Wall clock time and date at job start Tue Mar 31 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53004 * 109.47035 * 119.99838 * 2 1 3 5 5 N 1.46494 * 109.47156 * 177.96148 * 4 2 1 6 6 C 1.46503 * 120.00082 * 276.58363 * 5 4 2 7 7 C 1.50703 * 109.47210 * 274.46097 * 6 5 4 8 8 H 1.08002 * 119.99802 * 355.37907 * 7 6 5 9 9 C 1.37869 * 120.00089 * 175.37038 * 7 6 5 10 10 N 1.31515 * 120.00270 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99967 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47284 * 89.99617 * 11 9 7 13 13 H 1.48506 * 109.46887 * 209.99812 * 11 9 7 14 14 H 1.48501 * 109.46858 * 329.99135 * 11 9 7 15 15 C 1.34779 * 120.00181 * 96.58219 * 5 4 2 16 16 O 1.21282 * 120.00207 * 184.92462 * 15 5 4 17 17 C 1.50704 * 119.99747 * 4.93092 * 15 5 4 18 18 C 1.53004 * 109.46700 * 186.02572 * 17 15 5 19 19 H 1.09002 * 110.50948 * 307.75087 * 18 17 15 20 20 C 1.54982 * 110.57157 * 70.67143 * 18 17 15 21 21 C 1.54882 * 102.33597 * 155.65049 * 20 18 17 22 22 C 1.51848 * 104.43099 * 322.36970 * 21 20 18 23 23 O 1.20760 * 126.34485 * 203.81133 * 22 21 20 24 24 C 1.51451 * 107.31587 * 23.79323 * 22 21 20 25 25 H 1.08997 * 109.98189 * 240.28851 * 24 22 21 26 26 C 1.53000 * 109.98246 * 118.98998 * 24 22 21 27 27 H 1.09003 * 109.47693 * 299.99947 * 1 2 3 28 28 H 1.09009 * 109.47144 * 60.00167 * 1 2 3 29 29 H 1.09006 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47258 * 239.99756 * 2 1 3 31 31 H 1.08994 * 109.47141 * 304.77546 * 3 2 1 32 32 H 1.09000 * 109.47169 * 64.77748 * 3 2 1 33 33 H 1.08997 * 109.46936 * 184.77399 * 3 2 1 34 34 H 1.09000 * 109.46950 * 57.95802 * 4 2 1 35 35 H 1.08997 * 109.46938 * 297.96221 * 4 2 1 36 36 H 1.08996 * 109.47294 * 154.46542 * 6 5 4 37 37 H 1.09001 * 109.47033 * 34.46103 * 6 5 4 38 38 H 0.97003 * 120.00473 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.46706 * 306.02503 * 17 15 5 40 40 H 1.09002 * 109.46777 * 66.02680 * 17 15 5 41 41 H 1.09008 * 110.82892 * 273.86063 * 20 18 17 42 42 H 1.09000 * 110.83129 * 37.43277 * 20 18 17 43 43 H 1.09001 * 110.44238 * 203.63852 * 21 20 18 44 44 H 1.08993 * 110.55017 * 81.16166 * 21 20 18 45 45 H 1.09003 * 109.47042 * 302.58257 * 26 24 22 46 46 H 1.08997 * 109.47174 * 62.58412 * 26 24 22 47 47 H 1.08999 * 109.46836 * 182.58706 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.7639 1.2250 6 6 4.1939 -1.8124 0.4692 7 6 4.3277 -3.0444 1.3267 8 1 4.0056 -3.0226 2.3573 9 6 4.8612 -4.1994 0.7955 10 7 4.9785 -5.2745 1.5439 11 14 5.4188 -4.2370 -0.9870 12 1 6.8463 -3.8358 -1.0677 13 1 5.2594 -5.6113 -1.5266 14 1 4.5936 -3.2937 -1.7837 15 6 4.2165 0.1613 1.8979 16 8 5.4257 0.1805 1.8060 17 6 3.5106 1.1720 2.7648 18 6 4.5248 2.1898 3.2906 19 1 5.3652 1.6819 3.7638 20 6 5.0160 3.1108 2.1450 21 6 5.4692 4.3785 2.9108 22 6 4.4505 4.5310 4.0265 23 8 4.1691 5.5536 4.6039 24 6 3.8523 3.1631 4.2808 25 1 2.7767 3.1885 4.1059 26 6 4.1384 2.7264 5.7190 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6084 1.9804 -0.8441 32 1 1.7482 1.9310 0.9297 33 1 3.1265 1.4437 -0.0855 34 1 1.6470 -1.7378 1.2678 35 1 1.7067 -0.1867 2.1388 36 1 5.1846 -1.4608 0.1814 37 1 3.6196 -2.0530 -0.4254 38 1 5.3542 -6.0870 1.1703 39 1 2.7505 1.6867 2.1772 40 1 3.0377 0.6630 3.6047 41 1 5.8540 2.6575 1.6154 42 1 4.2020 3.3429 1.4582 43 1 5.4474 5.2481 2.2540 44 1 6.4681 4.2393 3.3238 45 1 5.2147 2.7262 5.8913 46 1 3.6598 3.4193 6.4111 47 1 3.7446 1.7228 5.8791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793239488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:08 Heat of formation + Delta-G solvation = -98.742551 kcal Electronic energy + Delta-G solvation = -25223.748138 eV Core-core repulsion = 21791.687422 eV Total energy + Delta-G solvation = -3432.060716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34213 -39.27175 -36.87916 -36.22501 -33.74029 -32.31549 -31.62739 -30.81691 -28.17692 -27.15297 -25.82299 -24.91950 -24.63550 -22.25707 -20.57065 -20.33370 -19.17006 -18.19199 -16.95537 -16.76539 -16.14925 -15.79259 -15.27135 -15.18853 -14.63829 -14.42597 -14.19909 -13.91598 -13.65883 -13.39332 -13.29452 -12.93640 -12.62258 -12.56297 -12.39662 -12.28040 -12.15426 -11.83092 -11.68644 -11.60127 -11.38524 -11.09727 -11.03236 -11.00863 -10.78230 -10.72956 -10.56347 -10.47866 -10.30282 -10.12598 -9.57183 -9.49934 -8.97207 -8.61824 -7.69328 -6.11813 -4.10667 1.79635 3.26604 3.32222 3.32730 3.34448 3.76701 3.99324 4.36390 4.37408 4.56969 4.73927 4.95764 4.99163 5.03413 5.03889 5.15476 5.21761 5.24106 5.29832 5.35801 5.40938 5.46181 5.59650 5.63346 5.66119 5.72995 5.74052 5.79244 5.86401 5.91887 5.94074 6.00046 6.02900 6.12477 6.18619 6.20314 6.34051 6.41714 6.45996 6.72431 6.97148 7.33382 7.35972 7.59512 8.26064 8.44845 8.89956 8.97436 9.48826 11.01479 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004451 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.047235 B = 6289.243945 C = 7066.744994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.214 3.786 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.512 3.488 16 O -0.545 6.545 17 C -0.146 4.146 18 C -0.068 4.068 19 H 0.096 0.904 20 C -0.114 4.114 21 C -0.183 4.183 22 C 0.375 3.625 23 O -0.452 6.452 24 C -0.152 4.152 25 H 0.102 0.898 26 C -0.138 4.138 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 16.164 0.506 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.207 4.207 4 C -0.009 4.009 5 N -0.321 5.321 6 C 0.093 3.907 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.300 3.700 16 O -0.423 6.423 17 C -0.186 4.186 18 C -0.087 4.087 19 H 0.114 0.886 20 C -0.151 4.151 21 C -0.221 4.221 22 C 0.250 3.750 23 O -0.325 6.325 24 C -0.171 4.171 25 H 0.120 0.880 26 C -0.195 4.195 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.482 16.496 0.756 17.740 hybrid contribution 0.214 -0.459 -0.945 1.072 sum -6.267 16.037 -0.189 17.220 Atomic orbital electron populations 1.21763 0.94896 1.01960 1.01458 1.21563 0.95546 0.96521 1.00061 1.22011 1.01569 0.96031 1.01079 1.21553 0.81064 1.01638 0.96657 1.47859 1.05681 1.28667 1.49927 1.19650 0.93246 0.86094 0.91701 1.21341 1.42047 0.94020 0.99356 0.90789 1.24851 0.95054 0.95356 0.97702 1.69895 1.45320 1.02108 1.36293 0.86872 0.79964 0.77464 0.85528 1.19931 1.21098 1.19019 1.20262 0.87663 0.81669 0.80441 1.90639 1.14127 1.73291 1.64224 1.22036 0.99334 0.96897 1.00327 1.21757 0.98071 0.93971 0.94892 0.88562 1.22519 1.02197 0.93388 0.96992 1.22932 1.00373 1.00609 0.98154 1.25069 0.80491 0.88840 0.80575 1.90389 1.58955 1.34487 1.48675 1.22384 1.02173 0.94766 0.97741 0.87974 1.21681 1.02296 1.02068 0.93469 0.92769 0.92826 0.92364 0.90681 0.92953 0.92582 0.92363 0.89882 0.91187 0.94301 0.95431 0.92561 0.88634 0.89089 0.89113 0.91184 0.89281 0.87749 0.92160 0.92166 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.15 0.34 -1.08 16 2 C -0.12 -1.46 3.14 -90.62 -0.28 -1.74 16 3 C -0.15 -1.67 7.71 37.16 0.29 -1.38 16 4 C 0.12 1.70 4.91 -4.04 -0.02 1.68 16 5 N -0.59 -11.26 2.18 -175.06 -0.38 -11.64 16 6 C 0.21 5.02 4.36 -5.19 -0.02 5.00 16 7 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 10 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 11 Si 0.87 21.14 27.56 -169.99 -4.69 16.46 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.04 6.41 56.52 0.36 -5.68 16 15 C 0.51 9.35 6.15 -10.98 -0.07 9.28 16 16 O -0.54 -11.99 14.49 5.56 0.08 -11.91 16 17 C -0.15 -1.86 3.38 -27.88 -0.09 -1.96 16 18 C -0.07 -0.80 2.00 -88.90 -0.18 -0.98 16 19 H 0.10 1.30 7.51 -51.93 -0.39 0.91 16 20 C -0.11 -1.26 5.84 -24.69 -0.14 -1.40 16 21 C -0.18 -1.79 6.72 -26.32 -0.18 -1.97 16 22 C 0.37 4.23 7.18 -28.10 -0.20 4.03 16 23 O -0.45 -6.43 17.99 6.00 0.11 -6.32 16 24 C -0.15 -1.53 3.01 -90.73 -0.27 -1.80 16 25 H 0.10 0.92 7.83 -51.93 -0.41 0.52 16 26 C -0.14 -1.33 9.08 37.16 0.34 -1.00 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 5.99 -51.93 -0.31 0.22 16 33 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 34 H 0.08 1.35 8.12 -51.93 -0.42 0.92 16 35 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 36 H 0.04 0.99 6.89 -51.93 -0.36 0.63 16 37 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.10 1.01 4.10 -51.93 -0.21 0.80 16 40 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 41 H 0.09 1.17 7.55 -51.92 -0.39 0.78 16 42 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -32.95 366.31 -7.69 -40.64 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.17 Total: 0.06 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.94 Total: -6.40 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.39 Total: -38.04 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.19 Total: -18.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.69 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.95 -7.69 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793239488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.101 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds