Wall clock time and date at job start Tue Mar 31 2020 07:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20759 * 119.99827 * 2 1 4 4 C 1.50698 * 120.00363 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47506 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47385 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46843 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47290 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47261 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31509 * 119.99919 * 355.42076 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46774 * 299.99437 * 1 2 3 27 27 H 1.08999 * 109.47688 * 59.99468 * 1 2 3 28 28 H 1.09001 * 109.46874 * 59.98996 * 4 2 1 29 29 H 1.09002 * 109.46687 * 299.99675 * 4 2 1 30 30 H 1.08993 * 109.47161 * 59.99576 * 5 4 2 31 31 H 1.09002 * 109.46977 * 299.99613 * 5 4 2 32 32 H 1.09003 * 109.47128 * 59.99661 * 6 5 4 33 33 H 1.09002 * 109.46797 * 299.99785 * 6 5 4 34 34 H 1.08993 * 109.47039 * 59.99875 * 7 6 5 35 35 H 1.08996 * 109.46990 * 299.99986 * 7 6 5 36 36 H 1.09003 * 109.47117 * 60.00150 * 8 7 6 37 37 H 1.09002 * 109.47083 * 300.00105 * 8 7 6 38 38 H 1.09003 * 109.46759 * 60.00126 * 9 8 7 39 39 H 1.08998 * 109.47657 * 300.00517 * 9 8 7 40 40 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 41 41 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 42 42 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 43 43 H 0.97004 * 120.00506 * 184.99920 * 18 17 15 44 44 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 45 45 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 46 46 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 47 47 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0340 -2.0708 -0.0022 8 6 6.7990 -3.3958 -0.0015 9 6 8.3032 -3.1163 -0.0033 10 6 9.0567 -4.4214 -0.0020 11 8 8.4504 -5.4717 -0.0003 12 7 10.4045 -4.4214 -0.0027 13 6 11.1370 -5.6901 -0.0020 14 6 12.6370 -5.4129 0.1175 15 6 13.2579 -4.6840 -1.0462 16 1 13.3725 -3.6106 -1.0120 17 6 13.6850 -5.3881 -2.1521 18 7 13.6337 -6.7021 -2.1551 19 14 14.3365 -4.4754 -3.6461 20 1 14.2908 -3.0130 -3.3915 21 1 15.7390 -4.8885 -3.9058 22 1 13.4980 -4.7988 -4.8282 23 6 13.1922 -5.1191 1.5126 24 6 13.4936 -6.4582 0.8347 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9971 -1.8763 -0.8908 29 1 1.9972 -1.8769 0.8892 30 1 4.0284 -0.4541 0.8888 31 1 4.0277 -0.4538 -0.8911 32 1 4.2662 -2.9223 -0.8908 33 1 4.2667 -2.9218 0.8892 34 1 6.2979 -1.4989 0.8873 35 1 6.2967 -1.4997 -0.8926 36 1 6.5351 -3.9682 -0.8909 37 1 6.5362 -3.9666 0.8891 38 1 8.5674 -2.5438 0.8858 39 1 8.5658 -2.5457 -0.8941 40 1 10.8895 -3.5813 -0.0045 41 1 10.9392 -6.2244 -0.9312 42 1 10.8113 -6.2972 0.8427 43 1 14.0006 -7.2002 -2.9023 44 1 14.0066 -4.3987 1.5887 45 1 12.4890 -5.1238 2.3454 46 1 12.9886 -7.3431 1.2219 47 1 14.5062 -6.6189 0.4647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797684978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:13 Heat of formation + Delta-G solvation = -95.499979 kcal Electronic energy + Delta-G solvation = -22612.543386 eV Core-core repulsion = 19180.623278 eV Total energy + Delta-G solvation = -3431.920107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85498 -39.12394 -36.81447 -36.22555 -33.48193 -33.24040 -31.96923 -31.15000 -29.25521 -26.65000 -25.51024 -24.47203 -21.81443 -21.16800 -21.05277 -19.82946 -19.65640 -19.15290 -16.64731 -16.47609 -16.07641 -15.97927 -15.71665 -15.34084 -14.90827 -14.87423 -14.62810 -13.96376 -13.72287 -13.35667 -13.17309 -12.89175 -12.74170 -12.66490 -12.49684 -12.39424 -11.83309 -11.65353 -11.58513 -11.41321 -11.02427 -11.02072 -11.01256 -10.94963 -10.85817 -10.52684 -10.52324 -10.24264 -9.93828 -9.59893 -9.22538 -9.03886 -8.50386 -8.25315 -8.07429 -6.08545 -4.18322 1.58378 3.23745 3.25761 3.33059 3.34832 3.63294 3.91703 4.34129 4.48044 4.60591 4.62265 4.85007 4.88649 4.99728 5.02106 5.11111 5.18774 5.20737 5.29926 5.32094 5.42102 5.49579 5.55679 5.61355 5.67301 5.82728 5.87011 5.92376 5.97252 6.05479 6.12860 6.31067 6.34149 6.42950 6.47999 6.57178 6.70273 6.88838 7.11680 7.13487 7.30867 7.39825 7.53116 7.80246 8.32342 8.34102 8.83017 8.92385 9.48823 10.98675 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.002067 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.291600 B =13540.212031 C =14141.690442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.352 3.648 3 O -0.460 6.460 4 C -0.174 4.174 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.102 4.102 9 C -0.141 4.141 10 C 0.501 3.499 11 O -0.561 6.561 12 N -0.706 5.706 13 C 0.163 3.837 14 C 0.022 3.978 15 C -0.499 4.499 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.143 4.143 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.027 10.116 4.781 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.228 3.772 3 O -0.334 6.334 4 C -0.211 4.211 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.158 4.158 8 C -0.140 4.140 9 C -0.182 4.182 10 C 0.287 3.713 11 O -0.441 6.441 12 N -0.354 5.354 13 C 0.040 3.960 14 C 0.021 3.979 15 C -0.536 4.536 16 H 0.079 0.921 17 C -0.132 4.132 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.248 4.248 24 C -0.181 4.181 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.128 9.738 4.632 23.721 hybrid contribution 0.672 0.602 -0.893 1.270 sum -20.456 10.340 3.739 23.224 Atomic orbital electron populations 1.22289 0.94727 1.04609 1.04706 1.24732 0.91913 0.90546 0.70033 1.90424 1.71962 1.35345 1.35691 1.22217 0.97007 0.97202 1.04715 1.21445 0.92496 0.97909 1.03210 1.21602 0.95064 0.96734 1.02303 1.21615 0.94388 0.97645 1.02140 1.21312 0.92479 0.96763 1.03430 1.21676 0.96233 0.96231 1.04011 1.20624 0.82846 0.91146 0.76715 1.90640 1.68454 1.33785 1.51235 1.46040 1.05518 1.11096 1.72789 1.20968 0.91359 0.83576 1.00107 1.19076 0.89367 0.99443 0.89981 1.20386 1.41022 0.93107 0.99105 0.92139 1.25004 0.95153 0.94847 0.98204 1.70000 1.44141 1.05421 1.31505 0.86568 0.78453 0.80080 0.83080 1.19699 1.21038 1.20943 1.23013 1.03656 1.01017 0.97110 1.22466 1.01720 0.90540 1.03347 0.89997 0.89148 0.89132 0.88310 0.88326 0.91496 0.91464 0.91803 0.91839 0.91981 0.91909 0.91326 0.91413 0.89438 0.89226 0.76532 0.91587 0.94311 0.92925 0.90393 0.91752 0.91841 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.82 10.33 36.00 0.37 -0.44 16 2 C 0.35 2.50 7.27 -29.04 -0.21 2.29 16 3 O -0.46 -5.23 16.72 6.00 0.10 -5.13 16 4 C -0.17 -0.99 5.55 -27.89 -0.15 -1.15 16 5 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 6 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 7 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 8 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 9 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 10 C 0.50 9.18 7.83 -10.98 -0.09 9.09 16 11 O -0.56 -12.36 15.98 5.56 0.09 -12.27 16 12 N -0.71 -13.64 5.48 -60.29 -0.33 -13.97 16 13 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 14 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 15 C -0.50 -12.81 8.59 -34.44 -0.30 -13.10 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.87 -24.30 12.65 55.43 0.70 -23.60 16 19 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 25 H 0.08 0.16 8.00 -51.93 -0.42 -0.25 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.40 7.05 8.33 -40.82 -0.34 6.71 16 41 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -31.56 392.99 -9.20 -40.75 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.75 Total: 5.24 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.91 Total: -12.49 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.37 Total: -37.57 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.56 -9.20 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797684978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.747 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds