Wall clock time and date at job start Tue Mar 31 2020 08:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99940 * 2 1 4 4 C 1.52999 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47276 * 64.99924 * 4 3 2 6 6 C 1.46499 * 120.00136 * 269.99459 * 5 4 3 7 7 C 1.50697 * 109.47293 * 270.00491 * 6 5 4 8 8 H 1.07997 * 120.00010 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00091 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00149 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00247 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47226 * 89.99205 * 11 9 7 13 13 H 1.48494 * 109.47051 * 209.99874 * 11 9 7 14 14 H 1.48508 * 109.46947 * 329.99558 * 11 9 7 15 15 C 1.34784 * 119.99971 * 89.99654 * 5 4 3 16 16 O 1.21610 * 119.99781 * 179.97438 * 15 5 4 17 17 C 1.47102 * 119.99985 * 359.72523 * 15 5 4 18 18 C 1.32994 * 119.99739 * 180.02562 * 17 15 5 19 19 C 1.50697 * 119.99528 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46865 * 239.99510 * 19 18 17 21 21 C 1.53003 * 109.47147 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46915 * 60.00322 * 21 20 19 23 23 C 1.53000 * 109.47253 * 299.99840 * 22 21 20 24 24 C 1.52994 * 109.47120 * 60.00061 * 23 22 21 25 25 H 1.09005 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47677 * 300.00251 * 1 2 3 27 27 H 1.09000 * 109.46962 * 60.00702 * 1 2 3 28 28 H 1.08996 * 109.47579 * 59.99695 * 3 2 1 29 29 H 1.08999 * 109.46914 * 299.99780 * 3 2 1 30 30 H 1.08998 * 109.47074 * 304.99499 * 4 3 2 31 31 H 1.09008 * 109.46412 * 184.99505 * 4 3 2 32 32 H 1.08997 * 109.46865 * 30.00228 * 6 5 4 33 33 H 1.08998 * 109.47058 * 149.99741 * 6 5 4 34 34 H 0.96995 * 120.00744 * 180.02562 * 10 9 7 35 35 H 1.08004 * 119.99913 * 359.97438 * 17 15 5 36 36 H 1.07998 * 119.99892 * 359.97438 * 18 17 15 37 37 H 1.09001 * 109.47434 * 359.97438 * 19 18 17 38 38 H 1.09001 * 109.47378 * 300.00386 * 20 19 18 39 39 H 1.09004 * 109.46828 * 60.00326 * 20 19 18 40 40 H 1.09001 * 109.47245 * 299.99849 * 21 20 19 41 41 H 1.09002 * 109.46620 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46851 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47094 * 59.99989 * 22 21 20 44 44 H 1.09001 * 109.47192 * 300.00089 * 23 22 21 45 45 H 1.09004 * 109.47131 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47504 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47066 * 59.99950 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.1063 -0.8927 -1.3402 7 6 5.5017 -1.2982 -0.9410 8 1 6.2202 -0.5463 -0.6502 9 6 5.8613 -2.6292 -0.9480 10 7 4.9865 -3.5450 -1.3026 11 14 7.5912 -3.1320 -0.4539 12 1 7.6346 -3.3841 1.0089 13 1 7.9740 -4.3688 -1.1811 14 1 8.5403 -2.0424 -0.7967 15 6 4.2633 1.3328 -2.3200 16 8 4.6301 0.8175 -3.3588 17 6 4.1274 2.7949 -2.2322 18 6 4.4098 3.5535 -3.2874 19 6 4.2711 5.0514 -3.1971 20 6 3.2526 5.5325 -4.2326 21 6 3.1121 7.0533 -4.1414 22 6 4.4673 7.7080 -4.4167 23 6 5.4858 7.2269 -3.3813 24 6 5.6262 5.7062 -3.4724 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1765 0.0901 32 1 3.3858 -1.3633 -0.6713 33 1 3.9139 -1.2124 -2.3643 34 1 5.2393 -4.4814 -1.3071 35 1 3.7975 3.2521 -1.3110 36 1 4.7393 3.0962 -4.2086 37 1 3.9306 5.3253 -2.1985 38 1 3.5926 5.2586 -5.2313 39 1 2.2872 5.0657 -4.0367 40 1 2.7722 7.3277 -3.1428 41 1 2.3862 7.3959 -4.8788 42 1 4.3673 8.7914 -4.3514 43 1 4.8071 7.4337 -5.4154 44 1 5.1460 7.5012 -2.3827 45 1 6.4512 7.6937 -3.5772 46 1 6.3515 5.3633 -2.7345 47 1 5.9661 5.4318 -4.4711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749306155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:27 Heat of formation + Delta-G solvation = -112.270882 kcal Electronic energy + Delta-G solvation = -24231.695691 eV Core-core repulsion = 20799.048343 eV Total energy + Delta-G solvation = -3432.647348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80976 -39.53294 -38.73287 -36.55280 -35.01429 -34.58914 -31.58646 -31.28481 -30.60978 -28.91781 -27.09602 -25.66214 -24.16126 -23.53540 -23.38054 -21.33102 -20.73195 -19.49745 -18.64937 -18.28473 -17.44850 -17.00359 -16.64419 -16.30303 -16.11553 -16.00351 -15.32241 -15.02609 -15.00857 -14.97559 -14.54156 -14.26471 -13.69721 -13.54849 -13.45943 -13.07991 -13.05532 -13.02517 -12.95875 -12.78873 -12.67064 -12.51479 -12.19359 -11.97594 -11.96423 -11.86502 -11.69257 -11.32381 -11.15131 -11.13106 -10.63156 -10.60376 -10.51604 -10.25194 -9.38079 -8.19421 -6.35063 0.49526 1.35190 1.39081 1.49494 2.30001 2.47188 2.49645 2.98591 3.09379 3.55104 3.81780 3.94334 4.00494 4.11721 4.18545 4.31590 4.33554 4.42431 4.43814 4.45902 4.54112 4.56161 4.60347 4.64820 4.66181 4.68177 4.79248 4.85789 4.94924 5.00143 5.13295 5.19422 5.20749 5.27590 5.30480 5.31350 5.37779 5.48093 5.49134 5.55696 5.61956 5.66040 5.90175 6.10058 6.35703 6.73770 6.85322 7.29593 7.50347 8.87714 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.003829 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.137101 B = 7311.087529 C = 8754.676567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.591 5.591 6 C 0.272 3.728 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.004 3.996 10 N -0.929 5.929 11 Si 0.971 3.029 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.519 3.481 16 O -0.611 6.611 17 C -0.214 4.214 18 C -0.055 4.055 19 C -0.053 4.053 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.114 4.114 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.028 0.972 33 H -0.015 1.015 34 H 0.266 0.734 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 24.777 1.734 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.031 4.031 4 C -0.019 4.019 5 N -0.319 5.319 6 C 0.150 3.850 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.795 3.205 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.311 3.689 16 O -0.495 6.495 17 C -0.234 4.234 18 C -0.076 4.076 19 C -0.072 4.072 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.152 4.152 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.046 0.954 33 H 0.003 0.997 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.405 24.127 1.228 24.993 hybrid contribution 0.581 -1.133 -0.163 1.283 sum -5.823 22.994 1.065 23.744 Atomic orbital electron populations 1.22851 0.80040 1.03030 1.00836 1.88044 1.21190 1.29126 1.95533 1.23193 0.93314 0.84756 1.01855 1.21928 0.93351 1.00320 0.86255 1.48053 1.63801 1.07901 1.12180 1.18624 0.95585 0.75914 0.94857 1.21760 0.98256 0.92708 1.45587 0.92944 1.25920 1.02116 0.96324 0.95070 1.70085 1.36685 1.01399 1.48745 0.85373 0.78727 0.77556 0.78865 1.18646 1.20526 1.19713 1.19479 0.77160 0.89403 0.82883 1.90696 1.50301 1.76683 1.31805 1.22776 1.08359 0.90106 1.02163 1.23843 0.90254 0.96541 0.96927 1.20437 0.96965 0.88200 1.01570 1.21557 0.98278 0.96842 0.98340 1.21512 0.97480 0.93581 1.02584 1.21570 0.94986 1.00379 0.98944 1.21512 0.99656 0.93929 1.00086 1.21560 0.95580 0.96226 1.01784 0.90201 0.91745 0.93875 0.88733 0.92946 0.90564 0.85655 0.95404 0.99720 0.92492 0.82137 0.88529 0.88517 0.92516 0.91834 0.90991 0.91268 0.90882 0.92520 0.91007 0.91392 0.92075 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.90 9.53 -148.98 -1.42 -16.32 16 3 C 0.05 1.26 6.28 71.98 0.45 1.71 16 4 C 0.10 3.40 5.52 86.38 0.48 3.88 16 5 N -0.59 -27.22 2.42 -830.44 -2.01 -29.23 16 6 C 0.27 15.96 4.98 85.63 0.43 16.39 16 7 C -0.54 -33.48 9.39 25.60 0.24 -33.24 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 9 C 0.00 0.26 5.46 84.65 0.46 0.72 16 10 N -0.93 -59.36 13.29 21.45 0.28 -59.08 16 11 Si 0.97 46.99 29.54 68.60 2.03 49.02 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 15 C 0.52 23.65 7.62 86.57 0.66 24.31 16 16 O -0.61 -34.64 15.80 -4.06 -0.06 -34.71 16 17 C -0.21 -6.55 8.82 23.43 0.21 -6.34 16 18 C -0.06 -1.52 8.35 24.52 0.20 -1.32 16 19 C -0.05 -0.97 2.49 -11.54 -0.03 -1.00 16 20 C -0.11 -1.86 5.19 30.60 0.16 -1.70 16 21 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 22 C -0.12 -1.44 5.92 30.59 0.18 -1.25 16 23 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 24 C -0.11 -1.96 5.18 30.59 0.16 -1.81 16 25 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.13 2.95 6.11 -2.38 -0.01 2.94 16 32 H 0.03 1.71 7.11 -2.39 -0.02 1.69 16 33 H -0.02 -1.05 7.42 -2.39 -0.02 -1.07 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 35 H 0.16 3.47 6.04 -2.91 -0.02 3.45 16 36 H 0.10 3.21 7.49 -2.91 -0.02 3.19 16 37 H 0.10 1.44 7.81 -2.39 -0.02 1.42 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -82.74 378.25 4.94 -77.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.91 Total: 12.68 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.21 Total: -0.16 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.72 Total: -88.31 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -1.48 Total: -51.03 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -82.74 4.94 -77.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749306155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.473 kcal (2) G-P(sol) polarization free energy of solvation -82.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds