Wall clock time and date at job start Tue Mar 31 2020 07:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20759 * 119.99827 * 2 1 4 4 C 1.50698 * 120.00363 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47506 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47385 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47118 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46843 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47290 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47261 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00113 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31509 * 119.99919 * 355.42076 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46774 * 299.99437 * 1 2 3 27 27 H 1.08999 * 109.47688 * 59.99468 * 1 2 3 28 28 H 1.09001 * 109.46874 * 59.98996 * 4 2 1 29 29 H 1.09002 * 109.46687 * 299.99675 * 4 2 1 30 30 H 1.08993 * 109.47161 * 59.99576 * 5 4 2 31 31 H 1.09002 * 109.46977 * 299.99613 * 5 4 2 32 32 H 1.09003 * 109.47128 * 59.99661 * 6 5 4 33 33 H 1.09002 * 109.46797 * 299.99785 * 6 5 4 34 34 H 1.08993 * 109.47039 * 59.99875 * 7 6 5 35 35 H 1.08996 * 109.46990 * 299.99986 * 7 6 5 36 36 H 1.09003 * 109.47117 * 60.00150 * 8 7 6 37 37 H 1.09002 * 109.47083 * 300.00105 * 8 7 6 38 38 H 1.09003 * 109.46759 * 60.00126 * 9 8 7 39 39 H 1.08998 * 109.47657 * 300.00517 * 9 8 7 40 40 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 41 41 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 42 42 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 43 43 H 0.97004 * 120.00506 * 184.99920 * 18 17 15 44 44 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 45 45 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 46 46 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 47 47 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0340 -2.0708 -0.0022 8 6 6.7990 -3.3958 -0.0015 9 6 8.3032 -3.1163 -0.0033 10 6 9.0567 -4.4214 -0.0020 11 8 8.4504 -5.4717 -0.0003 12 7 10.4045 -4.4214 -0.0027 13 6 11.1370 -5.6901 -0.0020 14 6 12.6370 -5.4129 0.1175 15 6 13.2579 -4.6840 -1.0462 16 1 13.3725 -3.6106 -1.0120 17 6 13.6850 -5.3881 -2.1521 18 7 13.6337 -6.7021 -2.1551 19 14 14.3365 -4.4754 -3.6461 20 1 14.2908 -3.0130 -3.3915 21 1 15.7390 -4.8885 -3.9058 22 1 13.4980 -4.7988 -4.8282 23 6 13.1922 -5.1191 1.5126 24 6 13.4936 -6.4582 0.8347 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9971 -1.8763 -0.8908 29 1 1.9972 -1.8769 0.8892 30 1 4.0284 -0.4541 0.8888 31 1 4.0277 -0.4538 -0.8911 32 1 4.2662 -2.9223 -0.8908 33 1 4.2667 -2.9218 0.8892 34 1 6.2979 -1.4989 0.8873 35 1 6.2967 -1.4997 -0.8926 36 1 6.5351 -3.9682 -0.8909 37 1 6.5362 -3.9666 0.8891 38 1 8.5674 -2.5438 0.8858 39 1 8.5658 -2.5457 -0.8941 40 1 10.8895 -3.5813 -0.0045 41 1 10.9392 -6.2244 -0.9312 42 1 10.8113 -6.2972 0.8427 43 1 14.0006 -7.2002 -2.9023 44 1 14.0066 -4.3987 1.5887 45 1 12.4890 -5.1238 2.3454 46 1 12.9886 -7.3431 1.2219 47 1 14.5062 -6.6189 0.4647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797684978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:12 Heat of formation + Delta-G solvation = -113.231536 kcal Electronic energy + Delta-G solvation = -22613.312284 eV Core-core repulsion = 19180.623278 eV Total energy + Delta-G solvation = -3432.689006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66563 -40.44757 -38.52685 -37.09024 -34.91066 -34.31052 -33.95458 -31.74086 -30.02805 -28.17904 -27.24295 -25.59886 -22.99918 -22.60467 -21.83061 -21.35434 -20.78531 -20.36739 -18.32776 -17.62893 -17.18363 -16.75533 -16.69120 -16.57156 -16.42544 -15.90933 -15.86962 -15.48513 -14.94227 -14.63133 -14.33946 -13.98169 -13.81372 -13.51092 -13.47867 -13.27837 -13.06165 -12.94893 -12.90954 -12.85808 -12.40199 -12.32916 -12.26494 -12.03356 -11.83048 -11.79451 -11.62762 -11.41675 -11.31779 -10.94898 -10.84286 -10.49326 -10.44689 -10.03113 -9.81639 -8.10083 -6.24318 1.05998 1.40594 1.44476 1.53612 1.79045 2.39834 2.46428 3.17899 3.19089 3.50017 3.86880 3.91731 4.02455 4.07494 4.21588 4.23611 4.33574 4.39940 4.51274 4.55039 4.64304 4.65448 4.66913 4.72834 4.76834 4.79537 4.86471 4.90414 4.99048 5.01058 5.03474 5.10032 5.15943 5.21179 5.25093 5.27777 5.40360 5.50146 5.55514 5.56787 5.62206 5.72054 5.78184 6.36018 6.63254 6.80307 6.85705 7.43384 7.45891 8.97165 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.002067 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.291600 B =13540.212031 C =14141.690442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.352 3.648 3 O -0.513 6.513 4 C -0.173 4.173 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.097 4.097 9 C -0.131 4.131 10 C 0.496 3.504 11 O -0.602 6.602 12 N -0.703 5.703 13 C 0.179 3.821 14 C -0.001 4.001 15 C -0.501 4.501 16 H 0.065 0.935 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.951 3.049 20 H -0.260 1.260 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.176 4.176 24 C -0.155 4.155 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.411 0.589 41 H 0.023 0.977 42 H 0.035 0.965 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.220 11.766 5.361 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.232 3.768 3 O -0.390 6.390 4 C -0.210 4.210 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.135 4.135 9 C -0.171 4.171 10 C 0.285 3.715 11 O -0.485 6.485 12 N -0.353 5.353 13 C 0.055 3.945 14 C -0.002 4.002 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.180 4.180 18 N -0.547 5.547 19 Si 0.777 3.223 20 H -0.183 1.183 21 H -0.211 1.211 22 H -0.215 1.215 23 C -0.213 4.213 24 C -0.193 4.193 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.247 0.753 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.329 11.417 5.223 25.617 hybrid contribution 1.018 0.046 -1.040 1.457 sum -21.311 11.463 4.183 24.557 Atomic orbital electron populations 1.22307 0.92196 1.06451 1.04995 1.25315 0.93459 0.90156 0.67882 1.90415 1.73165 1.37028 1.38426 1.22275 0.95214 0.96963 1.06580 1.21370 0.94214 0.97281 1.01956 1.21563 0.94209 0.96882 1.02662 1.21568 0.94889 0.96037 1.02712 1.21270 0.92230 0.97905 1.02130 1.21734 0.95806 0.93307 1.06242 1.21598 0.82334 0.92600 0.74975 1.90622 1.69084 1.35926 1.52835 1.45967 1.06046 1.10220 1.73033 1.20516 0.91476 0.84868 0.97680 1.19130 0.89548 1.00286 0.91191 1.20698 1.40134 0.93427 0.99647 0.91652 1.25745 0.95885 0.95482 1.00846 1.70125 1.45527 1.06808 1.32200 0.85612 0.77497 0.79547 0.79614 1.18347 1.21056 1.21527 1.22995 1.03332 0.99008 0.95947 1.22387 1.00571 0.91855 1.04535 0.87426 0.88729 0.88799 0.86402 0.86226 0.92657 0.92892 0.91630 0.91287 0.91136 0.91587 0.93042 0.92423 0.86538 0.87341 0.75295 0.95879 0.94658 0.93250 0.89573 0.89405 0.91385 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 10.33 71.23 0.74 -0.44 16 2 C 0.35 4.57 7.27 29.10 0.21 4.78 16 3 O -0.51 -11.67 16.72 -1.45 -0.02 -11.70 16 4 C -0.17 -1.62 5.55 29.85 0.17 -1.45 16 5 C -0.11 -1.61 4.50 30.59 0.14 -1.47 16 6 C -0.12 -1.68 5.21 30.60 0.16 -1.53 16 7 C -0.11 -1.94 5.21 30.59 0.16 -1.78 16 8 C -0.10 -2.22 4.50 30.59 0.14 -2.08 16 9 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 10 C 0.50 17.79 7.83 87.66 0.69 18.47 16 11 O -0.60 -26.75 15.98 -3.01 -0.05 -26.80 16 12 N -0.70 -26.57 5.48 -463.06 -2.54 -29.11 16 13 C 0.18 8.26 5.50 86.38 0.48 8.73 16 14 C 0.00 -0.04 1.47 -52.93 -0.08 -0.12 16 15 C -0.50 -25.50 8.59 25.60 0.22 -25.28 16 16 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 17 C 0.02 1.11 5.43 84.66 0.46 1.57 16 18 N -0.91 -51.59 12.65 21.45 0.27 -51.32 16 19 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.18 -7.02 9.96 30.62 0.30 -6.72 16 24 C -0.16 -7.18 9.14 30.62 0.28 -6.90 16 25 H 0.11 0.07 8.00 -2.39 -0.02 0.05 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.41 13.71 8.33 -92.71 -0.77 12.94 16 41 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 43 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 45 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 47 H 0.06 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -70.03 392.99 4.06 -65.97 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.15 Total: 25.91 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.23 Total: -17.16 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.27 Total: -80.43 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.07 Total: -38.49 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -70.03 4.06 -65.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797684978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.265 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds