Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47165 * 2 1 4 4 O 1.20755 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00148 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.70298 * 343.35439 * 5 3 2 7 7 C 1.53191 * 109.58791 * 223.00145 * 5 3 2 8 8 C 1.53043 * 109.31249 * 185.57957 * 7 5 3 9 9 C 1.53042 * 109.53841 * 61.36136 * 8 7 5 10 10 C 1.53189 * 109.31538 * 298.63579 * 9 8 7 11 11 N 1.46923 * 109.58482 * 103.70867 * 5 3 2 12 12 C 1.34771 * 120.63447 * 353.67272 * 11 5 3 13 13 O 1.21285 * 119.99768 * 354.10709 * 12 11 5 14 14 C 1.50698 * 120.00501 * 174.10761 * 12 11 5 15 15 C 1.53003 * 109.47319 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47144 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47144 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46953 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00272 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46920 * 90.00135 * 22 20 18 24 24 H 1.48499 * 109.47156 * 210.00236 * 22 20 18 25 25 H 1.48499 * 109.47226 * 330.00556 * 22 20 18 26 26 H 1.08998 * 109.47121 * 299.99532 * 1 2 3 27 27 H 1.09000 * 109.47270 * 59.99822 * 1 2 3 28 28 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47212 * 239.99953 * 2 1 3 30 30 H 1.09000 * 109.47270 * 120.00178 * 2 1 3 31 31 H 1.08999 * 109.50208 * 65.62458 * 7 5 3 32 32 H 1.09000 * 109.52511 * 305.54166 * 7 5 3 33 33 H 1.08999 * 109.45919 * 301.34013 * 8 7 5 34 34 H 1.09003 * 109.44831 * 181.37848 * 8 7 5 35 35 H 1.09003 * 109.49580 * 178.68602 * 9 8 7 36 36 H 1.08997 * 109.49469 * 58.58983 * 9 8 7 37 37 H 1.09001 * 109.58324 * 294.85167 * 10 9 8 38 38 H 1.08992 * 109.58887 * 174.42568 * 10 9 8 39 39 H 1.08995 * 109.47265 * 300.00430 * 14 12 11 40 40 H 1.09006 * 109.46770 * 60.00123 * 14 12 11 41 41 H 1.09003 * 109.47053 * 300.00390 * 15 14 12 42 42 H 1.09000 * 109.47019 * 59.99913 * 15 14 12 43 43 H 1.09005 * 109.46754 * 300.00002 * 16 15 14 44 44 H 1.09000 * 109.47432 * 59.99922 * 16 15 14 45 45 H 1.08998 * 109.46695 * 299.99860 * 17 16 15 46 46 H 1.09000 * 109.46701 * 60.00382 * 17 16 15 47 47 H 0.97000 * 120.00513 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 1 4.0548 0.7967 0.2949 7 6 3.8255 2.8280 0.9849 8 6 5.3071 3.1970 0.8793 9 6 5.6119 3.6908 -0.5369 10 6 5.3205 2.5688 -1.5384 11 7 3.9387 2.1085 -1.3441 12 6 3.0758 2.0707 -2.3787 13 8 1.9705 1.5943 -2.2293 14 6 3.4842 2.6203 -3.7211 15 6 2.3304 2.4552 -4.7123 16 6 2.7453 3.0126 -6.0753 17 6 1.5917 2.8469 -7.0667 18 6 2.0002 3.3966 -8.4091 19 1 2.9843 3.8212 -8.5420 20 6 1.1179 3.3564 -9.4679 21 7 -0.0802 2.8389 -9.3062 22 14 1.6239 4.0384 -11.1317 23 1 2.2531 2.9613 -11.9375 24 1 0.4249 4.5516 -11.8417 25 1 2.5960 5.1442 -10.9386 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6041 2.4986 2.0000 32 1 3.2158 3.6987 0.7438 33 1 5.9162 2.3197 1.0969 34 1 5.5367 3.9854 1.5961 35 1 6.6619 3.9754 -0.6047 36 1 4.9852 4.5531 -0.7641 37 1 6.0087 1.7405 -1.3695 38 1 5.4409 2.9453 -2.5541 39 1 3.7296 3.6776 -3.6214 40 1 4.3565 2.0777 -4.0857 41 1 2.0854 1.3977 -4.8118 42 1 1.4579 2.9975 -4.3478 43 1 2.9905 4.0701 -5.9760 44 1 3.6176 2.4700 -6.4396 45 1 1.3470 1.7894 -7.1658 46 1 0.7191 3.3894 -6.7027 47 1 -0.7008 2.8103 -10.0511 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000644049862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = -103.824851 kcal Electronic energy + Delta-G solvation = -24519.248713 eV Core-core repulsion = 21086.967612 eV Total energy + Delta-G solvation = -3432.281101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10415 -38.64306 -37.61274 -34.94298 -33.26809 -32.85929 -32.54736 -31.73041 -29.64866 -26.79584 -25.52760 -24.81840 -23.25273 -22.40716 -20.89350 -20.10878 -19.77925 -18.81582 -17.10564 -16.45639 -16.17616 -16.10590 -15.66606 -15.07235 -14.97007 -14.60548 -14.42876 -14.18630 -14.02597 -13.76387 -13.33813 -13.24162 -12.71143 -12.56717 -12.21729 -12.16268 -11.86764 -11.69024 -11.65005 -11.59310 -11.46494 -11.22633 -11.08781 -11.05474 -10.97407 -10.54200 -10.49449 -10.39537 -9.76784 -9.60747 -9.38447 -9.21520 -8.97720 -8.91081 -8.29340 -5.93915 -3.96577 1.99773 2.56000 2.92508 3.34741 3.40783 3.43990 3.77931 4.33214 4.41927 4.49746 4.55682 4.64682 4.72524 4.86154 5.00296 5.06281 5.14443 5.16870 5.24496 5.28068 5.30704 5.37661 5.41402 5.44014 5.51688 5.61315 5.70218 5.73004 5.82224 5.87006 5.96082 6.03381 6.12761 6.18517 6.29651 6.33229 6.54587 6.83913 7.00577 7.13702 7.22097 7.70686 7.75274 7.91307 8.06162 8.07834 8.48982 9.11114 9.67024 11.17408 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003088 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.546581 B = 9064.949948 C =10194.532132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.378 3.622 4 O -0.451 6.451 5 C 0.095 3.905 6 H 0.089 0.911 7 C -0.127 4.127 8 C -0.117 4.117 9 C -0.139 4.139 10 C 0.107 3.893 11 N -0.608 5.608 12 C 0.512 3.488 13 O -0.510 6.510 14 C -0.133 4.133 15 C -0.103 4.103 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.545 -3.696 24.049 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.253 3.747 4 O -0.324 6.324 5 C -0.009 4.009 6 H 0.107 0.893 7 C -0.165 4.165 8 C -0.155 4.155 9 C -0.177 4.177 10 C -0.015 4.015 11 N -0.345 5.345 12 C 0.302 3.698 13 O -0.386 6.386 14 C -0.172 4.172 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.346 -3.497 24.021 27.234 hybrid contribution 0.490 0.287 -0.948 1.105 sum 12.836 -3.211 23.073 26.597 Atomic orbital electron populations 1.21513 0.93708 1.01233 1.03089 1.21893 0.98598 0.95671 1.03321 1.23916 0.89028 0.91551 0.70225 1.90369 1.58046 1.47477 1.36478 1.21809 0.96370 0.98542 0.84197 0.89288 1.21862 0.97433 0.98816 0.98361 1.21498 0.95573 1.01414 0.96985 1.21956 1.02241 0.98552 0.94949 1.21824 0.81703 0.97154 1.00864 1.48300 1.12570 1.66796 1.06850 1.21327 0.84209 0.77829 0.86398 1.90653 1.21304 1.45288 1.81367 1.21796 1.02028 1.02121 0.91279 1.21475 0.95974 1.02296 0.94402 1.21644 1.00514 0.99069 0.93487 1.19090 0.92799 0.97164 0.92638 1.21279 0.99886 1.39386 0.95322 0.92765 1.25041 0.95005 0.95555 0.98966 1.69973 1.06318 1.45555 1.31591 0.86613 0.77992 0.79247 0.84246 1.20712 1.21253 1.19914 0.92811 0.91423 0.92629 0.88629 0.89989 0.90690 0.90294 0.91611 0.91262 0.90348 0.91099 0.90969 0.88768 0.88961 0.89014 0.91769 0.91725 0.93490 0.93487 0.96611 0.96588 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 37.16 0.34 -1.34 16 2 C -0.16 -1.74 5.82 -27.88 -0.16 -1.91 16 3 C 0.38 4.94 3.52 -29.04 -0.10 4.84 16 4 O -0.45 -7.65 15.05 -16.50 -0.25 -7.90 16 5 C 0.09 0.95 3.26 -68.75 -0.22 0.72 16 6 H 0.09 0.67 8.06 -51.92 -0.42 0.25 16 7 C -0.13 -1.07 5.21 -26.61 -0.14 -1.21 16 8 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 9 C -0.14 -0.88 6.08 -26.61 -0.16 -1.04 16 10 C 0.11 0.77 6.35 -3.71 -0.02 0.75 16 11 N -0.61 -6.52 2.97 -166.53 -0.49 -7.02 16 12 C 0.51 7.28 7.55 -10.99 -0.08 7.20 16 13 O -0.51 -9.00 11.54 -16.95 -0.20 -9.20 16 14 C -0.13 -1.79 4.06 -27.88 -0.11 -1.90 16 15 C -0.10 -1.87 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 22 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 1.11 7.74 -51.93 -0.40 0.71 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.63 5.92 -51.93 -0.31 0.32 16 39 H 0.09 1.12 7.92 -51.93 -0.41 0.71 16 40 H 0.09 1.03 7.71 -51.93 -0.40 0.63 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -35.17 371.07 -9.90 -45.07 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -8.64 Total: -3.87 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.63 Total: -12.67 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.24 Total: -34.03 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.44 Total: -17.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.17 -9.90 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000644049862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.759 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds