Wall clock time and date at job start Tue Mar 31 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47416 * 2 1 4 4 O 1.20762 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00479 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.58327 * 16.23190 * 5 3 2 7 7 C 1.53192 * 109.58749 * 136.51063 * 5 3 2 8 8 C 1.53041 * 109.30984 * 174.42174 * 7 5 3 9 9 C 1.53038 * 109.53884 * 298.63688 * 8 7 5 10 10 C 1.53189 * 109.31012 * 61.36835 * 9 8 7 11 11 N 1.46920 * 109.58767 * 255.80544 * 5 3 2 12 12 C 1.34781 * 120.63006 * 6.62470 * 11 5 3 13 13 O 1.21282 * 119.99853 * 5.65535 * 12 11 5 14 14 C 1.50699 * 119.99596 * 185.65931 * 12 11 5 15 15 C 1.53004 * 109.46793 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47351 * 179.97438 * 15 14 12 17 17 C 1.52991 * 109.47465 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47527 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99936 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00643 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99352 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47343 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47392 * 120.00267 * 22 20 18 25 25 H 1.48503 * 109.47393 * 240.00418 * 22 20 18 26 26 H 1.08991 * 109.47281 * 59.99882 * 1 2 3 27 27 H 1.09005 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46915 * 299.99669 * 1 2 3 29 29 H 1.09002 * 109.46683 * 239.99594 * 2 1 3 30 30 H 1.09005 * 109.47324 * 119.99906 * 2 1 3 31 31 H 1.09008 * 109.49671 * 54.47592 * 7 5 3 32 32 H 1.08992 * 109.52870 * 294.39937 * 7 5 3 33 33 H 1.09005 * 109.45442 * 178.61969 * 8 7 5 34 34 H 1.08999 * 109.45821 * 58.66438 * 8 7 5 35 35 H 1.09007 * 109.49608 * 181.31717 * 9 8 7 36 36 H 1.09001 * 109.50009 * 301.41306 * 9 8 7 37 37 H 1.09005 * 109.58844 * 65.15038 * 10 9 8 38 38 H 1.09004 * 109.58456 * 185.57184 * 10 9 8 39 39 H 1.08994 * 109.47384 * 299.99799 * 14 12 11 40 40 H 1.08997 * 109.47547 * 60.00208 * 14 12 11 41 41 H 1.08994 * 109.47321 * 300.00242 * 15 14 12 42 42 H 1.09000 * 109.47020 * 60.00264 * 15 14 12 43 43 H 1.09003 * 109.47163 * 300.01120 * 16 15 14 44 44 H 1.09000 * 109.46534 * 60.00345 * 16 15 14 45 45 H 1.09004 * 109.47218 * 300.00758 * 17 16 15 46 46 H 1.09000 * 109.47322 * 60.00043 * 17 16 15 47 47 H 0.97004 * 119.99874 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2476 2.3386 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0533 0.7936 -0.2880 7 6 3.8272 2.8196 -0.9938 8 6 5.3085 3.1895 -0.8890 9 6 5.6111 3.6951 0.5234 10 6 5.3182 2.5815 1.5337 11 7 3.9368 2.1197 1.3412 12 6 3.0739 2.0848 2.3760 13 8 1.9694 1.6060 2.2286 14 6 3.4816 2.6408 3.7160 15 6 2.3277 2.4792 4.7077 16 6 2.7417 3.0431 6.0684 17 6 1.5881 2.8809 7.0601 18 6 1.9957 3.4368 8.4001 19 1 2.9791 3.8636 8.5313 20 6 1.1128 3.4017 9.4587 21 7 -0.0848 2.8824 9.2989 22 14 1.6178 4.0915 11.1194 23 1 3.0052 4.6146 11.0371 24 1 0.6961 5.1921 11.4994 25 1 1.5536 3.0167 12.1422 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2169 3.6922 -0.7604 32 1 3.6071 2.4824 -2.0066 33 1 5.5394 3.9718 -1.6121 34 1 5.9179 2.3104 -1.0985 35 1 6.6611 3.9803 0.5905 36 1 4.9841 4.5594 0.7425 37 1 6.0066 1.7518 1.3728 38 1 5.4371 2.9665 2.5465 39 1 4.3547 2.1012 4.0829 40 1 3.7252 3.6981 3.6119 41 1 1.4549 3.0190 4.3406 42 1 2.0837 1.4220 4.8120 43 1 3.6145 2.5029 6.4352 44 1 2.9860 4.1002 5.9644 45 1 0.7151 3.4208 6.6934 46 1 1.3442 1.8236 7.1640 47 1 -0.7059 2.8573 10.0436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000644049861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:18 Heat of formation + Delta-G solvation = -123.993511 kcal Electronic energy + Delta-G solvation = -24518.265824 eV Core-core repulsion = 21085.110144 eV Total energy + Delta-G solvation = -3433.155680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03772 -39.73047 -38.43728 -36.67085 -34.70645 -33.95687 -33.76299 -32.55448 -31.28664 -27.98158 -27.00121 -25.62955 -24.46489 -23.63216 -22.04984 -21.51942 -20.72265 -19.76731 -18.44998 -18.05642 -17.33071 -17.11647 -16.76989 -16.51733 -15.95115 -15.88011 -15.62628 -15.02894 -14.91783 -14.75613 -14.48535 -14.22942 -14.09952 -13.83321 -13.57897 -13.50309 -13.24767 -13.03790 -12.85594 -12.69958 -12.40999 -12.32304 -12.20356 -12.19443 -12.11410 -12.00542 -11.73704 -11.64522 -11.41693 -11.33662 -11.11848 -10.72324 -10.57196 -10.33459 -9.72919 -8.19817 -6.32299 1.05441 1.39737 1.41005 1.52042 1.54483 2.05098 2.41192 2.92356 3.12987 3.58114 3.78912 3.86024 3.97392 4.02205 4.08025 4.08907 4.12794 4.23197 4.27554 4.37893 4.47285 4.59338 4.63581 4.69130 4.76561 4.79661 4.82284 4.84510 4.87874 4.94784 5.04845 5.08903 5.14328 5.14430 5.22143 5.26889 5.30318 5.33936 5.44609 5.48627 5.54860 5.75360 5.86167 6.23140 6.24676 6.75313 6.86370 7.06277 7.37540 8.92795 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.003087 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.058828 B = 9068.796156 C =10199.199632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.371 3.629 4 O -0.502 6.502 5 C 0.092 3.908 6 H 0.126 0.874 7 C -0.123 4.123 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.098 3.902 11 N -0.600 5.600 12 C 0.502 3.498 13 O -0.557 6.557 14 C -0.121 4.121 15 C -0.093 4.093 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.256 1.256 24 H -0.280 1.280 25 H -0.278 1.278 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.058 0.942 45 H -0.020 1.020 46 H -0.015 1.015 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.711 -3.953 -24.687 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.250 3.750 4 O -0.379 6.379 5 C -0.012 4.012 6 H 0.144 0.856 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.175 4.175 10 C -0.023 4.023 11 N -0.336 5.336 12 C 0.293 3.707 13 O -0.437 6.437 14 C -0.161 4.161 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.179 1.179 24 H -0.206 1.206 25 H -0.204 1.204 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.076 0.924 45 H -0.002 1.002 46 H 0.004 0.996 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.588 -3.754 -24.690 29.981 hybrid contribution -0.860 0.316 1.080 1.417 sum 15.728 -3.438 -23.609 28.576 Atomic orbital electron populations 1.21480 0.95116 1.01886 1.00913 1.21969 0.97485 0.95115 1.04985 1.24621 0.90556 0.91726 0.68122 1.90352 1.59728 1.48971 1.38835 1.21994 0.94409 1.00586 0.84193 0.85616 1.21856 0.98860 0.96989 0.98469 1.21509 0.93662 1.02646 0.97134 1.21968 1.03371 0.97445 0.94733 1.22199 0.79790 0.98568 1.01700 1.48339 1.13528 1.65308 1.06384 1.21430 0.84042 0.77864 0.87380 1.90653 1.23343 1.47531 1.82204 1.21656 1.00664 1.03803 0.89943 1.21231 0.97029 1.00406 0.94503 1.21434 0.98408 1.00225 0.93084 1.19048 0.94002 0.94545 0.94212 1.21779 1.00565 1.39175 0.96328 0.91438 1.26121 0.94849 0.95750 1.03801 1.70148 1.07800 1.46864 1.33116 0.85309 0.78919 0.77966 0.78296 1.17928 1.20595 1.20355 0.92943 0.90459 0.95615 0.85760 0.89014 0.93783 0.89281 0.90411 0.89275 0.87717 0.93182 0.88060 0.88017 0.85647 0.87113 0.94804 0.93485 0.91570 0.92352 1.00177 0.99615 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.20 71.98 0.66 -2.82 16 2 C -0.16 -3.43 5.82 29.85 0.17 -3.26 16 3 C 0.37 9.79 3.52 29.10 0.10 9.89 16 4 O -0.50 -18.18 15.04 20.11 0.30 -17.87 16 5 C 0.09 1.65 3.26 44.23 0.14 1.79 16 6 H 0.13 1.37 8.05 -2.39 -0.02 1.35 16 7 C -0.12 -1.88 5.21 30.67 0.16 -1.72 16 8 C -0.11 -0.97 5.88 30.62 0.18 -0.79 16 9 C -0.14 -1.27 6.08 30.67 0.19 -1.08 16 10 C 0.10 1.04 6.35 86.36 0.55 1.59 16 11 N -0.60 -11.70 2.97 -799.20 -2.38 -14.08 16 12 C 0.50 14.15 7.54 87.66 0.66 14.81 16 13 O -0.56 -20.68 11.56 18.53 0.21 -20.46 16 14 C -0.12 -3.12 4.06 29.85 0.12 -3.00 16 15 C -0.09 -3.50 4.50 30.60 0.14 -3.36 16 16 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 17 C 0.02 1.07 4.97 29.84 0.15 1.22 16 18 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 19 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 20 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 21 N -0.94 -59.93 13.29 21.45 0.28 -59.65 16 22 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.02 0.84 8.10 -2.38 -0.02 0.82 16 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.10 7.76 -2.38 -0.02 2.08 16 31 H 0.04 0.98 7.73 -2.38 -0.02 0.97 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.57 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.10 0.95 5.93 -2.39 -0.01 0.94 16 39 H 0.13 2.39 7.71 -2.39 -0.02 2.37 16 40 H 0.11 2.45 7.92 -2.39 -0.02 2.43 16 41 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 42 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 46 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 47 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -83.07 371.10 5.44 -77.63 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.91 Total: 9.20 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.08 Total: -22.02 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.09 Total: -73.72 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: 0.52 Total: -38.33 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -83.07 5.44 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000644049861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.363 kcal (2) G-P(sol) polarization free energy of solvation -83.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds