Wall clock time and date at job start Tue Mar 31 2020 07:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.53001 * 109.47334 * 120.00087 * 2 1 3 5 5 N 1.46498 * 109.46925 * 65.96886 * 4 2 1 6 6 C 1.46501 * 119.99800 * 82.50293 * 5 4 2 7 7 C 1.50705 * 109.46982 * 89.99760 * 6 5 4 8 8 H 1.07997 * 119.99698 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99807 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00079 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99849 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46903 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47440 * 59.99557 * 11 9 7 14 14 H 1.48504 * 109.46977 * 299.99232 * 11 9 7 15 15 C 1.34773 * 120.00079 * 262.50134 * 5 4 2 16 16 O 1.21280 * 120.00094 * 184.45088 * 15 5 4 17 17 C 1.50703 * 119.99941 * 4.45246 * 15 5 4 18 18 C 1.53000 * 109.46917 * 187.06635 * 17 15 5 19 19 H 1.08998 * 110.51218 * 303.70451 * 18 17 15 20 20 C 1.54990 * 110.56711 * 66.45836 * 18 17 15 21 21 C 1.54896 * 102.33393 * 155.65066 * 20 18 17 22 22 C 1.51847 * 104.42967 * 322.37461 * 21 20 18 23 23 O 1.20758 * 126.33615 * 203.77025 * 22 21 20 24 24 C 1.51447 * 107.32080 * 23.78913 * 22 21 20 25 25 H 1.08997 * 109.98163 * 118.99242 * 24 22 21 26 26 C 1.52993 * 109.98447 * 240.29527 * 24 22 21 27 27 H 1.09000 * 109.47067 * 296.03086 * 1 2 3 28 28 H 1.09001 * 109.47170 * 56.02797 * 1 2 3 29 29 H 1.08995 * 109.47175 * 176.02806 * 1 2 3 30 30 H 1.09002 * 109.47142 * 240.00318 * 2 1 3 31 31 H 1.09008 * 109.46947 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47269 * 299.99720 * 3 2 1 33 33 H 1.09000 * 109.47424 * 59.99967 * 3 2 1 34 34 H 1.09000 * 109.46905 * 305.97281 * 4 2 1 35 35 H 1.08998 * 109.47157 * 185.97613 * 4 2 1 36 36 H 1.09001 * 109.47189 * 329.99759 * 6 5 4 37 37 H 1.09001 * 109.46870 * 209.99581 * 6 5 4 38 38 H 0.97004 * 120.00332 * 0.02562 * 10 9 7 39 39 H 1.08998 * 109.47459 * 307.06997 * 17 15 5 40 40 H 1.09000 * 109.47030 * 67.07266 * 17 15 5 41 41 H 1.08997 * 110.83188 * 273.85823 * 20 18 17 42 42 H 1.08993 * 110.83371 * 37.44046 * 20 18 17 43 43 H 1.08997 * 110.44349 * 81.10774 * 21 20 18 44 44 H 1.09002 * 110.43997 * 203.63833 * 21 20 18 45 45 H 1.09008 * 109.47239 * 177.41263 * 26 24 22 46 46 H 1.08993 * 109.47438 * 297.41432 * 26 24 22 47 47 H 1.09005 * 109.47267 * 57.41973 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6725 -2.1377 1.1795 6 6 2.4987 -3.0718 0.4107 7 6 3.5647 -3.6521 1.3041 8 1 3.6213 -3.3544 2.3407 9 6 4.4683 -4.5621 0.7977 10 7 4.3996 -4.9241 -0.4647 11 14 5.7892 -5.2819 1.9053 12 1 6.6267 -6.2287 1.1259 13 1 5.1493 -6.0023 3.0352 14 1 6.6413 -4.1872 2.4352 15 6 0.5744 -2.5814 1.8227 16 8 0.3145 -3.7660 1.8324 17 6 -0.3305 -1.6056 2.5298 18 6 -1.3923 -2.3744 3.3187 19 1 -1.9487 -3.0416 2.6604 20 6 -0.7395 -3.1715 4.4765 21 6 -1.9133 -3.3253 5.4754 22 6 -2.6585 -2.0051 5.3897 23 8 -3.3692 -1.5280 6.2415 24 6 -2.3460 -1.3979 4.0379 25 1 -3.2634 -1.2805 3.4612 26 6 -1.6647 -0.0401 4.2196 27 1 -0.3633 0.4510 0.9234 28 1 -0.3633 0.5742 -0.8523 29 1 -0.3633 -1.0251 -0.0712 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5920 -0.2729 2.1360 35 1 3.1248 -0.6295 1.3043 36 1 2.9681 -2.5435 -0.4192 37 1 1.8730 -3.8754 0.0224 38 1 3.7135 -4.5506 -1.0398 39 1 0.2581 -0.9938 3.2134 40 1 -0.8174 -0.9638 1.7954 41 1 -0.3950 -4.1459 4.1302 42 1 0.0783 -2.6063 4.9234 43 1 -2.5620 -4.1487 5.1767 44 1 -1.5353 -3.4842 6.4854 45 1 -1.4023 0.3683 3.2435 46 1 -2.3452 0.6428 4.7280 47 1 -0.7610 -0.1639 4.8164 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793239492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:14 Heat of formation + Delta-G solvation = -100.457572 kcal Electronic energy + Delta-G solvation = -25375.905688 eV Core-core repulsion = 21943.770603 eV Total energy + Delta-G solvation = -3432.135085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42943 -39.22854 -36.94584 -36.24506 -33.90936 -32.40812 -31.74949 -30.29467 -27.30400 -27.14337 -25.81542 -25.14168 -24.54175 -22.72052 -20.53974 -20.24850 -18.99510 -18.16506 -17.10657 -16.76675 -16.21023 -15.77925 -15.33578 -15.01159 -14.84888 -14.49158 -14.01164 -13.72082 -13.52763 -13.35327 -13.14679 -12.94310 -12.80311 -12.50812 -12.46426 -12.15837 -12.03914 -11.83032 -11.67800 -11.42488 -11.36738 -11.16026 -10.98512 -10.88274 -10.76314 -10.65039 -10.58541 -10.37574 -10.34341 -10.10984 -9.48000 -9.11331 -8.90411 -8.38851 -7.61432 -6.38329 -4.10117 1.80760 3.35840 3.42261 3.46058 3.63163 3.80349 4.00191 4.37666 4.53324 4.62506 4.73323 4.93453 5.00507 5.02413 5.04716 5.14298 5.22730 5.28497 5.33842 5.38899 5.45262 5.50362 5.54245 5.61347 5.63639 5.70912 5.74060 5.80044 5.86241 5.88749 5.95799 5.97475 6.00482 6.08994 6.18130 6.33217 6.34878 6.38266 6.44856 6.82305 7.11778 7.37084 7.41435 8.04399 8.30968 8.43766 8.77850 9.03597 9.59346 10.98827 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.005026 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.398851 B = 5569.448510 C = 7090.150502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.238 3.762 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.020 3.980 10 N -0.910 5.910 11 Si 1.070 2.930 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.289 1.289 15 C 0.506 3.494 16 O -0.540 6.540 17 C -0.148 4.148 18 C -0.067 4.067 19 H 0.091 0.909 20 C -0.113 4.113 21 C -0.184 4.184 22 C 0.375 3.625 23 O -0.452 6.452 24 C -0.151 4.151 25 H 0.101 0.899 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.019 0.981 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 12.127 5.506 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.323 5.323 6 C 0.119 3.881 7 C -0.641 4.641 8 H 0.068 0.932 9 C -0.184 4.184 10 N -0.547 5.547 11 Si 0.898 3.102 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.215 1.215 15 C 0.292 3.708 16 O -0.417 6.417 17 C -0.188 4.188 18 C -0.086 4.086 19 H 0.110 0.890 20 C -0.150 4.150 21 C -0.221 4.221 22 C 0.251 3.749 23 O -0.325 6.325 24 C -0.170 4.170 25 H 0.119 0.881 26 C -0.197 4.197 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.611 10.688 5.978 15.567 hybrid contribution -1.148 1.109 -0.136 1.602 sum -10.758 11.797 5.842 17.001 Atomic orbital electron populations 1.22050 0.95730 1.01733 1.01159 1.21565 0.95843 0.96150 1.00074 1.21764 1.01259 0.95590 1.01440 1.21553 1.01111 0.81592 0.96594 1.48003 1.25515 1.08356 1.50436 1.19267 0.89810 0.87964 0.91108 1.22223 1.15444 1.28531 0.97918 0.93160 1.25772 0.99921 0.94631 0.98123 1.70807 1.35134 1.43215 1.05499 0.83531 0.75530 0.76339 0.74814 1.20707 1.21442 1.21511 1.20332 0.81641 0.89161 0.79618 1.90653 1.73260 1.17245 1.60582 1.22233 0.97253 0.98901 1.00402 1.21682 0.95038 0.95615 0.96290 0.89035 1.22529 0.95816 1.02685 0.93993 1.22952 0.99320 0.97662 1.02197 1.25087 0.75819 0.87168 0.86850 1.90386 1.31515 1.66250 1.44384 1.22336 1.00928 0.97286 0.96468 0.88132 1.21765 1.00657 0.94527 1.02760 0.92537 0.92924 0.92418 0.90649 0.92444 0.92791 0.92803 0.91321 0.90360 0.96298 0.95157 0.92291 0.89303 0.88070 0.88780 0.91225 0.87768 0.89194 0.91051 0.92210 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 7.39 37.16 0.27 -1.42 16 2 C -0.12 -1.50 3.10 -90.62 -0.28 -1.78 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C 0.12 1.76 4.88 -4.04 -0.02 1.74 16 5 N -0.59 -11.70 2.25 -175.06 -0.39 -12.10 16 6 C 0.24 5.97 4.45 -5.19 -0.02 5.95 16 7 C -0.60 -16.84 9.39 -34.44 -0.32 -17.16 16 8 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 10 N -0.91 -27.44 13.65 55.43 0.76 -26.69 16 11 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.51 9.57 6.42 -10.99 -0.07 9.50 16 16 O -0.54 -12.50 14.42 5.56 0.08 -12.42 16 17 C -0.15 -1.92 2.33 -27.88 -0.07 -1.99 16 18 C -0.07 -0.82 2.42 -88.90 -0.21 -1.03 16 19 H 0.09 1.20 7.93 -51.93 -0.41 0.79 16 20 C -0.11 -1.45 5.71 -24.68 -0.14 -1.59 16 21 C -0.18 -2.00 6.72 -26.32 -0.18 -2.18 16 22 C 0.38 4.44 7.18 -28.10 -0.20 4.24 16 23 O -0.45 -6.63 17.99 6.00 0.11 -6.52 16 24 C -0.15 -1.54 3.36 -90.74 -0.30 -1.85 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 26 C -0.14 -1.27 7.95 37.15 0.30 -0.97 16 27 H 0.06 0.53 6.69 -51.93 -0.35 0.18 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.76 6.47 -51.93 -0.34 0.43 16 30 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.86 6.00 -51.93 -0.31 0.55 16 35 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 36 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 37 H 0.03 0.86 7.35 -51.93 -0.38 0.47 16 38 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 39 H 0.09 1.03 5.40 -51.93 -0.28 0.75 16 40 H 0.10 1.12 3.72 -51.93 -0.19 0.93 16 41 H 0.09 1.45 7.32 -51.93 -0.38 1.07 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.56 6.63 -51.92 -0.34 0.21 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.56 7.63 -51.93 -0.40 0.17 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -33.25 362.61 -7.99 -41.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.92 Total: -0.04 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.01 Total: -9.19 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.36 Total: -38.78 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.19 Total: -18.94 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.25 -7.99 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793239492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.213 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds