Wall clock time and date at job start Tue Mar 31 2020 08:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00150 * 2 1 4 4 N 1.46500 * 109.47154 * 122.90071 * 3 2 1 5 5 C 1.46495 * 119.99740 * 276.66920 * 4 3 2 6 6 C 1.50696 * 109.47469 * 270.00186 * 5 4 3 7 7 H 1.08004 * 119.99935 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00341 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99652 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00082 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47007 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46824 * 119.99754 * 10 8 6 13 13 H 1.48497 * 109.47324 * 239.99862 * 10 8 6 14 14 C 1.34777 * 119.99665 * 96.67272 * 4 3 2 15 15 O 1.21284 * 119.99487 * 185.61217 * 14 4 3 16 16 C 1.50687 * 120.00464 * 5.61122 * 14 4 3 17 17 O 1.42908 * 108.79519 * 181.26707 * 16 14 4 18 18 C 1.42904 * 113.99480 * 295.05130 * 17 16 14 19 19 C 1.45545 * 108.89524 * 299.81947 * 16 14 4 20 20 C 1.54246 * 112.32643 * 182.73680 * 19 16 14 21 21 C 1.50548 * 108.48511 * 279.88416 * 20 19 16 22 22 C 1.54066 * 112.41501 * 94.26800 * 21 20 19 23 23 C 1.54063 * 112.81679 * 318.27656 * 22 21 20 24 24 C 1.50472 * 112.49721 * 318.29075 * 23 22 21 25 25 H 1.07997 * 120.00455 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.99748 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99704 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47389 * 2.89528 * 3 2 1 29 29 H 1.09005 * 109.47010 * 242.89869 * 3 2 1 30 30 H 1.09006 * 109.47194 * 30.00228 * 5 4 3 31 31 H 1.09005 * 109.47093 * 150.00246 * 5 4 3 32 32 H 0.97005 * 119.99970 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47110 * 66.67023 * 18 17 16 34 34 H 1.09000 * 109.47026 * 186.67364 * 18 17 16 35 35 H 1.08996 * 109.46837 * 306.67052 * 18 17 16 36 36 H 1.08996 * 108.89683 * 303.44019 * 19 16 14 37 37 H 1.09000 * 108.89384 * 62.03681 * 19 16 14 38 38 H 1.08996 * 109.62868 * 39.68663 * 20 19 16 39 39 H 1.09001 * 109.62565 * 160.25755 * 20 19 16 40 40 H 1.09002 * 108.92269 * 333.51173 * 21 20 19 41 41 H 1.09000 * 108.83765 * 214.96610 * 21 20 19 42 42 H 1.08999 * 108.80992 * 197.41739 * 22 21 20 43 43 H 1.09006 * 108.81174 * 79.14048 * 22 21 20 44 44 H 1.08994 * 108.87803 * 197.50437 * 23 22 21 45 45 H 1.09008 * 108.87338 * 79.06567 * 23 22 21 46 46 H 1.09004 * 109.62459 * 334.43556 * 24 23 22 47 47 H 1.09005 * 109.78584 * 213.95710 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9574 1.3528 1.1597 5 6 2.4417 1.7721 2.4652 6 6 2.5888 3.2651 2.6076 7 1 3.0234 3.8438 1.8059 8 6 2.1695 3.8923 3.7617 9 7 1.6408 3.1875 4.7380 10 14 2.3525 5.7429 3.9384 11 1 2.9713 6.2988 2.7082 12 1 1.0148 6.3556 4.1394 13 1 3.2163 6.0455 5.1078 14 6 4.2542 1.0111 1.0254 15 8 4.9701 0.9522 2.0027 16 6 4.8147 0.7022 -0.3389 17 8 6.1910 0.3431 -0.2007 18 6 7.0237 1.4038 0.2725 19 6 4.0878 -0.4255 -0.9028 20 6 4.6439 -0.8533 -2.2765 21 6 4.0986 0.0805 -3.3239 22 6 5.0552 1.2506 -3.6231 23 6 5.6957 1.8388 -2.3513 24 6 4.7140 1.9655 -1.2180 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3564 2.1330 0.0519 29 1 2.6506 1.3856 -0.9149 30 1 1.3887 1.5016 2.5438 31 1 3.0046 1.2746 3.2550 32 1 1.3461 3.6287 5.5502 33 1 6.7518 1.6486 1.2992 34 1 8.0669 1.0898 0.2378 35 1 6.8873 2.2818 -0.3587 36 1 4.1567 -1.2690 -0.2159 37 1 3.0398 -0.1485 -1.0170 38 1 5.7323 -0.7972 -2.2644 39 1 4.3295 -1.8734 -2.4972 40 1 3.1466 0.4829 -2.9777 41 1 3.9302 -0.4811 -4.2428 42 1 4.4993 2.0375 -4.1329 43 1 5.8466 0.8974 -4.2843 44 1 6.0968 2.8255 -2.5825 45 1 6.5150 1.1918 -2.0376 46 1 3.7035 2.0543 -1.6171 47 1 4.9507 2.8466 -0.6215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820231176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:59 Heat of formation + Delta-G solvation = -40.370043 kcal Electronic energy + Delta-G solvation = -26597.962034 eV Core-core repulsion = 23168.432540 eV Total energy + Delta-G solvation = -3429.529494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16374 -37.83182 -36.65160 -35.20468 -33.30319 -32.41930 -32.23877 -31.24791 -27.62127 -26.72739 -25.68155 -24.88098 -24.67265 -22.59352 -20.72541 -20.14743 -19.24939 -18.62271 -16.96829 -16.53113 -16.31719 -15.60810 -15.37895 -15.15250 -14.66311 -14.58590 -14.19016 -13.97944 -13.62068 -13.35841 -13.03135 -12.80335 -12.58685 -12.40666 -12.20265 -12.02798 -11.80888 -11.36160 -11.28086 -11.06891 -11.05914 -10.90053 -10.65211 -10.62104 -10.57430 -10.37063 -10.29561 -10.21221 -10.16308 -9.86964 -9.63304 -9.15695 -8.45787 -8.33363 -7.68837 -6.06281 -4.11384 2.41494 3.27070 3.31786 3.35607 3.39638 3.89595 4.05073 4.41624 4.67674 4.68467 4.83698 5.02118 5.05813 5.18616 5.24577 5.27031 5.28427 5.32847 5.40331 5.48343 5.52975 5.65924 5.75337 5.78627 5.86698 5.93078 5.98679 6.03398 6.11665 6.15085 6.16966 6.21177 6.23413 6.30276 6.35528 6.45783 6.52144 6.78708 6.90714 7.06426 7.37349 7.45798 7.54426 7.90412 8.21651 8.38569 8.87155 9.04966 9.53718 11.01764 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005725 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.804509 B = 4889.702027 C = 5539.923360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.112 3.888 4 N -0.587 5.587 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.486 3.514 15 O -0.531 6.531 16 C 0.115 3.885 17 O -0.357 6.357 18 C 0.011 3.989 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.145 4.145 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -5.664 -17.320 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.196 4.196 3 C -0.011 4.011 4 N -0.319 5.319 5 C 0.126 3.874 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.272 3.728 15 O -0.408 6.408 16 C 0.072 3.928 17 O -0.275 6.275 18 C -0.085 4.085 19 C -0.177 4.177 20 C -0.148 4.148 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.164 4.164 24 C -0.182 4.182 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.370 -5.844 -16.628 17.945 hybrid contribution -0.115 1.341 0.437 1.415 sum 3.255 -4.503 -16.191 17.118 Atomic orbital electron populations 1.23861 0.95842 1.01831 0.99827 1.23543 0.96445 0.99126 1.00524 1.21187 0.94204 0.95393 0.90312 1.48195 1.07762 1.64322 1.11572 1.19279 0.94637 0.94978 0.78464 1.21456 1.40815 0.92387 1.01893 0.92479 1.24933 0.95108 0.98483 0.95530 1.69948 1.41368 1.35562 1.06265 0.86472 0.77722 0.85235 0.78167 1.19829 1.20929 1.20866 1.21202 0.82868 0.77815 0.90935 1.90619 1.57939 1.52147 1.40068 1.20160 0.84068 0.96011 0.92597 1.87940 1.16309 1.37440 1.85826 1.23027 0.93983 0.90505 1.00973 1.21249 1.01343 0.97457 0.97699 1.21228 1.02041 0.98262 0.93245 1.21407 0.99059 0.96458 0.98909 1.21889 0.98644 0.97380 0.97193 1.21410 0.99496 1.01225 0.94318 1.22075 1.01539 0.97450 0.97157 0.88665 0.88260 0.87110 0.89748 0.88808 0.94928 0.93845 0.92766 0.91032 0.90476 0.94037 0.91160 0.87412 0.90524 0.91971 0.92110 0.92389 0.92573 0.92437 0.92345 0.89846 0.89468 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 29.01 0.42 -1.87 16 2 C -0.18 -2.53 8.27 -36.03 -0.30 -2.83 16 3 C 0.11 1.82 5.10 -5.19 -0.03 1.79 16 4 N -0.59 -12.38 2.44 -176.44 -0.43 -12.81 16 5 C 0.25 6.44 5.22 -5.20 -0.03 6.41 16 6 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.49 10.31 6.02 -10.99 -0.07 10.24 16 15 O -0.53 -13.56 13.70 -14.71 -0.20 -13.76 16 16 C 0.11 1.86 0.33 -94.65 -0.03 1.82 16 17 O -0.36 -6.01 7.76 -55.49 -0.43 -6.44 16 18 C 0.01 0.18 9.42 101.05 0.95 1.13 16 19 C -0.14 -1.92 3.14 -29.59 -0.09 -2.02 16 20 C -0.11 -1.22 5.57 -27.30 -0.15 -1.37 16 21 C -0.12 -1.16 5.32 -27.40 -0.15 -1.30 16 22 C -0.11 -1.09 5.85 -25.62 -0.15 -1.24 16 23 C -0.13 -1.47 4.14 -27.44 -0.11 -1.58 16 24 C -0.14 -2.03 3.45 -27.35 -0.09 -2.12 16 25 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 26 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 27 H 0.11 1.51 6.68 -52.49 -0.35 1.16 16 28 H 0.08 1.41 7.77 -51.93 -0.40 1.01 16 29 H 0.09 1.29 2.23 -51.93 -0.12 1.18 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.39 5.87 -51.93 -0.30 1.08 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.59 5.38 -51.93 -0.28 0.31 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.11 1.37 1.89 -51.93 -0.10 1.28 16 38 H 0.08 0.92 6.23 -51.93 -0.32 0.60 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.58 6.33 -51.93 -0.33 0.25 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.04 4.74 -51.92 -0.25 0.79 16 46 H 0.09 1.12 4.40 -51.93 -0.23 0.89 16 47 H 0.07 1.18 7.30 -51.93 -0.38 0.80 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -32.31 342.28 -7.64 -39.95 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.20 Total: 3.40 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.25 Total: -6.39 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.60 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.63 Total: -20.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.31 -7.64 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820231176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.422 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds