Wall clock time and date at job start Tue Mar 31 2020 08:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00129 * 2 1 4 4 C 1.53003 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46876 * 65.00019 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99771 * 5 4 3 7 7 C 1.50702 * 109.46715 * 90.00380 * 6 5 4 8 8 H 1.07999 * 120.00177 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99608 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99719 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47266 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47090 * 119.99349 * 11 9 7 14 14 H 1.48507 * 109.47015 * 239.99518 * 11 9 7 15 15 C 1.34773 * 120.00424 * 270.00308 * 5 4 3 16 16 O 1.21616 * 119.99805 * 359.97438 * 15 5 4 17 17 C 1.47104 * 120.00372 * 179.97438 * 15 5 4 18 18 C 1.32995 * 119.99844 * 186.76147 * 17 15 5 19 19 C 1.50695 * 120.00144 * 16.73546 * 18 17 15 20 20 C 1.52998 * 109.47475 * 253.42012 * 19 18 17 21 21 C 1.52993 * 109.47366 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47169 * 60.00103 * 21 20 19 23 23 C 1.52991 * 109.46910 * 299.99706 * 22 21 20 24 24 C 1.53004 * 109.47048 * 133.42122 * 19 18 17 25 25 H 1.09006 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46758 * 300.00070 * 1 2 3 27 27 H 1.08994 * 109.46905 * 59.99757 * 1 2 3 28 28 H 1.09007 * 109.47119 * 59.99759 * 3 2 1 29 29 H 1.08999 * 109.47135 * 300.00087 * 3 2 1 30 30 H 1.08997 * 109.47322 * 305.00465 * 4 3 2 31 31 H 1.08997 * 109.47043 * 185.00168 * 4 3 2 32 32 H 1.08999 * 109.47036 * 210.00196 * 6 5 4 33 33 H 1.08997 * 109.47316 * 330.00160 * 6 5 4 34 34 H 0.97000 * 119.99804 * 180.02562 * 10 9 7 35 35 H 1.07997 * 119.99628 * 6.76523 * 17 15 5 36 36 H 1.08000 * 120.00009 * 196.73387 * 18 17 15 37 37 H 1.08999 * 109.47120 * 13.42207 * 19 18 17 38 38 H 1.08999 * 109.47106 * 300.00204 * 20 19 18 39 39 H 1.09003 * 109.47189 * 59.99885 * 20 19 18 40 40 H 1.08999 * 109.47108 * 300.00122 * 21 20 19 41 41 H 1.09003 * 109.47447 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46819 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47091 * 60.00008 * 22 21 20 44 44 H 1.09001 * 109.47907 * 300.00369 * 23 22 21 45 45 H 1.09006 * 109.47084 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47015 * 299.99730 * 24 19 18 47 47 H 1.08999 * 109.47091 * 60.00068 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2882 1.3998 -2.4130 7 6 5.7461 1.7801 -2.3818 8 1 6.3773 1.4342 -1.5766 9 6 6.2739 2.5706 -3.3806 10 7 5.5051 2.9922 -4.3608 11 14 8.0808 3.0426 -3.3416 12 1 8.7226 2.4457 -2.1429 13 1 8.7513 2.5365 -4.5662 14 1 8.2050 4.5214 -3.2843 15 6 4.0958 -0.7760 -1.3332 16 8 3.8376 -1.4699 -0.3684 17 6 4.5383 -1.3993 -2.5901 18 6 4.5275 -2.7233 -2.7156 19 6 3.7297 -3.5649 -1.7533 20 6 4.6806 -4.2782 -0.7901 21 6 3.8707 -5.1332 0.1865 22 6 3.0620 -6.1714 -0.5940 23 6 2.1110 -5.4580 -1.5570 24 6 2.9205 -4.6030 -2.5333 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1764 0.0902 32 1 4.0771 0.8446 -3.3270 33 1 3.6768 2.3017 -2.3863 34 1 5.8766 3.5480 -5.0637 35 1 4.8719 -0.7817 -3.4108 36 1 5.0904 -3.1953 -3.5073 37 1 3.0516 -2.9259 -1.1876 38 1 5.3587 -4.9172 -1.3557 39 1 5.2571 -3.5387 -0.2343 40 1 3.1923 -4.4945 0.7522 41 1 4.5481 -5.6411 0.8730 42 1 2.4846 -6.7801 0.1018 43 1 3.7404 -6.8100 -1.1596 44 1 1.4326 -4.8193 -0.9914 45 1 1.5352 -6.1977 -2.1134 46 1 2.2430 -4.0949 -3.2194 47 1 3.5987 -5.2420 -3.0989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749306157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:30 Heat of formation + Delta-G solvation = -96.323834 kcal Electronic energy + Delta-G solvation = -25201.085355 eV Core-core repulsion = 21769.129522 eV Total energy + Delta-G solvation = -3431.955833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92621 -39.36203 -38.51515 -36.61348 -34.77772 -34.35374 -31.61138 -31.52230 -30.18825 -28.80220 -27.19460 -25.02911 -24.84131 -23.37937 -23.24016 -21.59858 -20.61918 -19.26054 -18.48176 -18.04659 -17.50702 -16.97342 -16.52778 -16.42456 -16.01233 -15.82502 -15.24462 -15.02133 -14.93085 -14.66030 -14.31441 -14.20680 -13.83508 -13.51817 -13.38351 -13.35280 -13.04483 -12.98727 -12.95618 -12.70901 -12.62678 -12.45831 -12.10330 -11.94035 -11.91312 -11.87608 -11.64359 -11.34019 -11.10959 -10.85233 -10.63381 -10.56220 -10.19550 -9.87457 -9.26953 -8.18865 -6.34310 0.59863 1.39856 1.42982 1.54039 2.34656 2.53895 2.60647 2.98855 3.10198 3.80406 3.94459 4.01065 4.01807 4.18015 4.25825 4.33133 4.42415 4.46700 4.50494 4.53385 4.54356 4.64686 4.71055 4.72274 4.75447 4.79220 4.81898 4.88471 4.93911 4.96941 5.02833 5.19916 5.22356 5.25747 5.33107 5.39612 5.42779 5.58210 5.59223 5.60784 5.68999 5.90274 5.97362 6.08644 6.34952 6.65855 6.90618 7.35963 7.60877 8.85994 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.004911 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.447984 B = 5699.798825 C = 7000.105167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.257 3.743 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.022 3.978 10 N -0.921 5.921 11 Si 0.957 3.043 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.542 3.458 16 O -0.559 6.559 17 C -0.228 4.228 18 C -0.060 4.060 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.107 4.107 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -12.279 5.291 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.025 4.025 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.136 3.864 7 C -0.582 4.582 8 H 0.068 0.932 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.783 3.217 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.202 1.202 15 C 0.334 3.666 16 O -0.442 6.442 17 C -0.249 4.249 18 C -0.080 4.080 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.145 4.145 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.313 -12.649 5.635 15.660 hybrid contribution 0.818 1.346 -0.374 1.618 sum -6.495 -11.303 5.262 14.058 Atomic orbital electron populations 1.22840 0.80490 1.03072 1.00422 1.88066 1.20556 1.27927 1.95412 1.22956 0.93779 0.84976 1.00751 1.21415 0.92810 0.99091 0.87177 1.48008 1.64970 1.06242 1.13741 1.19007 0.94742 0.89428 0.83269 1.21722 0.95641 1.31716 1.09080 0.93210 1.25647 1.02009 0.95471 0.94733 1.70021 1.37340 1.36008 1.12670 0.85517 0.80092 0.78055 0.78054 1.19748 1.20278 1.20193 1.18703 0.76808 0.82020 0.89039 1.90599 1.52155 1.61684 1.39712 1.22841 1.07513 0.96868 0.97691 1.23939 0.92411 0.93376 0.98235 1.20703 0.97157 0.96258 0.95283 1.21257 0.97296 0.97543 0.96811 1.21458 0.98685 0.97302 0.97653 1.21512 0.98129 0.97200 0.98134 1.21483 0.97742 0.98639 0.97389 1.21553 0.98563 0.96735 0.97637 0.89431 0.92640 0.94226 0.90259 0.93952 0.90962 0.88689 0.95869 0.96349 0.92331 0.86373 0.84055 0.89830 0.91549 0.94590 0.93840 0.91563 0.91155 0.91005 0.93427 0.90387 0.92709 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -14.33 9.49 -141.61 -1.34 -15.68 16 3 C 0.05 1.75 6.28 71.98 0.45 2.20 16 4 C 0.12 4.53 5.86 86.38 0.51 5.04 16 5 N -0.60 -26.78 2.44 -830.43 -2.03 -28.80 16 6 C 0.26 12.78 4.83 85.63 0.41 13.20 16 7 C -0.54 -29.04 9.39 25.60 0.24 -28.80 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.02 1.15 5.46 84.66 0.46 1.61 16 10 N -0.92 -51.31 13.29 21.45 0.28 -51.02 16 11 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 15 C 0.54 24.18 7.00 86.57 0.61 24.79 16 16 O -0.56 -25.42 11.43 3.29 0.04 -25.39 16 17 C -0.23 -9.33 9.11 23.43 0.21 -9.12 16 18 C -0.06 -1.99 8.81 24.52 0.22 -1.78 16 19 C -0.08 -2.36 1.64 -11.54 -0.02 -2.38 16 20 C -0.09 -2.67 4.93 30.59 0.15 -2.52 16 21 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 22 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 23 C -0.12 -2.46 5.92 30.58 0.18 -2.28 16 24 C -0.11 -2.61 5.18 30.58 0.16 -2.45 16 25 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.85 7.42 -2.39 -0.02 2.83 16 31 H 0.09 3.45 8.07 -2.39 -0.02 3.43 16 32 H 0.02 1.23 6.19 -2.39 -0.01 1.21 16 33 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.12 5.20 6.35 -2.91 -0.02 5.18 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.08 3.25 5.30 -2.39 -0.01 3.24 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.26 7.54 -2.39 -0.02 1.24 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -62.94 371.89 5.08 -57.86 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.91 Total: 23.83 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.19 Total: -5.23 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.74 Total: -79.83 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.31 Total: -41.06 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.94 5.08 -57.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749306157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.468 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds