Wall clock time and date at job start Tue Mar 31 2020 08:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99940 * 2 1 4 4 C 1.52999 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47276 * 64.99924 * 4 3 2 6 6 C 1.46499 * 120.00136 * 269.99459 * 5 4 3 7 7 C 1.50697 * 109.47293 * 270.00491 * 6 5 4 8 8 H 1.07997 * 120.00010 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00091 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00149 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00247 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47226 * 89.99205 * 11 9 7 13 13 H 1.48494 * 109.47051 * 209.99874 * 11 9 7 14 14 H 1.48508 * 109.46947 * 329.99558 * 11 9 7 15 15 C 1.34784 * 119.99971 * 89.99654 * 5 4 3 16 16 O 1.21610 * 119.99781 * 179.97438 * 15 5 4 17 17 C 1.47102 * 119.99985 * 359.72523 * 15 5 4 18 18 C 1.32994 * 119.99739 * 180.02562 * 17 15 5 19 19 C 1.50697 * 119.99528 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46865 * 239.99510 * 19 18 17 21 21 C 1.53003 * 109.47147 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46915 * 60.00322 * 21 20 19 23 23 C 1.53000 * 109.47253 * 299.99840 * 22 21 20 24 24 C 1.52994 * 109.47120 * 60.00061 * 23 22 21 25 25 H 1.09005 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47677 * 300.00251 * 1 2 3 27 27 H 1.09000 * 109.46962 * 60.00702 * 1 2 3 28 28 H 1.08996 * 109.47579 * 59.99695 * 3 2 1 29 29 H 1.08999 * 109.46914 * 299.99780 * 3 2 1 30 30 H 1.08998 * 109.47074 * 304.99499 * 4 3 2 31 31 H 1.09008 * 109.46412 * 184.99505 * 4 3 2 32 32 H 1.08997 * 109.46865 * 30.00228 * 6 5 4 33 33 H 1.08998 * 109.47058 * 149.99741 * 6 5 4 34 34 H 0.96995 * 120.00744 * 180.02562 * 10 9 7 35 35 H 1.08004 * 119.99913 * 359.97438 * 17 15 5 36 36 H 1.07998 * 119.99892 * 359.97438 * 18 17 15 37 37 H 1.09001 * 109.47434 * 359.97438 * 19 18 17 38 38 H 1.09001 * 109.47378 * 300.00386 * 20 19 18 39 39 H 1.09004 * 109.46828 * 60.00326 * 20 19 18 40 40 H 1.09001 * 109.47245 * 299.99849 * 21 20 19 41 41 H 1.09002 * 109.46620 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46851 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47094 * 59.99989 * 22 21 20 44 44 H 1.09001 * 109.47192 * 300.00089 * 23 22 21 45 45 H 1.09004 * 109.47131 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47504 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47066 * 59.99950 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.1063 -0.8927 -1.3402 7 6 5.5017 -1.2982 -0.9410 8 1 6.2202 -0.5463 -0.6502 9 6 5.8613 -2.6292 -0.9480 10 7 4.9865 -3.5450 -1.3026 11 14 7.5912 -3.1320 -0.4539 12 1 7.6346 -3.3841 1.0089 13 1 7.9740 -4.3688 -1.1811 14 1 8.5403 -2.0424 -0.7967 15 6 4.2633 1.3328 -2.3200 16 8 4.6301 0.8175 -3.3588 17 6 4.1274 2.7949 -2.2322 18 6 4.4098 3.5535 -3.2874 19 6 4.2711 5.0514 -3.1971 20 6 3.2526 5.5325 -4.2326 21 6 3.1121 7.0533 -4.1414 22 6 4.4673 7.7080 -4.4167 23 6 5.4858 7.2269 -3.3813 24 6 5.6262 5.7062 -3.4724 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1765 0.0901 32 1 3.3858 -1.3633 -0.6713 33 1 3.9139 -1.2124 -2.3643 34 1 5.2393 -4.4814 -1.3071 35 1 3.7975 3.2521 -1.3110 36 1 4.7393 3.0962 -4.2086 37 1 3.9306 5.3253 -2.1985 38 1 3.5926 5.2586 -5.2313 39 1 2.2872 5.0657 -4.0367 40 1 2.7722 7.3277 -3.1428 41 1 2.3862 7.3959 -4.8788 42 1 4.3673 8.7914 -4.3514 43 1 4.8071 7.4337 -5.4154 44 1 5.1460 7.5012 -2.3827 45 1 6.4512 7.6937 -3.5772 46 1 6.3515 5.3633 -2.7345 47 1 5.9661 5.4318 -4.4711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749306155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:28 Heat of formation + Delta-G solvation = -90.404297 kcal Electronic energy + Delta-G solvation = -24230.747485 eV Core-core repulsion = 20799.048343 eV Total energy + Delta-G solvation = -3431.699142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.27763 -38.62201 -37.43145 -34.79923 -33.76760 -32.56021 -30.91849 -29.86397 -29.40442 -27.06999 -25.90210 -24.01835 -22.71558 -22.65653 -22.28413 -20.15371 -19.89084 -18.03818 -16.92025 -16.35284 -16.08784 -15.69972 -15.30455 -15.09400 -14.67752 -14.43398 -14.35640 -14.26759 -13.81725 -13.70064 -13.06759 -12.81425 -12.40683 -12.36327 -12.33311 -12.08599 -11.78088 -11.62430 -11.58968 -11.31553 -11.17763 -11.11701 -10.83653 -10.80976 -10.63000 -10.41158 -10.36366 -10.30628 -10.06363 -9.51994 -9.40049 -9.04954 -8.84525 -8.30877 -7.52401 -5.91899 -3.95931 1.81928 3.36808 3.42836 3.47549 3.96367 4.05901 4.15727 4.48377 4.54513 4.57946 4.62372 4.95358 5.06688 5.10003 5.23512 5.32584 5.33224 5.34876 5.36184 5.41337 5.42102 5.48368 5.52511 5.55860 5.59964 5.68116 5.69312 5.80214 5.83149 5.88780 5.89235 5.97165 5.98633 6.04984 6.16811 6.25465 6.29860 6.64175 6.70950 7.37044 7.44956 7.64217 7.70314 8.06250 8.38400 8.57519 9.02780 9.21821 9.67802 11.16053 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.003829 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.137101 B = 7311.087529 C = 8754.676567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.249 3.751 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.531 3.469 16 O -0.546 6.546 17 C -0.203 4.203 18 C -0.082 4.082 19 C -0.060 4.060 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 21.584 -0.005 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.314 5.314 6 C 0.130 3.870 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.319 3.681 16 O -0.426 6.426 17 C -0.224 4.224 18 C -0.101 4.101 19 C -0.079 4.079 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.456 20.891 -0.556 21.873 hybrid contribution 0.654 -0.157 0.455 0.812 sum -5.802 20.734 -0.101 21.531 Atomic orbital electron populations 1.22696 0.82105 1.02573 0.99069 1.88106 1.18680 1.26980 1.95131 1.23129 0.95374 0.85413 0.99491 1.21530 0.91134 0.99066 0.89562 1.48079 1.63668 1.09884 1.09796 1.19299 0.96665 0.72177 0.98830 1.21485 0.97518 0.92206 1.45110 0.92664 1.24919 0.97340 0.96429 0.95447 1.69948 1.34320 1.00903 1.48157 0.86536 0.84771 0.78026 0.78294 1.20726 1.21177 1.19989 1.18444 0.78675 0.86826 0.84112 1.90741 1.47319 1.75001 1.29504 1.22967 1.05464 0.94363 0.99618 1.23595 0.93582 0.94189 0.98768 1.20384 0.96025 0.91542 0.99946 1.21549 0.98873 0.95259 0.99267 1.21532 0.97074 0.95336 1.01665 1.21553 0.95351 0.99536 0.99388 1.21533 0.99015 0.95729 0.99343 1.21548 0.96350 0.94653 1.02452 0.89785 0.94720 0.94623 0.93197 0.93612 0.89076 0.89946 0.93662 0.94325 0.92893 0.86368 0.85800 0.90667 0.91572 0.91739 0.92043 0.92054 0.92288 0.91963 0.92030 0.92013 0.91592 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.59 9.53 -35.23 -0.34 -6.93 16 3 C 0.04 0.65 6.28 37.16 0.23 0.88 16 4 C 0.11 1.89 5.52 -4.04 -0.02 1.87 16 5 N -0.58 -13.05 2.42 -176.46 -0.43 -13.47 16 6 C 0.25 6.89 4.98 -5.20 -0.03 6.87 16 7 C -0.52 -15.50 9.39 -34.44 -0.32 -15.83 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 11 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.53 11.70 7.62 -12.66 -0.10 11.60 16 16 O -0.55 -14.51 15.80 5.27 0.08 -14.43 16 17 C -0.20 -3.23 8.82 -37.81 -0.33 -3.57 16 18 C -0.08 -1.15 8.35 -36.13 -0.30 -1.45 16 19 C -0.06 -0.63 2.49 -91.77 -0.23 -0.86 16 20 C -0.11 -1.04 5.19 -26.73 -0.14 -1.18 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 24 C -0.11 -1.08 5.18 -26.73 -0.14 -1.22 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 31 H 0.08 1.11 6.11 -51.92 -0.32 0.79 16 32 H 0.05 1.30 7.11 -51.93 -0.37 0.93 16 33 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.12 1.51 6.04 -52.48 -0.32 1.19 16 36 H 0.12 1.98 7.49 -52.49 -0.39 1.58 16 37 H 0.07 0.73 7.81 -51.93 -0.41 0.32 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -35.08 378.25 -8.59 -43.67 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.49 Total: -2.36 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.83 Total: -2.87 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.31 Total: -40.31 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.25 Total: -21.35 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.08 -8.59 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749306155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.736 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds