Wall clock time and date at job start Tue Mar 31 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47019 * 2 1 4 4 C 1.53005 * 109.46609 * 240.00376 * 2 1 3 5 5 C 1.53000 * 109.47354 * 299.99713 * 4 2 1 6 6 C 1.53001 * 109.47217 * 300.00380 * 5 4 2 7 7 C 1.53005 * 109.47269 * 59.99568 * 6 5 4 8 8 C 1.52991 * 109.47334 * 120.00497 * 2 1 3 9 9 H 1.09007 * 109.47493 * 179.97438 * 8 2 1 10 10 C 1.50708 * 109.47194 * 299.99590 * 8 2 1 11 11 O 1.20824 * 119.99346 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00029 * 180.02562 * 10 8 2 13 13 C 1.45203 * 117.00016 * 180.02562 * 12 10 8 14 14 C 1.53038 * 109.45670 * 270.06708 * 13 12 10 15 15 C 1.53198 * 109.31101 * 178.61219 * 14 13 12 16 16 N 1.46924 * 108.77276 * 54.63394 * 15 14 13 17 17 C 1.36939 * 120.62822 * 126.41454 * 16 15 14 18 18 H 1.08000 * 120.00004 * 332.60516 * 17 16 15 19 19 C 1.38820 * 119.99847 * 152.60265 * 17 16 15 20 20 N 1.31614 * 119.99583 * 159.36172 * 19 17 16 21 21 Si 1.86796 * 119.99922 * 339.36545 * 19 17 16 22 22 H 1.48504 * 109.47273 * 92.91065 * 21 19 17 23 23 H 1.48505 * 109.46754 * 212.90793 * 21 19 17 24 24 H 1.48503 * 109.47304 * 332.90488 * 21 19 17 25 25 C 1.46931 * 118.73974 * 306.39168 * 16 15 14 26 26 C 1.53040 * 109.45941 * 149.99667 * 13 12 10 27 27 H 1.09002 * 109.47652 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47186 * 299.99467 * 1 2 3 29 29 H 1.08998 * 109.47875 * 59.99619 * 1 2 3 30 30 H 1.08995 * 109.47463 * 59.99677 * 4 2 1 31 31 H 1.09006 * 109.46945 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47046 * 60.00121 * 5 4 2 33 33 H 1.08998 * 109.47678 * 180.02562 * 5 4 2 34 34 H 1.08995 * 109.47456 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47414 * 300.00250 * 6 5 4 36 36 H 1.09006 * 109.46945 * 60.00289 * 7 6 5 37 37 H 1.08995 * 109.47463 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.45783 * 30.02633 * 13 12 10 39 39 H 1.08996 * 109.50169 * 298.56466 * 14 13 12 40 40 H 1.09003 * 109.49743 * 58.66576 * 14 13 12 41 41 H 1.08997 * 109.58547 * 294.84990 * 15 14 13 42 42 H 1.08993 * 109.58862 * 174.42197 * 15 14 13 43 43 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58690 * 293.81990 * 25 16 15 45 45 H 1.09003 * 109.58274 * 173.39921 * 25 16 15 46 46 H 1.08999 * 109.50237 * 301.33513 * 26 13 12 47 47 H 1.09002 * 109.49518 * 61.40805 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8851 -0.0003 7 6 1.5300 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2491 9 1 3.1301 -0.7217 1.2489 10 6 1.5378 -0.0109 2.4797 11 8 0.8428 0.9712 2.3688 12 8 1.8625 -0.4693 3.6987 13 6 1.3429 0.2645 4.8389 14 6 2.3374 1.3572 5.2380 15 6 1.7703 2.1514 6.4190 16 7 1.4356 1.2156 7.5010 17 6 1.9316 1.4028 8.7636 18 1 2.8691 1.9200 8.9043 19 6 1.2292 0.9277 9.8627 20 7 1.8505 0.7322 11.0064 21 14 -0.5977 0.5659 9.7184 22 1 -0.7930 -0.8635 9.3662 23 1 -1.2628 0.8514 11.0152 24 1 -1.1898 1.4221 8.6594 25 6 0.5582 0.0754 7.2027 26 6 1.1388 -0.6956 6.0131 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7208 -1.2497 32 1 0.4398 -2.1637 -1.2494 33 1 1.8935 -2.6777 -2.1392 34 1 1.6763 -3.9126 0.0000 35 1 3.1299 -2.8850 -0.0002 36 1 0.4400 -2.1638 1.2492 37 1 1.8937 -2.6774 2.1390 38 1 0.3895 0.7209 4.5731 39 1 3.2834 0.9000 5.5278 40 1 2.5000 2.0271 4.3937 41 1 0.8721 2.6826 6.1044 42 1 2.5152 2.8652 6.7706 43 1 1.3598 0.3999 11.7743 44 1 -0.4389 0.4373 6.9521 45 1 0.5034 -0.5806 8.0716 46 1 0.4485 -1.4867 5.7205 47 1 2.0961 -1.1339 6.2953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820308605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:51 Heat of formation + Delta-G solvation = -88.101408 kcal Electronic energy + Delta-G solvation = -25131.146965 eV Core-core repulsion = 21699.547684 eV Total energy + Delta-G solvation = -3431.599281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95450 -39.00761 -37.51911 -35.97464 -32.76324 -32.12661 -31.57166 -30.58319 -30.33905 -27.34078 -25.32000 -23.90039 -22.95814 -22.58639 -21.91649 -20.68796 -19.63908 -18.77772 -17.54649 -17.06320 -16.46768 -16.09366 -15.48395 -15.03703 -14.66496 -14.36183 -14.20523 -13.86319 -13.82825 -13.34850 -13.27509 -13.16746 -12.83044 -12.72821 -12.43209 -12.05889 -11.95558 -11.86939 -11.75964 -11.45192 -11.36468 -11.05399 -10.94518 -10.87585 -10.76979 -10.51451 -10.47373 -10.30205 -10.20321 -9.96418 -9.83951 -9.70748 -9.41771 -8.67320 -7.04755 -5.97746 -3.34378 2.30546 2.80778 3.29243 3.46897 3.49740 4.28074 4.37814 4.45931 4.50097 4.83318 4.85320 4.89116 4.97215 5.02354 5.07027 5.13114 5.13682 5.20813 5.34455 5.36463 5.41841 5.52901 5.55182 5.69491 5.71404 5.75047 5.75773 5.78551 5.83126 5.97107 5.99323 6.01706 6.09642 6.11550 6.17809 6.24803 6.31211 6.36226 6.52981 6.56394 6.63824 6.74720 6.94534 7.91376 7.93098 8.29798 8.89421 9.68084 10.04701 11.18105 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.003342 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.753132 B = 8376.916750 C = 8512.865403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.075 4.075 9 H 0.105 0.895 10 C 0.461 3.539 11 O -0.506 6.506 12 O -0.354 6.354 13 C 0.098 3.902 14 C -0.147 4.147 15 C 0.152 3.848 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.087 0.913 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.129 3.871 26 C -0.129 4.129 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -6.225 -24.594 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.093 4.093 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.095 4.095 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.394 6.394 12 O -0.271 6.271 13 C 0.044 3.956 14 C -0.187 4.187 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.105 0.895 19 C -0.175 4.175 20 N -0.549 5.549 21 Si 0.711 3.289 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.195 1.195 25 C 0.003 3.997 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.488 -5.943 -24.375 25.094 hybrid contribution -1.043 -0.122 0.093 1.054 sum -1.530 -6.066 -24.282 25.075 Atomic orbital electron populations 1.22181 0.94596 1.01925 1.03374 1.20943 0.97011 0.99125 0.92207 0.90462 1.21577 1.00598 0.95665 0.97240 1.21618 1.01290 0.95545 0.97738 1.21524 1.00995 0.98939 0.93954 1.21569 1.01572 0.92727 0.99279 1.21115 1.02331 0.96169 0.89842 0.87700 1.23647 0.77560 0.82902 0.85447 1.90580 1.35604 1.26144 1.87093 1.86556 1.69501 1.56020 1.14990 1.22839 0.97706 0.92812 0.82287 1.22454 0.99497 0.97258 0.99476 1.20881 0.97822 0.91525 0.87169 1.44429 1.57022 1.24250 1.07260 1.18933 1.03232 1.36267 0.80555 0.89518 1.25283 0.97817 0.99336 0.95071 1.69833 1.35540 1.47273 1.02293 0.86986 0.87892 0.77685 0.76384 1.21496 1.22973 1.19499 1.21372 0.92795 0.89891 0.95650 1.22226 1.02716 0.97676 0.94204 0.92618 0.90169 0.92924 0.91531 0.91819 0.91494 0.91997 0.91513 0.91641 0.91096 0.90398 0.90340 0.90916 0.92265 0.95587 0.91145 0.92691 0.95411 0.90068 0.91976 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.18 37.16 0.30 -1.36 16 2 C -0.07 -0.70 2.36 -90.62 -0.21 -0.92 16 3 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 4 C -0.11 -0.81 5.45 -26.73 -0.15 -0.96 16 5 C -0.12 -0.83 5.65 -26.73 -0.15 -0.98 16 6 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 7 C -0.11 -1.02 4.86 -26.73 -0.13 -1.15 16 8 C -0.08 -0.77 2.41 -91.77 -0.22 -0.99 16 9 H 0.11 0.96 8.14 -51.92 -0.42 0.53 16 10 C 0.46 6.53 6.94 36.01 0.25 6.78 16 11 O -0.51 -8.30 12.88 -18.75 -0.24 -8.54 16 12 O -0.35 -5.53 9.78 -39.24 -0.38 -5.92 16 13 C 0.10 1.70 2.41 -26.69 -0.06 1.63 16 14 C -0.15 -2.62 5.72 -26.61 -0.15 -2.77 16 15 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 16 N -0.61 -14.54 2.77 -172.32 -0.48 -15.02 16 17 C -0.26 -7.32 10.04 -15.06 -0.15 -7.47 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 19 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 20 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 21 Si 0.88 22.27 24.34 -169.99 -4.14 18.14 16 22 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.27 -6.74 6.64 56.52 0.38 -6.37 16 25 C 0.13 2.83 4.20 -3.71 -0.02 2.81 16 26 C -0.13 -2.36 5.74 -26.61 -0.15 -2.51 16 27 H 0.05 0.51 4.81 -51.93 -0.25 0.26 16 28 H 0.08 1.03 5.52 -51.92 -0.29 0.74 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 37 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.08 1.43 7.16 -51.93 -0.37 1.06 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.60 7.07 -51.93 -0.37 0.24 16 45 H 0.08 1.92 4.50 -51.93 -0.23 1.69 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -30.81 345.86 -8.49 -39.30 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.12 Total: -1.03 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.12 Total: -5.19 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.30 Total: -41.97 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.63 Total: -14.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.81 -8.49 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820308605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.805 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds