Wall clock time and date at job start Tue Mar 31 2020 07:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47019 * 2 1 4 4 C 1.53005 * 109.46609 * 240.00376 * 2 1 3 5 5 C 1.53000 * 109.47354 * 299.99713 * 4 2 1 6 6 C 1.53001 * 109.47217 * 300.00380 * 5 4 2 7 7 C 1.53005 * 109.47269 * 59.99568 * 6 5 4 8 8 C 1.52991 * 109.47334 * 120.00497 * 2 1 3 9 9 H 1.09007 * 109.47493 * 179.97438 * 8 2 1 10 10 C 1.50708 * 109.47194 * 299.99590 * 8 2 1 11 11 O 1.20824 * 119.99346 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00029 * 180.02562 * 10 8 2 13 13 C 1.45203 * 117.00016 * 180.02562 * 12 10 8 14 14 C 1.53038 * 109.45670 * 270.06708 * 13 12 10 15 15 C 1.53198 * 109.31101 * 178.61219 * 14 13 12 16 16 N 1.46924 * 108.77276 * 54.63394 * 15 14 13 17 17 C 1.36939 * 120.62822 * 126.41454 * 16 15 14 18 18 H 1.08000 * 120.00004 * 332.60516 * 17 16 15 19 19 C 1.38820 * 119.99847 * 152.60265 * 17 16 15 20 20 N 1.31614 * 119.99583 * 159.36172 * 19 17 16 21 21 Si 1.86796 * 119.99922 * 339.36545 * 19 17 16 22 22 H 1.48504 * 109.47273 * 92.91065 * 21 19 17 23 23 H 1.48505 * 109.46754 * 212.90793 * 21 19 17 24 24 H 1.48503 * 109.47304 * 332.90488 * 21 19 17 25 25 C 1.46931 * 118.73974 * 306.39168 * 16 15 14 26 26 C 1.53040 * 109.45941 * 149.99667 * 13 12 10 27 27 H 1.09002 * 109.47652 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47186 * 299.99467 * 1 2 3 29 29 H 1.08998 * 109.47875 * 59.99619 * 1 2 3 30 30 H 1.08995 * 109.47463 * 59.99677 * 4 2 1 31 31 H 1.09006 * 109.46945 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47046 * 60.00121 * 5 4 2 33 33 H 1.08998 * 109.47678 * 180.02562 * 5 4 2 34 34 H 1.08995 * 109.47456 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47414 * 300.00250 * 6 5 4 36 36 H 1.09006 * 109.46945 * 60.00289 * 7 6 5 37 37 H 1.08995 * 109.47463 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.45783 * 30.02633 * 13 12 10 39 39 H 1.08996 * 109.50169 * 298.56466 * 14 13 12 40 40 H 1.09003 * 109.49743 * 58.66576 * 14 13 12 41 41 H 1.08997 * 109.58547 * 294.84990 * 15 14 13 42 42 H 1.08993 * 109.58862 * 174.42197 * 15 14 13 43 43 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58690 * 293.81990 * 25 16 15 45 45 H 1.09003 * 109.58274 * 173.39921 * 25 16 15 46 46 H 1.08999 * 109.50237 * 301.33513 * 26 13 12 47 47 H 1.09002 * 109.49518 * 61.40805 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8851 -0.0003 7 6 1.5300 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2491 9 1 3.1301 -0.7217 1.2489 10 6 1.5378 -0.0109 2.4797 11 8 0.8428 0.9712 2.3688 12 8 1.8625 -0.4693 3.6987 13 6 1.3429 0.2645 4.8389 14 6 2.3374 1.3572 5.2380 15 6 1.7703 2.1514 6.4190 16 7 1.4356 1.2156 7.5010 17 6 1.9316 1.4028 8.7636 18 1 2.8691 1.9200 8.9043 19 6 1.2292 0.9277 9.8627 20 7 1.8505 0.7322 11.0064 21 14 -0.5977 0.5659 9.7184 22 1 -0.7930 -0.8635 9.3662 23 1 -1.2628 0.8514 11.0152 24 1 -1.1898 1.4221 8.6594 25 6 0.5582 0.0754 7.2027 26 6 1.1388 -0.6956 6.0131 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7208 -1.2497 32 1 0.4398 -2.1637 -1.2494 33 1 1.8935 -2.6777 -2.1392 34 1 1.6763 -3.9126 0.0000 35 1 3.1299 -2.8850 -0.0002 36 1 0.4400 -2.1638 1.2492 37 1 1.8937 -2.6774 2.1390 38 1 0.3895 0.7209 4.5731 39 1 3.2834 0.9000 5.5278 40 1 2.5000 2.0271 4.3937 41 1 0.8721 2.6826 6.1044 42 1 2.5152 2.8652 6.7706 43 1 1.3598 0.3999 11.7743 44 1 -0.4389 0.4373 6.9521 45 1 0.5034 -0.5806 8.0716 46 1 0.4485 -1.4867 5.7205 47 1 2.0961 -1.1339 6.2953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820308605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:50 Heat of formation + Delta-G solvation = -104.615147 kcal Electronic energy + Delta-G solvation = -25131.863055 eV Core-core repulsion = 21699.547684 eV Total energy + Delta-G solvation = -3432.315371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03839 -40.05052 -38.90592 -37.31759 -34.66510 -32.79286 -32.71688 -32.12136 -31.89852 -28.14588 -27.04819 -25.03788 -24.44184 -23.63030 -23.11669 -21.76524 -21.23453 -19.53619 -18.92535 -18.69537 -17.65291 -17.22733 -17.09210 -16.21406 -16.00462 -15.50299 -15.42418 -15.26228 -14.93483 -14.72324 -14.52522 -14.20383 -14.14960 -13.91445 -13.78868 -13.57808 -13.39857 -12.86787 -12.64936 -12.57883 -12.44767 -12.36673 -12.21146 -12.14503 -12.06012 -11.88453 -11.69293 -11.66062 -11.48919 -11.16629 -11.11355 -10.95197 -10.86917 -10.69273 -9.04499 -8.19388 -5.53254 1.19327 1.27892 1.40616 1.49122 1.65845 2.38829 2.99646 3.24251 3.46867 3.64971 3.69557 3.69981 3.77045 4.04005 4.10269 4.18765 4.20237 4.27328 4.35721 4.36359 4.42939 4.50393 4.52812 4.62049 4.65966 4.71962 4.80247 4.84256 4.87211 4.89525 4.94242 4.98352 5.07584 5.08024 5.17122 5.20888 5.24489 5.26944 5.36828 5.39972 5.44830 5.59017 5.71166 5.82049 6.09383 6.77025 6.84663 7.55605 7.95747 9.00259 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.003342 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.753132 B = 8376.916750 C = 8512.865403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.071 4.071 9 H 0.121 0.879 10 C 0.457 3.543 11 O -0.529 6.529 12 O -0.353 6.353 13 C 0.103 3.897 14 C -0.136 4.136 15 C 0.149 3.851 16 N -0.620 5.620 17 C -0.253 4.253 18 H 0.055 0.945 19 C -0.032 4.032 20 N -0.954 5.954 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.308 1.308 24 H -0.263 1.263 25 C 0.123 3.877 26 C -0.119 4.119 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -7.589 -27.608 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.092 4.092 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.090 4.090 9 H 0.139 0.861 10 C 0.302 3.698 11 O -0.419 6.419 12 O -0.270 6.270 13 C 0.048 3.952 14 C -0.175 4.175 15 C 0.024 3.976 16 N -0.345 5.345 17 C -0.383 4.383 18 H 0.073 0.927 19 C -0.227 4.227 20 N -0.600 5.600 21 Si 0.771 3.229 22 H -0.195 1.195 23 H -0.237 1.237 24 H -0.188 1.188 25 C -0.002 4.002 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.091 -7.316 -27.448 28.427 hybrid contribution -0.794 0.357 0.947 1.286 sum -1.885 -6.959 -26.501 27.465 Atomic orbital electron populations 1.22131 0.95255 1.02158 1.02280 1.20961 0.96446 0.98816 0.92982 0.91648 1.21560 1.01184 0.95802 0.96032 1.21625 1.01130 0.95142 0.98180 1.21520 1.01490 0.99140 0.92863 1.21578 1.01194 0.91808 1.00367 1.21281 1.03150 0.96605 0.87932 0.86118 1.24522 0.76901 0.82718 0.85649 1.90585 1.36693 1.27369 1.87215 1.86567 1.69498 1.55743 1.15179 1.22560 0.97299 0.92431 0.82864 1.22280 0.99103 0.97421 0.98710 1.21001 0.98197 0.91421 0.86995 1.44538 1.57390 1.25934 1.06605 1.18864 1.02064 1.34778 0.82568 0.92745 1.25895 1.01822 1.00195 0.94758 1.69957 1.37125 1.49607 1.03280 0.85967 0.82317 0.78624 0.75962 1.19459 1.23721 1.18798 1.21408 0.93032 0.89261 0.96489 1.22029 1.02774 0.97892 0.93151 0.91725 0.93120 0.92072 0.90751 0.90822 0.91815 0.90477 0.90553 0.90807 0.91736 0.90820 0.90876 0.91486 0.90812 0.94707 0.91505 0.92771 0.94539 0.91846 0.89301 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.18 71.98 0.59 -2.45 16 2 C -0.07 -1.24 2.36 -10.80 -0.03 -1.26 16 3 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 4 C -0.11 -1.22 5.45 30.60 0.17 -1.05 16 5 C -0.12 -1.22 5.65 30.59 0.17 -1.05 16 6 C -0.11 -1.20 5.92 30.60 0.18 -1.02 16 7 C -0.11 -1.73 4.86 30.60 0.15 -1.58 16 8 C -0.07 -1.30 2.41 -11.54 -0.03 -1.32 16 9 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 10 C 0.46 12.22 6.94 71.24 0.49 12.72 16 11 O -0.53 -16.84 12.88 21.97 0.28 -16.56 16 12 O -0.35 -10.37 9.78 -51.36 -0.50 -10.87 16 13 C 0.10 3.41 2.41 30.62 0.07 3.49 16 14 C -0.14 -4.67 5.72 30.67 0.18 -4.50 16 15 C 0.15 5.96 6.52 86.37 0.56 6.53 16 16 N -0.62 -29.61 2.77 -699.08 -1.94 -31.55 16 17 C -0.25 -14.47 10.04 84.03 0.84 -13.62 16 18 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 19 C -0.03 -1.85 5.23 84.86 0.44 -1.40 16 20 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 21 Si 0.94 46.24 24.34 68.60 1.67 47.91 16 22 H -0.27 -12.22 6.62 99.48 0.66 -11.56 16 23 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 24 H -0.26 -12.49 6.64 99.48 0.66 -11.83 16 25 C 0.12 5.23 4.20 86.36 0.36 5.59 16 26 C -0.12 -4.15 5.74 30.67 0.18 -3.97 16 27 H 0.06 1.07 4.81 -2.39 -0.01 1.06 16 28 H 0.05 1.27 5.52 -2.38 -0.01 1.26 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.06 0.69 6.43 -2.38 -0.02 0.67 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.08 6.43 -2.38 -0.02 1.06 16 37 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 38 H 0.07 2.54 7.16 -2.39 -0.02 2.52 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 43 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.04 1.50 7.07 -2.39 -0.02 1.48 16 45 H 0.06 2.92 4.50 -2.39 -0.01 2.91 16 46 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -67.02 345.86 4.99 -62.03 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.84 Total: 13.55 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.34 Total: -4.91 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -1.63 Total: -91.15 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.22 Total: -27.43 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.67 Total: 47.91 kcal Total: -67.02 4.99 -62.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820308605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.588 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds