -27.89 -0.16 -1.90 16 3 C 0.38 4.93 3.52 -29.04 -0.10 4.83 16 4 O -0.45 -7.65 15.04 -16.56 -0.25 -7.90 16 5 C 0.09 0.95 3.26 -68.75 -0.22 0.72 16 6 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 7 C -0.13 -1.07 5.21 -26.61 -0.14 -1.21 16 8 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 9 C -0.14 -0.88 6.08 -26.61 -0.16 -1.04 16 10 C 0.11 0.78 6.35 -3.71 -0.02 0.75 16 11 N -0.61 -6.53 2.97 -166.54 -0.49 -7.02 16 12 C 0.51 7.29 7.54 -10.98 -0.08 7.20 16 13 O -0.51 -9.01 11.56 -17.00 -0.20 -9.21 16 14 C -0.13 -1.79 4.06 -27.88 -0.11 -1.90 16 15 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 17 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 22 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.11 7.76 -51.93 -0.40 0.70 16 31 H 0.08 0.87 7.73 -51.92 -0.40 0.47 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.63 5.93 -51.93 -0.31 0.33 16 39 H 0.09 1.03 7.71 -51.93 -0.40 0.63 16 40 H 0.09 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -35.20 371.10 -9.90 -45.10 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.64 Total: -3.92 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.63 Total: -12.65 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.24 Total: -34.02 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.45 Total: -17.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.20 -9.90 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000644049861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.770 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds