Wall clock time and date at job start Tue Mar 31 2020 08:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00150 * 2 1 4 4 N 1.46500 * 109.47154 * 122.90071 * 3 2 1 5 5 C 1.46495 * 119.99740 * 276.66920 * 4 3 2 6 6 C 1.50696 * 109.47469 * 270.00186 * 5 4 3 7 7 H 1.08004 * 119.99935 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00341 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99652 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00082 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47007 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46824 * 119.99754 * 10 8 6 13 13 H 1.48497 * 109.47324 * 239.99862 * 10 8 6 14 14 C 1.34777 * 119.99665 * 96.67272 * 4 3 2 15 15 O 1.21284 * 119.99487 * 185.61217 * 14 4 3 16 16 C 1.50687 * 120.00464 * 5.61122 * 14 4 3 17 17 O 1.42908 * 108.79519 * 181.26707 * 16 14 4 18 18 C 1.42904 * 113.99480 * 295.05130 * 17 16 14 19 19 C 1.45545 * 108.89524 * 299.81947 * 16 14 4 20 20 C 1.54246 * 112.32643 * 182.73680 * 19 16 14 21 21 C 1.50548 * 108.48511 * 279.88416 * 20 19 16 22 22 C 1.54066 * 112.41501 * 94.26800 * 21 20 19 23 23 C 1.54063 * 112.81679 * 318.27656 * 22 21 20 24 24 C 1.50472 * 112.49721 * 318.29075 * 23 22 21 25 25 H 1.07997 * 120.00455 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.99748 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99704 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47389 * 2.89528 * 3 2 1 29 29 H 1.09005 * 109.47010 * 242.89869 * 3 2 1 30 30 H 1.09006 * 109.47194 * 30.00228 * 5 4 3 31 31 H 1.09005 * 109.47093 * 150.00246 * 5 4 3 32 32 H 0.97005 * 119.99970 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47110 * 66.67023 * 18 17 16 34 34 H 1.09000 * 109.47026 * 186.67364 * 18 17 16 35 35 H 1.08996 * 109.46837 * 306.67052 * 18 17 16 36 36 H 1.08996 * 108.89683 * 303.44019 * 19 16 14 37 37 H 1.09000 * 108.89384 * 62.03681 * 19 16 14 38 38 H 1.08996 * 109.62868 * 39.68663 * 20 19 16 39 39 H 1.09001 * 109.62565 * 160.25755 * 20 19 16 40 40 H 1.09002 * 108.92269 * 333.51173 * 21 20 19 41 41 H 1.09000 * 108.83765 * 214.96610 * 21 20 19 42 42 H 1.08999 * 108.80992 * 197.41739 * 22 21 20 43 43 H 1.09006 * 108.81174 * 79.14048 * 22 21 20 44 44 H 1.08994 * 108.87803 * 197.50437 * 23 22 21 45 45 H 1.09008 * 108.87338 * 79.06567 * 23 22 21 46 46 H 1.09004 * 109.62459 * 334.43556 * 24 23 22 47 47 H 1.09005 * 109.78584 * 213.95710 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9574 1.3528 1.1597 5 6 2.4417 1.7721 2.4652 6 6 2.5888 3.2651 2.6076 7 1 3.0234 3.8438 1.8059 8 6 2.1695 3.8923 3.7617 9 7 1.6408 3.1875 4.7380 10 14 2.3525 5.7429 3.9384 11 1 2.9713 6.2988 2.7082 12 1 1.0148 6.3556 4.1394 13 1 3.2163 6.0455 5.1078 14 6 4.2542 1.0111 1.0254 15 8 4.9701 0.9522 2.0027 16 6 4.8147 0.7022 -0.3389 17 8 6.1910 0.3431 -0.2007 18 6 7.0237 1.4038 0.2725 19 6 4.0878 -0.4255 -0.9028 20 6 4.6439 -0.8533 -2.2765 21 6 4.0986 0.0805 -3.3239 22 6 5.0552 1.2506 -3.6231 23 6 5.6957 1.8388 -2.3513 24 6 4.7140 1.9655 -1.2180 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3564 2.1330 0.0519 29 1 2.6506 1.3856 -0.9149 30 1 1.3887 1.5016 2.5438 31 1 3.0046 1.2746 3.2550 32 1 1.3461 3.6287 5.5502 33 1 6.7518 1.6486 1.2992 34 1 8.0669 1.0898 0.2378 35 1 6.8873 2.2818 -0.3587 36 1 4.1567 -1.2690 -0.2159 37 1 3.0398 -0.1485 -1.0170 38 1 5.7323 -0.7972 -2.2644 39 1 4.3295 -1.8734 -2.4972 40 1 3.1466 0.4829 -2.9777 41 1 3.9302 -0.4811 -4.2428 42 1 4.4993 2.0375 -4.1329 43 1 5.8466 0.8974 -4.2843 44 1 6.0968 2.8255 -2.5825 45 1 6.5150 1.1918 -2.0376 46 1 3.7035 2.0543 -1.6171 47 1 4.9507 2.8466 -0.6215 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820231176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:58 Heat of formation + Delta-G solvation = -59.404058 kcal Electronic energy + Delta-G solvation = -26598.787411 eV Core-core repulsion = 23168.432540 eV Total energy + Delta-G solvation = -3430.354871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.51961 -39.32878 -38.03463 -36.51891 -35.21744 -33.79808 -33.46396 -32.52288 -29.51281 -27.94138 -27.09393 -26.28586 -25.71604 -24.38919 -21.93849 -21.42199 -20.29457 -19.92273 -18.64819 -18.35672 -17.78179 -16.96212 -16.80293 -16.35480 -16.34611 -15.97651 -15.68230 -15.07402 -14.96285 -14.63917 -14.30705 -14.15665 -13.94754 -13.84562 -13.52534 -13.35656 -13.15498 -12.98611 -12.87534 -12.66262 -12.52649 -12.29553 -12.26929 -12.15457 -11.79630 -11.70139 -11.51598 -11.36565 -11.21433 -11.13152 -11.05460 -10.68053 -10.32035 -9.93360 -9.50179 -8.25202 -6.40456 1.26013 1.33933 1.36164 1.47804 1.70085 2.28397 2.41524 2.74597 3.04477 3.43960 3.55962 3.72671 3.98183 4.10790 4.12843 4.20665 4.21738 4.28388 4.35661 4.39964 4.45225 4.53580 4.60701 4.71870 4.79542 4.88445 4.94907 4.95709 5.02094 5.05104 5.07719 5.15262 5.19565 5.27158 5.34934 5.37541 5.45087 5.48814 5.52624 5.67202 5.68596 5.73016 5.91589 6.02292 6.05976 6.65107 6.71777 7.23054 7.38856 8.82433 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.005725 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.804509 B = 4889.702027 C = 5539.923360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.198 4.198 3 C 0.110 3.890 4 N -0.589 5.589 5 C 0.263 3.737 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.265 1.265 12 H -0.268 1.268 13 H -0.282 1.282 14 C 0.472 3.528 15 O -0.587 6.587 16 C 0.127 3.873 17 O -0.363 6.363 18 C 0.013 3.987 19 C -0.142 4.142 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.022 0.978 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.029 0.971 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -5.165 -20.592 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.216 4.216 3 C -0.011 4.011 4 N -0.320 5.320 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.193 1.193 13 H -0.208 1.208 14 C 0.261 3.739 15 O -0.468 6.468 16 C 0.084 3.916 17 O -0.281 6.281 18 C -0.083 4.083 19 C -0.179 4.179 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.177 4.177 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.040 0.960 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.857 -5.356 -19.954 20.857 hybrid contribution 0.011 1.136 1.513 1.892 sum 2.868 -4.220 -18.442 19.135 Atomic orbital electron populations 1.24113 0.95385 1.03100 0.96971 1.23424 0.96956 0.98222 1.03034 1.21453 0.93878 0.96575 0.89238 1.48171 1.08731 1.63856 1.11215 1.18697 0.93067 0.93963 0.80071 1.21700 1.40910 0.93195 1.02198 0.92685 1.25870 0.94496 1.03699 0.95020 1.70070 1.42048 1.37763 1.06849 0.85370 0.78289 0.78983 0.78202 1.18893 1.19297 1.20842 1.22366 0.82360 0.76508 0.92702 1.90589 1.59225 1.54483 1.42490 1.20241 0.83701 0.98110 0.89529 1.87938 1.16586 1.38100 1.85466 1.23033 0.95217 0.91271 0.98764 1.21324 1.01770 0.95716 0.99065 1.21205 1.01413 0.99719 0.91624 1.21433 0.98909 0.96336 0.99268 1.21890 0.99170 0.97734 0.96054 1.21393 0.98550 1.01990 0.94221 1.22061 1.03307 0.94995 0.97309 0.86230 0.88135 0.86440 0.90342 0.86193 0.96010 0.98924 0.92404 0.95223 0.87778 0.92357 0.92974 0.86345 0.91368 0.90222 0.91884 0.90149 0.91247 0.91100 0.91218 0.90655 0.88027 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.20 -5.44 8.27 25.65 0.21 -5.23 16 3 C 0.11 3.53 5.10 85.63 0.44 3.97 16 4 N -0.59 -25.91 2.44 -830.51 -2.03 -27.93 16 5 C 0.26 14.62 5.22 85.63 0.45 15.06 16 6 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 10 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 C 0.47 21.03 6.02 87.65 0.53 21.56 16 15 O -0.59 -32.25 13.70 16.33 0.22 -32.02 16 16 C 0.13 4.12 0.33 -13.40 0.00 4.12 16 17 O -0.36 -12.30 7.76 -129.61 -1.01 -13.31 16 18 C 0.01 0.42 9.42 113.37 1.07 1.49 16 19 C -0.14 -3.75 3.14 28.74 0.09 -3.66 16 20 C -0.10 -1.98 5.57 30.22 0.17 -1.81 16 21 C -0.12 -1.86 5.32 30.16 0.16 -1.70 16 22 C -0.11 -1.70 5.85 31.31 0.18 -1.52 16 23 C -0.12 -2.56 4.14 30.14 0.12 -2.43 16 24 C -0.14 -3.75 3.45 30.19 0.10 -3.64 16 25 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 26 H 0.10 2.40 7.84 -2.91 -0.02 2.38 16 27 H 0.12 3.09 6.68 -2.91 -0.02 3.07 16 28 H 0.08 2.61 7.77 -2.39 -0.02 2.59 16 29 H 0.12 3.14 2.23 -2.38 -0.01 3.14 16 30 H 0.02 1.23 8.07 -2.38 -0.02 1.22 16 31 H -0.01 -0.48 7.35 -2.38 -0.02 -0.50 16 32 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 33 H 0.03 1.22 5.87 -2.39 -0.01 1.20 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 1.66 5.38 -2.39 -0.01 1.65 16 36 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 37 H 0.12 2.84 1.89 -2.39 0.00 2.84 16 38 H 0.07 1.47 6.23 -2.39 -0.01 1.45 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 0.95 6.33 -2.39 -0.02 0.93 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.71 4.74 -2.38 -0.01 1.70 16 46 H 0.10 2.39 4.40 -2.39 -0.01 2.38 16 47 H 0.05 1.60 7.30 -2.38 -0.02 1.58 16 Total: -1.00 -74.77 342.28 5.66 -69.11 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.96 Total: 20.51 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.19 Total: -6.90 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.74 Total: -84.40 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.78 Total: -45.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.77 5.66 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820231176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.707 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds