Wall clock time and date at job start Tue Mar 31 2020 07:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47128 * 2 1 4 4 C 1.53003 * 109.47130 * 120.00397 * 2 1 3 5 5 N 1.46497 * 109.47112 * 174.99891 * 4 2 1 6 6 C 1.46497 * 120.00160 * 90.00073 * 5 4 2 7 7 C 1.50694 * 109.47115 * 89.99794 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 6 12 12 H 1.48498 * 109.46909 * 90.00086 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.46867 * 330.00101 * 11 9 7 15 15 C 1.34785 * 119.99671 * 269.99898 * 5 4 2 16 16 O 1.21282 * 119.99816 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99994 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.46545 * 180.02562 * 17 15 5 19 19 H 1.08990 * 110.51209 * 54.30518 * 18 17 15 20 20 C 1.54989 * 110.57047 * 291.54156 * 18 17 15 21 21 C 1.54886 * 102.33392 * 204.35358 * 20 18 17 22 22 C 1.51832 * 104.43475 * 37.62731 * 21 20 18 23 23 O 1.20762 * 126.34479 * 156.22580 * 22 21 20 24 24 C 1.51690 * 107.34728 * 336.08424 * 22 21 20 25 25 H 1.08995 * 110.13401 * 241.19422 * 24 22 21 26 26 C 1.52999 * 109.96061 * 119.81245 * 24 22 21 27 27 H 1.09002 * 109.46856 * 299.99628 * 1 2 3 28 28 H 1.09001 * 109.47104 * 59.99866 * 1 2 3 29 29 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46856 * 240.00372 * 2 1 3 31 31 H 1.09008 * 109.46868 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47735 * 300.00050 * 3 2 1 33 33 H 1.09002 * 109.46949 * 60.00428 * 3 2 1 34 34 H 1.09001 * 109.46699 * 54.99691 * 4 2 1 35 35 H 1.09003 * 109.46971 * 295.00254 * 4 2 1 36 36 H 1.08998 * 109.46734 * 329.99911 * 6 5 4 37 37 H 1.09002 * 109.47081 * 209.99682 * 6 5 4 38 38 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.47364 * 299.99941 * 17 15 5 40 40 H 1.09003 * 109.46828 * 60.00533 * 17 15 5 41 41 H 1.08999 * 110.83690 * 322.57040 * 20 18 17 42 42 H 1.09006 * 110.82465 * 85.94421 * 20 18 17 43 43 H 1.09000 * 110.44305 * 156.36961 * 21 20 18 44 44 H 1.09005 * 110.44359 * 278.76401 * 21 20 18 45 45 H 1.09007 * 109.46972 * 302.75430 * 26 24 22 46 46 H 1.09001 * 109.46947 * 62.75087 * 26 24 22 47 47 H 1.08994 * 109.47570 * 182.75362 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3343 0.2338 1.7613 7 6 4.6221 -0.0770 3.2074 8 1 4.2237 -0.9748 3.6565 9 6 5.3949 0.7844 3.9572 10 7 5.8804 1.8774 3.4103 11 14 5.7452 0.4029 5.7520 12 1 6.9878 -0.4038 5.8532 13 1 5.9165 1.6723 6.5034 14 1 4.6097 -0.3628 6.3260 15 6 4.0757 -1.8989 0.6114 16 8 5.2844 -1.9862 0.5632 17 6 3.2174 -2.9899 0.0249 18 6 4.1128 -4.0816 -0.5646 19 1 4.8202 -4.4402 0.1830 20 6 4.8618 -3.5553 -1.8152 21 6 5.1624 -4.8599 -2.5942 22 6 3.9277 -5.7184 -2.3853 23 8 3.5483 -6.6130 -3.1024 24 6 3.2602 -5.2474 -1.1072 25 1 3.2305 -6.0577 -0.3788 26 6 1.8408 -4.7616 -1.4076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6053 -1.7199 1.2950 35 1 1.7516 -0.1585 2.1370 36 1 3.8091 1.1864 1.6919 37 1 5.2722 0.2950 1.2092 38 1 6.4243 2.4832 3.9376 39 1 2.5896 -3.4180 0.8062 40 1 2.5867 -2.5733 -0.7606 41 1 4.2230 -2.8932 -2.3996 42 1 5.7841 -3.0491 -1.5300 43 1 5.3031 -4.6467 -3.6538 44 1 6.0446 -5.3526 -2.1855 45 1 1.8788 -3.9676 -2.1534 46 1 1.2462 -5.5912 -1.7901 47 1 1.3863 -4.3799 -0.4934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793239489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:10 Heat of formation + Delta-G solvation = -119.642739 kcal Electronic energy + Delta-G solvation = -25196.311808 eV Core-core repulsion = 21763.344792 eV Total energy + Delta-G solvation = -3432.967016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42017 -40.42400 -38.07847 -37.39729 -35.30889 -34.05077 -32.63365 -31.39291 -29.42036 -27.92582 -26.85981 -26.26258 -25.82990 -24.28400 -21.63627 -21.13921 -19.94954 -19.41556 -18.61397 -17.94107 -17.25303 -17.15094 -16.49565 -16.27484 -16.03610 -15.77298 -15.48986 -14.95909 -14.67634 -14.31001 -14.20133 -14.11202 -13.81104 -13.56553 -13.47025 -13.35966 -13.03866 -12.98412 -12.87194 -12.82999 -12.64152 -12.54552 -12.28556 -12.10468 -12.01877 -11.84649 -11.75872 -11.59565 -11.51949 -11.41745 -11.31115 -10.59298 -10.44305 -10.29778 -9.26791 -8.18074 -6.32184 0.91190 1.37197 1.39620 1.49041 1.99495 2.35605 2.53162 3.11058 3.13545 3.47041 3.66762 3.84004 3.96643 4.07068 4.10829 4.21011 4.27605 4.30170 4.38673 4.53388 4.60432 4.62928 4.70378 4.76409 4.83673 4.88034 4.89690 4.94553 4.99304 5.06789 5.11246 5.11452 5.14676 5.20907 5.27018 5.29948 5.35716 5.39653 5.44832 5.50716 5.55529 5.65800 5.96313 6.14567 6.48079 6.76922 6.94620 7.34171 7.63969 8.87906 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004529 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.333679 B = 6180.573827 C = 7299.109073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.148 4.148 4 C 0.110 3.890 5 N -0.601 5.601 6 C 0.262 3.738 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.962 3.038 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.262 1.262 15 C 0.493 3.507 16 O -0.592 6.592 17 C -0.120 4.120 18 C -0.066 4.066 19 H 0.073 0.927 20 C -0.110 4.110 21 C -0.179 4.179 22 C 0.380 3.620 23 O -0.482 6.482 24 C -0.141 4.141 25 H 0.114 0.886 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.031 0.969 37 H -0.009 1.009 38 H 0.265 0.735 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 -9.837 -9.499 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.205 4.205 4 C -0.013 4.013 5 N -0.331 5.331 6 C 0.140 3.860 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.787 3.213 12 H -0.208 1.208 13 H -0.203 1.203 14 H -0.186 1.186 15 C 0.282 3.718 16 O -0.474 6.474 17 C -0.159 4.159 18 C -0.085 4.085 19 H 0.092 0.908 20 C -0.148 4.148 21 C -0.216 4.216 22 C 0.258 3.742 23 O -0.358 6.358 24 C -0.159 4.159 25 H 0.132 0.868 26 C -0.199 4.199 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.009 0.991 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.099 -10.165 -9.846 18.619 hybrid contribution 1.084 0.513 1.155 1.665 sum -11.014 -9.653 -8.691 17.030 Atomic orbital electron populations 1.21737 0.92301 1.03135 1.02280 1.21531 0.97426 0.95655 0.97896 1.21899 1.00042 0.97143 1.01452 1.21840 0.78617 1.02283 0.98518 1.48201 1.07635 1.21186 1.56105 1.18762 0.89394 0.86160 0.91645 1.21780 1.31954 1.07087 0.96983 0.92988 1.25803 0.95337 0.94807 1.03126 1.70053 1.35515 1.12963 1.38366 0.85504 0.78638 0.77755 0.79450 1.20795 1.20259 1.18585 1.21443 0.88797 0.83576 0.77934 1.90626 1.17308 1.79075 1.60350 1.21903 0.98173 0.93434 1.02420 1.21606 0.96196 0.93493 0.97191 0.90842 1.22431 1.01254 0.95770 0.95329 1.22915 0.98507 0.96951 1.03243 1.25322 0.85394 0.79009 0.84508 1.90386 1.67342 1.28122 1.49920 1.22309 0.97595 0.99255 0.96791 0.86849 1.21821 0.92588 1.01777 1.03670 0.92776 0.91709 0.90486 0.90670 0.95216 0.91668 0.93534 0.87921 0.91705 0.95119 0.99123 0.92620 0.86680 0.86335 0.90490 0.91743 0.88265 0.87061 0.91702 0.92091 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.11 -2.44 3.12 -10.79 -0.03 -2.48 16 3 C -0.15 -4.29 8.18 71.98 0.59 -3.70 16 4 C 0.11 3.11 4.70 86.38 0.41 3.51 16 5 N -0.60 -23.67 2.28 -826.16 -1.88 -25.56 16 6 C 0.26 13.67 4.23 85.63 0.36 14.03 16 7 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.01 0.45 5.46 84.66 0.46 0.92 16 10 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 11 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 15 C 0.49 18.51 7.47 87.66 0.66 19.17 16 16 O -0.59 -28.28 14.23 -3.03 -0.04 -28.32 16 17 C -0.12 -2.76 2.43 29.85 0.07 -2.69 16 18 C -0.07 -1.48 2.40 -9.68 -0.02 -1.50 16 19 H 0.07 1.95 7.96 -2.39 -0.02 1.93 16 20 C -0.11 -2.57 5.73 31.92 0.18 -2.38 16 21 C -0.18 -3.50 6.72 30.85 0.21 -3.29 16 22 C 0.38 8.09 7.18 29.78 0.21 8.31 16 23 O -0.48 -13.19 17.99 -1.45 -0.03 -13.22 16 24 C -0.14 -2.47 3.38 -10.79 -0.04 -2.50 16 25 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 26 C -0.14 -1.95 7.97 71.98 0.57 -1.37 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.63 7.30 -2.39 -0.02 1.61 16 31 H 0.03 1.08 5.90 -2.38 -0.01 1.06 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 35 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.03 1.64 5.98 -2.39 -0.01 1.62 16 37 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.12 2.11 6.74 -2.39 -0.02 2.09 16 40 H 0.12 2.10 5.89 -2.39 -0.01 2.08 16 41 H 0.08 1.63 7.99 -2.39 -0.02 1.61 16 42 H 0.06 1.92 7.23 -2.38 -0.02 1.90 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.06 0.85 7.65 -2.38 -0.02 0.84 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 0.93 6.58 -2.39 -0.02 0.92 16 Total: -1.00 -74.32 366.76 5.83 -68.49 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.94 Total: 13.46 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.53 Total: -5.84 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.60 Total: -81.23 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.07 Total: -41.54 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.32 5.83 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793239489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.152 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds