Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 C 1.53003 * 109.47130 * 120.00397 * 2 1 3 5 5 N 1.46497 * 109.47112 * 174.99891 * 4 2 1 6 6 C 1.46497 * 120.00160 * 90.00073 * 5 4 2 7 7 C 1.50694 * 109.47115 * 89.99794 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 6 12 12 H 1.48498 * 109.46909 * 90.00086 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.46867 * 330.00101 * 11 9 7 15 15 C 1.34785 * 119.99671 * 269.99898 * 5 4 2 16 16 O 1.21282 * 119.99816 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99994 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.46545 * 180.02562 * 17 15 5 19 19 H 1.08990 * 110.51209 * 54.30518 * 18 17 15 20 20 C 1.54989 * 110.57047 * 291.54156 * 18 17 15 21 21 C 1.54886 * 102.33392 * 204.35358 * 20 18 17 22 22 C 1.51832 * 104.43475 * 37.62731 * 21 20 18 23 23 O 1.20762 * 126.34479 * 156.22580 * 22 21 20 24 24 C 1.51690 * 107.34728 * 336.08424 * 22 21 20 25 25 H 1.08995 * 110.13401 * 241.19422 * 24 22 21 26 26 C 1.52999 * 109.96061 * 119.81245 * 24 22 21 27 27 H 1.09002 * 109.46856 * 299.99628 * 1 2 3 28 28 H 1.09001 * 109.47104 * 59.99866 * 1 2 3 29 29 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46856 * 240.00372 * 2 1 3 31 31 H 1.09008 * 109.46868 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47735 * 300.00050 * 3 2 1 33 33 H 1.09002 * 109.46949 * 60.00428 * 3 2 1 34 34 H 1.09001 * 109.46699 * 54.99691 * 4 2 1 35 35 H 1.09003 * 109.46971 * 295.00254 * 4 2 1 36 36 H 1.08998 * 109.46734 * 329.99911 * 6 5 4 37 37 H 1.09002 * 109.47081 * 209.99682 * 6 5 4 38 38 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.47364 * 299.99941 * 17 15 5 40 40 H 1.09003 * 109.46828 * 60.00533 * 17 15 5 41 41 H 1.08999 * 110.83690 * 322.57040 * 20 18 17 42 42 H 1.09006 * 110.82465 * 85.94421 * 20 18 17 43 43 H 1.09000 * 110.44305 * 156.36961 * 21 20 18 44 44 H 1.09005 * 110.44359 * 278.76401 * 21 20 18 45 45 H 1.09007 * 109.46972 * 302.75430 * 26 24 22 46 46 H 1.09001 * 109.46947 * 62.75087 * 26 24 22 47 47 H 1.08994 * 109.47570 * 182.75362 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3343 0.2338 1.7613 7 6 4.6221 -0.0770 3.2074 8 1 4.2237 -0.9748 3.6565 9 6 5.3949 0.7844 3.9572 10 7 5.8804 1.8774 3.4103 11 14 5.7452 0.4029 5.7520 12 1 6.9878 -0.4038 5.8532 13 1 5.9165 1.6723 6.5034 14 1 4.6097 -0.3628 6.3260 15 6 4.0757 -1.8989 0.6114 16 8 5.2844 -1.9862 0.5632 17 6 3.2174 -2.9899 0.0249 18 6 4.1128 -4.0816 -0.5646 19 1 4.8202 -4.4402 0.1830 20 6 4.8618 -3.5553 -1.8152 21 6 5.1624 -4.8599 -2.5942 22 6 3.9277 -5.7184 -2.3853 23 8 3.5483 -6.6130 -3.1024 24 6 3.2602 -5.2474 -1.1072 25 1 3.2305 -6.0577 -0.3788 26 6 1.8408 -4.7616 -1.4076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6053 -1.7199 1.2950 35 1 1.7516 -0.1585 2.1370 36 1 3.8091 1.1864 1.6919 37 1 5.2722 0.2950 1.2092 38 1 6.4243 2.4832 3.9376 39 1 2.5896 -3.4180 0.8062 40 1 2.5867 -2.5733 -0.7606 41 1 4.2230 -2.8932 -2.3996 42 1 5.7841 -3.0491 -1.5300 43 1 5.3031 -4.6467 -3.6538 44 1 6.0446 -5.3526 -2.1855 45 1 1.8788 -3.9676 -2.1534 46 1 1.2462 -5.5912 -1.7901 47 1 1.3863 -4.3799 -0.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793239489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = -101.439956 kcal Electronic energy + Delta-G solvation = -25195.522476 eV Core-core repulsion = 21763.344792 eV Total energy + Delta-G solvation = -3432.177684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34738 -39.10004 -36.96060 -36.13410 -33.54904 -32.35171 -31.69879 -30.24250 -27.73171 -26.84586 -25.62194 -25.15089 -24.76029 -22.56594 -20.49990 -20.10002 -18.89176 -18.18389 -16.78395 -16.53575 -16.05169 -15.79679 -15.26786 -14.96038 -14.70402 -14.51992 -14.24370 -13.73770 -13.46562 -13.27532 -13.16523 -12.76908 -12.61670 -12.32785 -12.26983 -12.07816 -12.01409 -11.83144 -11.55750 -11.41909 -11.29437 -11.03119 -10.95231 -10.87997 -10.70302 -10.61659 -10.56058 -10.34984 -10.26156 -10.11977 -9.58210 -9.45857 -8.81124 -8.42380 -7.61032 -6.04523 -4.08692 1.82362 3.30120 3.36128 3.37383 3.46468 3.89651 4.01838 4.40075 4.45293 4.65221 4.77646 5.02645 5.03836 5.10751 5.14928 5.17841 5.28764 5.28999 5.31464 5.42318 5.52938 5.57754 5.60965 5.68586 5.76660 5.79909 5.83542 5.86248 5.90373 5.99946 6.01938 6.09264 6.15393 6.17936 6.29505 6.33745 6.40615 6.55031 6.68070 7.11450 7.38600 7.45305 7.57605 7.92369 8.25060 8.45934 8.91054 9.12794 9.56380 11.03261 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004529 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.333679 B = 6180.573827 C = 7299.109073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.149 4.149 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.504 3.496 16 O -0.541 6.541 17 C -0.135 4.135 18 C -0.067 4.067 19 H 0.092 0.908 20 C -0.111 4.111 21 C -0.184 4.184 22 C 0.375 3.625 23 O -0.453 6.453 24 C -0.152 4.152 25 H 0.101 0.899 26 C -0.139 4.139 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 -8.288 -9.530 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.206 4.206 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.290 3.710 16 O -0.419 6.419 17 C -0.175 4.175 18 C -0.086 4.086 19 H 0.110 0.890 20 C -0.148 4.148 21 C -0.221 4.221 22 C 0.251 3.749 23 O -0.326 6.326 24 C -0.171 4.171 25 H 0.119 0.881 26 C -0.197 4.197 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.332 -8.611 -9.873 16.085 hybrid contribution 0.190 -0.018 1.200 1.215 sum -9.143 -8.630 -8.673 15.273 Atomic orbital electron populations 1.21786 0.95248 1.01346 1.01781 1.21581 0.95208 0.97628 0.98870 1.21928 1.02664 0.95059 1.00936 1.21530 0.81522 0.99969 0.97878 1.48207 1.05962 1.22137 1.56331 1.19370 0.90564 0.84534 0.93163 1.21452 1.31926 1.07345 0.95657 0.92619 1.24917 0.95563 0.94985 0.98573 1.69928 1.34848 1.11984 1.36640 0.86544 0.78763 0.77627 0.84744 1.20611 1.21194 1.19984 1.20335 0.88705 0.83049 0.78876 1.90646 1.14641 1.78025 1.58562 1.21881 0.98818 0.95550 1.01236 1.21678 0.96236 0.93013 0.97701 0.88983 1.22512 1.02365 0.95117 0.94831 1.22941 0.98479 0.97949 1.02774 1.25154 0.85481 0.79803 0.84511 1.90386 1.66594 1.26790 1.48824 1.22395 0.97203 0.99955 0.97521 0.88104 1.21757 0.93889 1.01444 1.02571 0.92503 0.92884 0.92927 0.91645 0.91247 0.93693 0.92541 0.91752 0.90088 0.94297 0.94142 0.92783 0.89357 0.89225 0.91370 0.88725 0.89290 0.87748 0.92151 0.92307 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.11 -1.44 3.12 -90.62 -0.28 -1.72 16 3 C -0.15 -2.16 8.18 37.16 0.30 -1.85 16 4 C 0.12 1.73 4.70 -4.04 -0.02 1.71 16 5 N -0.60 -11.61 2.28 -175.06 -0.40 -12.01 16 6 C 0.24 6.02 4.23 -5.20 -0.02 6.00 16 7 C -0.52 -14.45 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 11 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.50 9.45 7.47 -10.98 -0.08 9.37 16 16 O -0.54 -12.35 14.23 5.56 0.08 -12.27 16 17 C -0.13 -1.73 2.43 -27.88 -0.07 -1.80 16 18 C -0.07 -0.81 2.40 -88.89 -0.21 -1.02 16 19 H 0.09 1.24 7.96 -51.93 -0.41 0.83 16 20 C -0.11 -1.32 5.73 -24.69 -0.14 -1.46 16 21 C -0.18 -1.90 6.72 -26.33 -0.18 -2.08 16 22 C 0.37 4.36 7.18 -27.99 -0.20 4.16 16 23 O -0.45 -6.57 17.99 6.00 0.11 -6.47 16 24 C -0.15 -1.55 3.38 -90.61 -0.31 -1.86 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -1.26 7.97 37.16 0.30 -0.96 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.81 7.30 -51.93 -0.38 0.44 16 31 H 0.07 1.21 5.90 -51.92 -0.31 0.90 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.04 0.97 5.98 -51.93 -0.31 0.66 16 37 H 0.04 1.15 7.42 -51.93 -0.39 0.76 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.01 6.74 -51.93 -0.35 0.66 16 40 H 0.09 0.99 5.89 -51.93 -0.31 0.68 16 41 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 42 H 0.09 1.34 7.23 -51.93 -0.38 0.97 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.10 366.76 -8.04 -40.14 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.08 Total: -0.33 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.99 Total: -5.77 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.34 Total: -37.34 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.19 Total: -18.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.10 -8.04 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793239489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds