Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47165 * 2 1 4 4 O 1.20755 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00148 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.70298 * 343.35439 * 5 3 2 7 7 C 1.53191 * 109.58791 * 223.00145 * 5 3 2 8 8 C 1.53043 * 109.31249 * 185.57957 * 7 5 3 9 9 C 1.53042 * 109.53841 * 61.36136 * 8 7 5 10 10 C 1.53189 * 109.31538 * 298.63579 * 9 8 7 11 11 N 1.46923 * 109.58482 * 103.70867 * 5 3 2 12 12 C 1.34771 * 120.63447 * 353.67272 * 11 5 3 13 13 O 1.21285 * 119.99768 * 354.10709 * 12 11 5 14 14 C 1.50698 * 120.00501 * 174.10761 * 12 11 5 15 15 C 1.53003 * 109.47319 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47144 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47144 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46953 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00272 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46920 * 90.00135 * 22 20 18 24 24 H 1.48499 * 109.47156 * 210.00236 * 22 20 18 25 25 H 1.48499 * 109.47226 * 330.00556 * 22 20 18 26 26 H 1.08998 * 109.47121 * 299.99532 * 1 2 3 27 27 H 1.09000 * 109.47270 * 59.99822 * 1 2 3 28 28 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47212 * 239.99953 * 2 1 3 30 30 H 1.09000 * 109.47270 * 120.00178 * 2 1 3 31 31 H 1.08999 * 109.50208 * 65.62458 * 7 5 3 32 32 H 1.09000 * 109.52511 * 305.54166 * 7 5 3 33 33 H 1.08999 * 109.45919 * 301.34013 * 8 7 5 34 34 H 1.09003 * 109.44831 * 181.37848 * 8 7 5 35 35 H 1.09003 * 109.49580 * 178.68602 * 9 8 7 36 36 H 1.08997 * 109.49469 * 58.58983 * 9 8 7 37 37 H 1.09001 * 109.58324 * 294.85167 * 10 9 8 38 38 H 1.08992 * 109.58887 * 174.42568 * 10 9 8 39 39 H 1.08995 * 109.47265 * 300.00430 * 14 12 11 40 40 H 1.09006 * 109.46770 * 60.00123 * 14 12 11 41 41 H 1.09003 * 109.47053 * 300.00390 * 15 14 12 42 42 H 1.09000 * 109.47019 * 59.99913 * 15 14 12 43 43 H 1.09005 * 109.46754 * 300.00002 * 16 15 14 44 44 H 1.09000 * 109.47432 * 59.99922 * 16 15 14 45 45 H 1.08998 * 109.46695 * 299.99860 * 17 16 15 46 46 H 1.09000 * 109.46701 * 60.00382 * 17 16 15 47 47 H 0.97000 * 120.00513 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 1 4.0548 0.7967 0.2949 7 6 3.8255 2.8280 0.9849 8 6 5.3071 3.1970 0.8793 9 6 5.6119 3.6908 -0.5369 10 6 5.3205 2.5688 -1.5384 11 7 3.9387 2.1085 -1.3441 12 6 3.0758 2.0707 -2.3787 13 8 1.9705 1.5943 -2.2293 14 6 3.4842 2.6203 -3.7211 15 6 2.3304 2.4552 -4.7123 16 6 2.7453 3.0126 -6.0753 17 6 1.5917 2.8469 -7.0667 18 6 2.0002 3.3966 -8.4091 19 1 2.9843 3.8212 -8.5420 20 6 1.1179 3.3564 -9.4679 21 7 -0.0802 2.8389 -9.3062 22 14 1.6239 4.0384 -11.1317 23 1 2.2531 2.9613 -11.9375 24 1 0.4249 4.5516 -11.8417 25 1 2.5960 5.1442 -10.9386 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6041 2.4986 2.0000 32 1 3.2158 3.6987 0.7438 33 1 5.9162 2.3197 1.0969 34 1 5.5367 3.9854 1.5961 35 1 6.6619 3.9754 -0.6047 36 1 4.9852 4.5531 -0.7641 37 1 6.0087 1.7405 -1.3695 38 1 5.4409 2.9453 -2.5541 39 1 3.7296 3.6776 -3.6214 40 1 4.3565 2.0777 -4.0857 41 1 2.0854 1.3977 -4.8118 42 1 1.4579 2.9975 -4.3478 43 1 2.9905 4.0701 -5.9760 44 1 3.6176 2.4700 -6.4396 45 1 1.3470 1.7894 -7.1658 46 1 0.7191 3.3894 -6.7027 47 1 -0.7008 2.8103 -10.0511 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000644049862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = -123.919122 kcal Electronic energy + Delta-G solvation = -24520.120066 eV Core-core repulsion = 21086.967612 eV Total energy + Delta-G solvation = -3433.152454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03935 -39.73281 -38.43758 -36.67016 -34.70597 -33.95682 -33.76192 -32.55490 -31.28542 -27.98143 -26.99934 -25.63136 -24.46300 -23.63235 -22.05101 -21.52000 -20.72356 -19.76648 -18.44647 -18.05669 -17.33011 -17.11646 -16.76999 -16.51993 -15.95088 -15.88236 -15.62798 -15.02945 -14.91884 -14.75467 -14.47810 -14.22704 -14.09709 -13.83427 -13.58484 -13.50528 -13.24543 -13.03711 -12.82721 -12.69882 -12.41019 -12.35183 -12.20635 -12.19279 -12.11604 -12.00377 -11.73735 -11.64506 -11.41469 -11.33760 -11.13004 -10.72436 -10.56300 -10.33554 -9.72936 -8.19569 -6.32240 1.05194 1.39648 1.42331 1.52043 1.53399 2.05228 2.41292 2.92394 3.13094 3.58018 3.78859 3.85929 3.97391 4.02248 4.07941 4.08897 4.12868 4.23210 4.27592 4.37935 4.47220 4.59360 4.63563 4.69138 4.76543 4.79629 4.82275 4.84521 4.87841 4.94834 5.04860 5.09027 5.14331 5.14441 5.22128 5.26904 5.30303 5.33877 5.44564 5.48528 5.54679 5.75416 5.86124 6.23116 6.24639 6.75220 6.86230 7.06136 7.37613 8.92816 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003088 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.546581 B = 9064.949948 C =10194.532132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.372 3.628 4 O -0.502 6.502 5 C 0.092 3.908 6 H 0.127 0.873 7 C -0.124 4.124 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.098 3.902 11 N -0.600 5.600 12 C 0.502 3.498 13 O -0.557 6.557 14 C -0.122 4.122 15 C -0.093 4.093 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.542 4.542 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.259 1.259 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.046 0.954 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.066 0.934 45 H -0.015 1.015 46 H -0.020 1.020 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.695 -3.841 24.675 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C 0.250 3.750 4 O -0.379 6.379 5 C -0.012 4.012 6 H 0.144 0.856 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.175 4.175 10 C -0.023 4.023 11 N -0.336 5.336 12 C 0.293 3.707 13 O -0.437 6.437 14 C -0.161 4.161 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.086 0.914 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.182 1.182 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.004 0.996 46 H -0.002 1.002 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.567 -3.641 24.679 29.946 hybrid contribution -0.843 0.308 -1.081 1.405 sum 15.724 -3.333 23.598 28.552 Atomic orbital electron populations 1.21479 0.95118 1.01882 1.00912 1.21968 0.97484 0.95119 1.04971 1.24613 0.90547 0.91723 0.68111 1.90350 1.59721 1.48968 1.38855 1.22001 0.94397 1.00641 0.84139 0.85589 1.21857 0.98862 0.96917 0.98556 1.21510 0.93657 1.02681 0.97103 1.21969 1.03374 0.97423 0.94764 1.22201 0.79782 0.98530 1.01743 1.48347 1.13466 1.65522 1.06223 1.21430 0.84052 0.77802 0.87437 1.90654 1.23299 1.47528 1.82247 1.21658 1.00663 1.03847 0.89902 1.21231 0.97030 1.00416 0.94492 1.21436 0.98409 1.00241 0.93068 1.19046 0.94005 0.94523 0.94203 1.21752 1.00546 1.39467 0.96206 0.91434 1.26118 0.94829 0.95710 1.03819 1.70138 1.07777 1.46876 1.33136 0.85362 0.77862 0.78968 0.78331 1.19514 1.21035 1.18247 0.92941 0.95612 0.90470 0.89024 0.85778 0.89301 0.93784 0.89271 0.90419 0.87715 0.93188 0.88040 0.88011 0.87108 0.85651 0.93480 0.94805 0.92359 0.91565 0.99628 1.00175 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.20 71.98 0.66 -2.82 16 2 C -0.16 -3.44 5.82 29.85 0.17 -3.26 16 3 C 0.37 9.80 3.52 29.10 0.10 9.90 16 4 O -0.50 -18.17 15.05 20.08 0.30 -17.87 16 5 C 0.09 1.65 3.26 44.23 0.14 1.79 16 6 H 0.13 1.37 8.06 -2.38 -0.02 1.35 16 7 C -0.12 -1.89 5.21 30.67 0.16 -1.73 16 8 C -0.11 -0.98 5.88 30.62 0.18 -0.80 16 9 C -0.14 -1.27 6.08 30.67 0.19 -1.08 16 10 C 0.10 1.04 6.35 86.36 0.55 1.59 16 11 N -0.60 -11.69 2.97 -799.19 -2.38 -14.06 16 12 C 0.50 14.13 7.55 87.66 0.66 14.79 16 13 O -0.56 -20.65 11.54 18.47 0.21 -20.44 16 14 C -0.12 -3.12 4.06 29.85 0.12 -3.00 16 15 C -0.09 -3.50 4.50 30.59 0.14 -3.36 16 16 C -0.09 -3.91 5.15 30.59 0.16 -3.76 16 17 C 0.02 1.09 4.97 29.85 0.15 1.23 16 18 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 19 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 20 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 21 N -0.94 -59.96 13.29 21.45 0.28 -59.68 16 22 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 2.11 7.74 -2.39 -0.02 2.09 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.99 7.73 -2.39 -0.02 0.97 16 33 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 0.95 5.92 -2.39 -0.01 0.94 16 39 H 0.11 2.45 7.92 -2.39 -0.02 2.43 16 40 H 0.13 2.39 7.71 -2.38 -0.02 2.37 16 41 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H -0.02 -1.26 8.14 -2.39 -0.02 -1.27 16 47 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -83.02 371.07 5.44 -77.58 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.91 Total: 9.33 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.08 Total: -22.07 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.09 Total: -73.74 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: 0.52 Total: -38.31 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -83.02 5.44 -77.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000644049862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.340 kcal (2) G-P(sol) polarization free energy of solvation -83.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds