Wall clock time and date at job start Tue Mar 31 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53004 * 109.47035 * 119.99838 * 2 1 3 5 5 N 1.46494 * 109.47156 * 177.96148 * 4 2 1 6 6 C 1.46503 * 120.00082 * 276.58363 * 5 4 2 7 7 C 1.50703 * 109.47210 * 274.46097 * 6 5 4 8 8 H 1.08002 * 119.99802 * 355.37907 * 7 6 5 9 9 C 1.37869 * 120.00089 * 175.37038 * 7 6 5 10 10 N 1.31515 * 120.00270 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99967 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47284 * 89.99617 * 11 9 7 13 13 H 1.48506 * 109.46887 * 209.99812 * 11 9 7 14 14 H 1.48501 * 109.46858 * 329.99135 * 11 9 7 15 15 C 1.34779 * 120.00181 * 96.58219 * 5 4 2 16 16 O 1.21282 * 120.00207 * 184.92462 * 15 5 4 17 17 C 1.50704 * 119.99747 * 4.93092 * 15 5 4 18 18 C 1.53004 * 109.46700 * 186.02572 * 17 15 5 19 19 H 1.09002 * 110.50948 * 307.75087 * 18 17 15 20 20 C 1.54982 * 110.57157 * 70.67143 * 18 17 15 21 21 C 1.54882 * 102.33597 * 155.65049 * 20 18 17 22 22 C 1.51848 * 104.43099 * 322.36970 * 21 20 18 23 23 O 1.20760 * 126.34485 * 203.81133 * 22 21 20 24 24 C 1.51451 * 107.31587 * 23.79323 * 22 21 20 25 25 H 1.08997 * 109.98189 * 240.28851 * 24 22 21 26 26 C 1.53000 * 109.98246 * 118.98998 * 24 22 21 27 27 H 1.09003 * 109.47693 * 299.99947 * 1 2 3 28 28 H 1.09009 * 109.47144 * 60.00167 * 1 2 3 29 29 H 1.09006 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47258 * 239.99756 * 2 1 3 31 31 H 1.08994 * 109.47141 * 304.77546 * 3 2 1 32 32 H 1.09000 * 109.47169 * 64.77748 * 3 2 1 33 33 H 1.08997 * 109.46936 * 184.77399 * 3 2 1 34 34 H 1.09000 * 109.46950 * 57.95802 * 4 2 1 35 35 H 1.08997 * 109.46938 * 297.96221 * 4 2 1 36 36 H 1.08996 * 109.47294 * 154.46542 * 6 5 4 37 37 H 1.09001 * 109.47033 * 34.46103 * 6 5 4 38 38 H 0.97003 * 120.00473 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.46706 * 306.02503 * 17 15 5 40 40 H 1.09002 * 109.46777 * 66.02680 * 17 15 5 41 41 H 1.09008 * 110.82892 * 273.86063 * 20 18 17 42 42 H 1.09000 * 110.83129 * 37.43277 * 20 18 17 43 43 H 1.09001 * 110.44238 * 203.63852 * 21 20 18 44 44 H 1.08993 * 110.55017 * 81.16166 * 21 20 18 45 45 H 1.09003 * 109.47042 * 302.58257 * 26 24 22 46 46 H 1.08997 * 109.47174 * 62.58412 * 26 24 22 47 47 H 1.08999 * 109.46836 * 182.58706 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.7639 1.2250 6 6 4.1939 -1.8124 0.4692 7 6 4.3277 -3.0444 1.3267 8 1 4.0056 -3.0226 2.3573 9 6 4.8612 -4.1994 0.7955 10 7 4.9785 -5.2745 1.5439 11 14 5.4188 -4.2370 -0.9870 12 1 6.8463 -3.8358 -1.0677 13 1 5.2594 -5.6113 -1.5266 14 1 4.5936 -3.2937 -1.7837 15 6 4.2165 0.1613 1.8979 16 8 5.4257 0.1805 1.8060 17 6 3.5106 1.1720 2.7648 18 6 4.5248 2.1898 3.2906 19 1 5.3652 1.6819 3.7638 20 6 5.0160 3.1108 2.1450 21 6 5.4692 4.3785 2.9108 22 6 4.4505 4.5310 4.0265 23 8 4.1691 5.5536 4.6039 24 6 3.8523 3.1631 4.2808 25 1 2.7767 3.1885 4.1059 26 6 4.1384 2.7264 5.7190 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6084 1.9804 -0.8441 32 1 1.7482 1.9310 0.9297 33 1 3.1265 1.4437 -0.0855 34 1 1.6470 -1.7378 1.2678 35 1 1.7067 -0.1867 2.1388 36 1 5.1846 -1.4608 0.1814 37 1 3.6196 -2.0530 -0.4254 38 1 5.3542 -6.0870 1.1703 39 1 2.7505 1.6867 2.1772 40 1 3.0377 0.6630 3.6047 41 1 5.8540 2.6575 1.6154 42 1 4.2020 3.3429 1.4582 43 1 5.4474 5.2481 2.2540 44 1 6.4681 4.2393 3.3238 45 1 5.2147 2.7262 5.8913 46 1 3.6598 3.4193 6.4111 47 1 3.7446 1.7228 5.8791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793239488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:07 Heat of formation + Delta-G solvation = -118.124704 kcal Electronic energy + Delta-G solvation = -25224.588611 eV Core-core repulsion = 21791.687422 eV Total energy + Delta-G solvation = -3432.901189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42489 -40.51854 -37.96898 -37.42358 -35.40455 -34.13534 -32.46875 -32.00219 -29.92663 -28.00527 -26.97168 -26.12743 -25.55850 -23.94947 -21.62255 -21.38888 -20.06390 -19.56610 -19.04926 -18.01889 -17.32632 -16.81408 -16.73624 -16.45629 -15.91919 -15.59799 -15.42819 -14.90160 -14.81156 -14.53286 -14.42341 -14.31142 -14.05341 -13.80808 -13.52498 -13.39141 -13.19928 -13.01231 -12.85834 -12.73227 -12.57411 -12.47358 -12.25773 -12.18952 -11.94603 -11.84769 -11.76439 -11.69151 -11.61501 -11.52539 -11.28134 -10.82831 -10.58381 -10.30269 -9.28580 -8.33499 -6.37938 0.91144 1.32550 1.35607 1.43965 1.90049 2.30589 2.37109 3.01298 3.13528 3.44147 3.62129 3.80042 3.94802 4.00848 4.08195 4.22825 4.26379 4.33452 4.36262 4.46327 4.51267 4.51507 4.61315 4.73286 4.78584 4.82931 4.87160 4.90156 4.95000 4.96782 5.04612 5.05772 5.06688 5.12794 5.13496 5.23516 5.28956 5.32576 5.41601 5.47291 5.51811 5.54430 5.71557 6.26126 6.48201 6.64009 6.81488 7.23509 7.51480 8.83201 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004451 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.047235 B = 6289.243945 C = 7066.744994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.109 3.891 5 N -0.599 5.599 6 C 0.225 3.775 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.014 3.986 10 N -0.945 5.945 11 Si 0.943 3.057 12 H -0.275 1.275 13 H -0.276 1.276 14 H -0.241 1.241 15 C 0.504 3.496 16 O -0.590 6.590 17 C -0.134 4.134 18 C -0.067 4.067 19 H 0.073 0.927 20 C -0.111 4.111 21 C -0.177 4.177 22 C 0.380 3.620 23 O -0.482 6.482 24 C -0.142 4.142 25 H 0.124 0.876 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.019 0.981 37 H 0.039 0.961 38 H 0.268 0.732 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 18.238 -0.513 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.204 4.204 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.103 3.897 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.184 4.184 10 N -0.585 5.585 11 Si 0.766 3.234 12 H -0.201 1.201 13 H -0.201 1.201 14 H -0.164 1.164 15 C 0.294 3.706 16 O -0.471 6.471 17 C -0.173 4.173 18 C -0.086 4.086 19 H 0.091 0.909 20 C -0.148 4.148 21 C -0.215 4.215 22 C 0.258 3.742 23 O -0.357 6.357 24 C -0.160 4.160 25 H 0.142 0.858 26 C -0.197 4.197 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.373 18.587 -0.262 20.388 hybrid contribution 0.798 -1.139 -0.540 1.492 sum -7.575 17.448 -0.802 19.038 Atomic orbital electron populations 1.21727 0.92537 1.02169 1.03091 1.21501 0.97366 0.96847 0.97509 1.21988 1.00106 0.95245 1.03039 1.21838 0.78360 1.01543 0.99584 1.47932 1.07525 1.27746 1.49662 1.19223 0.93119 0.85595 0.91805 1.21578 1.41484 0.96062 0.98082 0.95033 1.25788 0.95082 0.94834 1.02740 1.70043 1.46743 1.02994 1.38704 0.85784 0.79453 0.78332 0.79819 1.20077 1.20145 1.16448 1.21239 0.87368 0.81966 0.80014 1.90615 1.16374 1.74595 1.65562 1.22055 0.99597 0.95713 0.99941 1.21673 0.97311 0.94050 0.95520 0.90878 1.22464 1.01904 0.93545 0.96924 1.22909 1.00248 1.00490 0.97830 1.25228 0.80138 0.88672 0.80155 1.90391 1.59990 1.35489 1.49828 1.22305 1.03109 0.93359 0.97258 0.85782 1.21701 1.02142 1.02512 0.93310 0.90843 0.91477 0.92954 0.92919 0.91256 0.90370 0.94617 0.91906 0.88009 0.96262 0.94272 0.92325 0.85660 0.87522 0.91449 0.89646 0.87859 0.87222 0.92680 0.91695 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 2 C -0.11 -2.53 3.14 -10.79 -0.03 -2.57 16 3 C -0.15 -2.77 7.71 71.98 0.56 -2.22 16 4 C 0.11 3.08 4.91 86.38 0.42 3.51 16 5 N -0.60 -22.77 2.18 -826.15 -1.80 -24.57 16 6 C 0.23 10.74 4.36 85.63 0.37 11.11 16 7 C -0.53 -30.74 9.94 25.60 0.25 -30.49 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.01 0.79 5.47 84.65 0.46 1.26 16 10 N -0.94 -58.97 13.96 21.44 0.30 -58.67 16 11 Si 0.94 44.01 27.56 68.60 1.89 45.90 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.24 -10.20 6.41 99.48 0.64 -9.56 16 15 C 0.50 18.28 6.15 87.66 0.54 18.82 16 16 O -0.59 -26.69 14.49 -3.04 -0.04 -26.74 16 17 C -0.13 -3.11 3.38 29.85 0.10 -3.01 16 18 C -0.07 -1.46 2.00 -9.68 -0.02 -1.48 16 19 H 0.07 1.98 7.51 -2.39 -0.02 1.96 16 20 C -0.11 -2.29 5.84 31.92 0.19 -2.10 16 21 C -0.18 -3.15 6.72 30.86 0.21 -2.94 16 22 C 0.38 7.77 7.18 29.71 0.21 7.99 16 23 O -0.48 -12.81 17.99 -1.45 -0.03 -12.84 16 24 C -0.14 -2.49 3.01 -10.87 -0.03 -2.53 16 25 H 0.12 1.71 7.83 -2.39 -0.02 1.70 16 26 C -0.14 -2.44 9.08 71.98 0.65 -1.79 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 1.42 7.99 -2.39 -0.02 1.40 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.11 5.99 -2.39 -0.01 1.09 16 33 H 0.03 0.84 6.97 -2.39 -0.02 0.83 16 34 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.10 2.18 6.27 -2.39 -0.01 2.17 16 36 H 0.02 1.00 6.89 -2.39 -0.02 0.98 16 37 H 0.04 1.77 6.68 -2.39 -0.02 1.76 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.13 2.15 4.10 -2.39 -0.01 2.14 16 40 H 0.11 2.21 7.90 -2.39 -0.02 2.19 16 41 H 0.07 1.74 7.55 -2.38 -0.02 1.72 16 42 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.35 366.31 5.73 -69.62 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.86 Total: 15.32 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.55 Total: -8.04 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -1.50 Total: -83.23 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.07 Total: -39.57 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.89 Total: 45.90 kcal Total: -75.35 5.73 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793239488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.501 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds