Wall clock time and date at job start Tue Mar 31 2020 08:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00129 * 2 1 4 4 C 1.53003 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46876 * 65.00019 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99771 * 5 4 3 7 7 C 1.50702 * 109.46715 * 90.00380 * 6 5 4 8 8 H 1.07999 * 120.00177 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99608 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99719 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47266 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47090 * 119.99349 * 11 9 7 14 14 H 1.48507 * 109.47015 * 239.99518 * 11 9 7 15 15 C 1.34773 * 120.00424 * 270.00308 * 5 4 3 16 16 O 1.21616 * 119.99805 * 359.97438 * 15 5 4 17 17 C 1.47104 * 120.00372 * 179.97438 * 15 5 4 18 18 C 1.32995 * 119.99844 * 186.76147 * 17 15 5 19 19 C 1.50695 * 120.00144 * 16.73546 * 18 17 15 20 20 C 1.52998 * 109.47475 * 253.42012 * 19 18 17 21 21 C 1.52993 * 109.47366 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47169 * 60.00103 * 21 20 19 23 23 C 1.52991 * 109.46910 * 299.99706 * 22 21 20 24 24 C 1.53004 * 109.47048 * 133.42122 * 19 18 17 25 25 H 1.09006 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46758 * 300.00070 * 1 2 3 27 27 H 1.08994 * 109.46905 * 59.99757 * 1 2 3 28 28 H 1.09007 * 109.47119 * 59.99759 * 3 2 1 29 29 H 1.08999 * 109.47135 * 300.00087 * 3 2 1 30 30 H 1.08997 * 109.47322 * 305.00465 * 4 3 2 31 31 H 1.08997 * 109.47043 * 185.00168 * 4 3 2 32 32 H 1.08999 * 109.47036 * 210.00196 * 6 5 4 33 33 H 1.08997 * 109.47316 * 330.00160 * 6 5 4 34 34 H 0.97000 * 119.99804 * 180.02562 * 10 9 7 35 35 H 1.07997 * 119.99628 * 6.76523 * 17 15 5 36 36 H 1.08000 * 120.00009 * 196.73387 * 18 17 15 37 37 H 1.08999 * 109.47120 * 13.42207 * 19 18 17 38 38 H 1.08999 * 109.47106 * 300.00204 * 20 19 18 39 39 H 1.09003 * 109.47189 * 59.99885 * 20 19 18 40 40 H 1.08999 * 109.47108 * 300.00122 * 21 20 19 41 41 H 1.09003 * 109.47447 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46819 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47091 * 60.00008 * 22 21 20 44 44 H 1.09001 * 109.47907 * 300.00369 * 23 22 21 45 45 H 1.09006 * 109.47084 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47015 * 299.99730 * 24 19 18 47 47 H 1.08999 * 109.47091 * 60.00068 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2882 1.3998 -2.4130 7 6 5.7461 1.7801 -2.3818 8 1 6.3773 1.4342 -1.5766 9 6 6.2739 2.5706 -3.3806 10 7 5.5051 2.9922 -4.3608 11 14 8.0808 3.0426 -3.3416 12 1 8.7226 2.4457 -2.1429 13 1 8.7513 2.5365 -4.5662 14 1 8.2050 4.5214 -3.2843 15 6 4.0958 -0.7760 -1.3332 16 8 3.8376 -1.4699 -0.3684 17 6 4.5383 -1.3993 -2.5901 18 6 4.5275 -2.7233 -2.7156 19 6 3.7297 -3.5649 -1.7533 20 6 4.6806 -4.2782 -0.7901 21 6 3.8707 -5.1332 0.1865 22 6 3.0620 -6.1714 -0.5940 23 6 2.1110 -5.4580 -1.5570 24 6 2.9205 -4.6030 -2.5333 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1764 0.0902 32 1 4.0771 0.8446 -3.3270 33 1 3.6768 2.3017 -2.3863 34 1 5.8766 3.5480 -5.0637 35 1 4.8719 -0.7817 -3.4108 36 1 5.0904 -3.1953 -3.5073 37 1 3.0516 -2.9259 -1.1876 38 1 5.3587 -4.9172 -1.3557 39 1 5.2571 -3.5387 -0.2343 40 1 3.1923 -4.4945 0.7522 41 1 4.5481 -5.6411 0.8730 42 1 2.4846 -6.7801 0.1018 43 1 3.7404 -6.8100 -1.1596 44 1 1.4326 -4.8193 -0.9914 45 1 1.5352 -6.1977 -2.1134 46 1 2.2430 -4.0949 -3.2194 47 1 3.5987 -5.2420 -3.0989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749306157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:30 Heat of formation + Delta-G solvation = -82.187598 kcal Electronic energy + Delta-G solvation = -25200.472362 eV Core-core repulsion = 21769.129522 eV Total energy + Delta-G solvation = -3431.342839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.38218 -38.12476 -37.20256 -34.91972 -33.27047 -32.52760 -30.45837 -30.17417 -28.83619 -26.95616 -26.00146 -23.58438 -22.98470 -22.28081 -21.99321 -20.16372 -19.50766 -17.59395 -16.58180 -16.40826 -16.14045 -15.60912 -15.13907 -14.84779 -14.63648 -14.25645 -14.11020 -13.86404 -13.53017 -13.35624 -12.90663 -12.48397 -12.40507 -12.21421 -12.05038 -11.90956 -11.68014 -11.62844 -11.43252 -11.17702 -10.97013 -10.88428 -10.84681 -10.65080 -10.61259 -10.22812 -10.12328 -9.99532 -9.69477 -9.66416 -9.30387 -8.71543 -8.53807 -8.35653 -7.53714 -6.16115 -4.23454 2.09776 3.22518 3.31272 3.36156 4.03891 4.17790 4.26925 4.39198 4.93389 5.00651 5.05346 5.16727 5.40446 5.42752 5.49251 5.55095 5.56374 5.65000 5.66818 5.69464 5.79024 5.79939 5.81019 5.83715 5.86640 5.89315 6.07691 6.13264 6.21001 6.23573 6.34594 6.37857 6.45249 6.49715 6.53204 6.75296 6.79779 6.91679 7.02655 7.23361 7.28638 7.51086 7.68956 7.81022 8.09844 8.50191 8.85513 9.25023 9.45502 10.90088 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.004911 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.447984 B = 5699.798825 C = 7000.105167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.238 3.762 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.548 3.452 16 O -0.549 6.549 17 C -0.189 4.189 18 C -0.092 4.092 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -10.574 5.282 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.118 3.882 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.339 3.661 16 O -0.430 6.430 17 C -0.210 4.210 18 C -0.112 4.112 19 C -0.094 4.094 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.149 4.149 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.352 -10.944 5.610 14.328 hybrid contribution 0.883 0.888 -0.400 1.315 sum -6.468 -10.055 5.210 13.042 Atomic orbital electron populations 1.22659 0.82671 1.02019 0.99142 1.88116 1.18058 1.27262 1.95147 1.23053 0.95563 0.85011 0.99588 1.21259 0.90851 0.99303 0.88655 1.48005 1.64505 1.06187 1.13559 1.19412 0.95947 0.90059 0.82790 1.21590 0.94777 1.31611 1.09325 0.92041 1.24945 0.98160 0.95613 0.95163 1.69936 1.35641 1.35466 1.12102 0.86479 0.84868 0.78215 0.78154 1.19661 1.20850 1.20922 1.18423 0.77071 0.82095 0.88491 1.90603 1.51520 1.61688 1.39236 1.23008 1.04040 0.95776 0.98145 1.23506 0.94977 0.94291 0.98442 1.20757 0.97426 0.95985 0.95196 1.21311 0.97310 0.97868 0.96761 1.21487 0.98801 0.97255 0.97782 1.21530 0.98146 0.97742 0.98069 1.21478 0.97834 0.98543 0.97502 1.21580 0.98525 0.97219 0.97605 0.90271 0.94861 0.94682 0.93463 0.93312 0.90213 0.89171 0.94334 0.95015 0.92645 0.84638 0.87000 0.86513 0.93464 0.91449 0.91674 0.92867 0.92757 0.92503 0.91994 0.92698 0.92417 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.53 9.49 -42.94 -0.41 -6.94 16 3 C 0.05 0.75 6.28 37.16 0.23 0.99 16 4 C 0.12 2.30 5.86 -4.04 -0.02 2.27 16 5 N -0.59 -12.69 2.44 -176.45 -0.43 -13.12 16 6 C 0.24 5.68 4.83 -5.19 -0.03 5.66 16 7 C -0.53 -13.92 9.39 -34.44 -0.32 -14.25 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 11 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.55 11.72 7.00 -12.67 -0.09 11.64 16 16 O -0.55 -12.00 11.43 -2.45 -0.03 -12.02 16 17 C -0.19 -3.73 9.11 -37.80 -0.34 -4.08 16 18 C -0.09 -1.55 8.81 -36.13 -0.32 -1.87 16 19 C -0.08 -1.20 1.64 -91.77 -0.15 -1.35 16 20 C -0.09 -1.43 4.93 -26.74 -0.13 -1.56 16 21 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 22 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 23 C -0.12 -1.38 5.92 -26.76 -0.16 -1.54 16 24 C -0.11 -1.48 5.18 -26.75 -0.14 -1.62 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.52 7.42 -51.93 -0.39 1.13 16 31 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 32 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.14 2.83 6.35 -52.49 -0.33 2.50 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.22 5.30 -51.93 -0.28 1.94 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.17 7.54 -51.93 -0.39 0.78 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -28.68 371.89 -8.75 -37.42 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.43 Total: 3.08 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.77 Total: -5.77 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.31 Total: -36.96 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.44 Total: -18.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.68 -8.75 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749306157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.763 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds