Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.05603 * 2 1 4 4 C 1.53871 * 110.03386 * 238.58149 * 2 1 3 5 5 C 1.54269 * 106.59958 * 240.71678 * 4 2 1 6 6 C 1.54892 * 104.19196 * 336.38614 * 5 4 2 7 7 C 1.54263 * 110.03098 * 121.41150 * 2 1 3 8 8 C 1.52995 * 110.60090 * 24.16492 * 7 2 1 9 9 C 1.50696 * 110.49016 * 261.57365 * 7 2 1 10 10 O 1.20833 * 119.99960 * 3.77029 * 9 7 2 11 11 O 1.34229 * 120.00461 * 183.77019 * 9 7 2 12 12 C 1.45201 * 117.00439 * 180.02562 * 11 9 7 13 13 C 1.53041 * 109.45963 * 150.00321 * 12 11 9 14 14 C 1.53193 * 109.31105 * 181.38702 * 13 12 11 15 15 N 1.46928 * 108.77520 * 305.36495 * 14 13 12 16 16 C 1.36940 * 120.62959 * 233.58553 * 15 14 13 17 17 H 1.07996 * 119.99628 * 152.32038 * 16 15 14 18 18 C 1.38808 * 119.99786 * 332.32286 * 16 15 14 19 19 N 1.31614 * 120.00335 * 342.64662 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 162.64095 * 18 16 15 21 21 H 1.48505 * 109.47053 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47205 * 300.00434 * 20 18 16 23 23 H 1.48499 * 109.46877 * 60.00347 * 20 18 16 24 24 C 1.46923 * 118.74171 * 53.85993 * 15 14 13 25 25 C 1.53038 * 109.45878 * 270.06929 * 12 11 9 26 26 H 1.09004 * 109.47530 * 298.59006 * 1 2 3 27 27 H 1.09006 * 109.47272 * 58.58534 * 1 2 3 28 28 H 1.09002 * 109.47296 * 178.58236 * 1 2 3 29 29 H 1.09007 * 110.03344 * 121.43106 * 4 2 1 30 30 H 1.09001 * 110.07238 * 0.02562 * 4 2 1 31 31 H 1.08999 * 110.48682 * 217.71127 * 5 4 2 32 32 H 1.08994 * 110.60129 * 95.11884 * 5 4 2 33 33 H 1.09000 * 110.76003 * 279.62814 * 6 5 4 34 34 H 1.09004 * 110.91250 * 156.32729 * 6 5 4 35 35 H 1.09004 * 109.47211 * 298.08103 * 8 7 2 36 36 H 1.08999 * 109.47270 * 58.07454 * 8 7 2 37 37 H 1.08999 * 109.47810 * 178.08342 * 8 7 2 38 38 H 1.08998 * 109.44397 * 30.03529 * 12 11 9 39 39 H 1.08999 * 109.49799 * 61.43689 * 13 12 11 40 40 H 1.08995 * 109.49434 * 301.33521 * 13 12 11 41 41 H 1.08999 * 109.58803 * 185.57393 * 14 13 12 42 42 H 1.09008 * 109.58457 * 65.14824 * 14 13 12 43 43 H 0.97006 * 120.00347 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.59145 * 65.92479 * 24 15 14 45 45 H 1.08998 * 109.59312 * 186.35605 * 24 15 14 46 46 H 1.08994 * 109.50474 * 298.56629 * 25 12 11 47 47 H 1.09005 * 109.49773 * 58.66363 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8874 -1.9407 -0.7034 6 6 3.3136 -1.5006 0.7192 7 6 2.0583 -0.7554 1.2369 8 6 1.0152 -1.7525 1.7450 9 6 2.4334 0.2150 2.3272 10 8 2.2351 1.3976 2.1779 11 8 2.9877 -0.2342 3.4641 12 6 3.3227 0.7570 4.4708 13 6 3.2166 0.1273 5.8616 14 6 3.5369 1.1850 6.9225 15 7 4.8507 1.7712 6.6242 16 6 5.8336 1.8021 7.5772 17 1 6.8724 1.7995 7.2818 18 6 5.4947 1.8368 8.9228 19 7 4.2772 2.1803 9.2862 20 14 6.7665 1.3955 10.2180 21 1 6.1586 1.5105 11.5680 22 1 7.2313 0.0020 10.0008 23 1 7.9207 2.3241 10.1147 24 6 5.0880 2.3292 5.2859 25 6 4.7521 1.2536 4.2416 26 1 -0.3634 0.4918 0.9024 27 1 -0.3634 0.5357 -0.8771 28 1 -0.3634 -1.0274 -0.0254 29 1 2.6867 -0.0954 -1.8324 30 1 1.2234 -1.1192 -1.8331 31 1 3.7637 -2.1038 -1.3308 32 1 2.2791 -2.8439 -0.6571 33 1 4.1710 -0.8289 0.6752 34 1 3.5343 -2.3659 1.3444 35 1 0.1177 -1.2151 2.0513 36 1 0.7647 -2.4536 0.9488 37 1 1.4196 -2.2993 2.5968 38 1 2.6308 1.5961 4.3983 39 1 3.9260 -0.6963 5.9432 40 1 2.2045 -0.2470 6.0151 41 1 3.5598 0.7192 7.9077 42 1 2.7757 1.9650 6.9023 43 1 4.0405 2.2049 10.2266 44 1 4.4507 3.2005 5.1349 45 1 6.1346 2.6185 5.1907 46 1 5.4470 0.4195 4.3384 47 1 4.8328 1.6809 3.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835230740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = -90.338241 kcal Electronic energy + Delta-G solvation = -25187.268336 eV Core-core repulsion = 21755.572058 eV Total energy + Delta-G solvation = -3431.696278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88869 -38.84453 -37.17441 -35.73303 -32.73194 -31.67389 -31.31369 -30.28682 -29.56974 -26.31440 -25.61079 -25.07722 -22.89961 -22.20887 -21.38566 -20.54225 -19.35784 -18.59268 -17.36739 -17.00985 -16.45721 -15.65740 -15.42493 -14.88023 -14.49684 -14.27754 -13.87433 -13.57527 -13.32272 -13.18668 -13.03396 -12.96493 -12.69254 -12.52189 -12.45144 -11.98447 -11.77180 -11.51219 -11.29420 -11.19688 -11.04241 -10.94822 -10.86570 -10.77906 -10.72824 -10.72322 -10.54557 -10.39213 -10.18653 -10.05173 -9.84386 -9.63222 -9.42407 -8.49305 -6.73701 -5.82117 -3.24517 2.43022 2.93012 3.38076 3.43610 3.45101 4.15357 4.30998 4.47797 4.52195 4.93233 4.99853 5.05102 5.06350 5.17337 5.27290 5.30057 5.34828 5.37229 5.43494 5.50130 5.53018 5.57863 5.67030 5.71387 5.74485 5.75718 5.83025 5.90446 5.95713 6.01527 6.08574 6.10876 6.22533 6.25088 6.42154 6.42946 6.51819 6.59531 6.72604 6.88652 6.98922 7.28569 7.57745 7.76970 8.04998 8.41268 9.17242 9.80159 10.36887 11.26976 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.003247 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.532833 B = 8620.333587 C = 8721.944749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.055 4.055 8 C -0.137 4.137 9 C 0.468 3.532 10 O -0.511 6.511 11 O -0.353 6.353 12 C 0.097 3.903 13 C -0.135 4.135 14 C 0.174 3.826 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.149 3.851 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.022 0.978 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 -9.178 -19.104 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.147 4.147 7 C -0.056 4.056 8 C -0.194 4.194 9 C 0.311 3.689 10 O -0.399 6.399 11 O -0.269 6.269 12 C 0.043 3.957 13 C -0.174 4.174 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.734 3.266 21 H -0.216 1.216 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.022 3.978 25 C -0.184 4.184 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.538 -8.774 -18.912 21.850 hybrid contribution 0.593 0.032 0.754 0.960 sum -5.945 -8.742 -18.159 21.012 Atomic orbital electron populations 1.21944 0.94569 1.01762 1.01894 1.21757 0.96273 1.00352 0.91885 0.89190 1.22231 0.99558 0.96953 0.96981 1.22350 0.99759 0.98122 0.95744 1.22542 0.95615 1.00152 0.96400 1.21373 0.97874 0.94590 0.91779 1.21862 0.97747 0.98050 1.01725 1.23433 0.73770 0.88696 0.83036 1.90621 1.51213 1.18455 1.79580 1.86556 1.71484 1.42826 1.26080 1.22929 0.96930 0.89956 0.85851 1.22444 1.00933 1.01344 0.92673 1.20817 0.86177 0.91983 0.96243 1.44129 1.12214 1.66555 1.08615 1.19161 0.87707 1.45673 0.85947 0.91541 1.25056 0.96789 1.00084 0.97640 1.70012 1.19128 1.49755 1.15864 0.86338 0.80842 0.78665 0.80740 1.21598 1.20949 1.20848 1.20949 0.99058 0.92458 0.85328 1.22523 0.95394 1.00890 0.99642 0.92463 0.92608 0.92177 0.91605 0.91378 0.91291 0.91245 0.90964 0.90081 0.91761 0.91075 0.91274 0.90525 0.91491 0.92474 0.88525 0.96058 0.93462 0.96045 0.92109 0.91391 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.71 37.16 0.29 -1.04 16 2 C -0.08 -0.88 2.77 -89.51 -0.25 -1.13 16 3 H 0.09 1.14 6.91 -51.92 -0.36 0.78 16 4 C -0.12 -0.97 6.46 -25.61 -0.17 -1.13 16 5 C -0.12 -0.94 6.48 -25.07 -0.16 -1.10 16 6 C -0.11 -1.09 5.78 -24.73 -0.14 -1.23 16 7 C -0.06 -0.63 0.74 -154.00 -0.11 -0.74 16 8 C -0.14 -1.33 7.16 37.16 0.27 -1.06 16 9 C 0.47 7.36 6.56 36.00 0.24 7.60 16 10 O -0.51 -9.40 14.68 -18.76 -0.28 -9.67 16 11 O -0.35 -6.02 9.82 -39.25 -0.39 -6.40 16 12 C 0.10 1.85 2.41 -26.69 -0.06 1.79 16 13 C -0.13 -2.68 5.74 -26.61 -0.15 -2.83 16 14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 15 N -0.59 -15.08 2.99 -172.05 -0.51 -15.59 16 16 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 17 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 18 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 20 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 3.26 6.54 -3.48 -0.02 3.23 16 25 C -0.14 -2.78 5.73 -26.38 -0.15 -2.93 16 26 H 0.06 0.60 7.73 -51.93 -0.40 0.20 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 6.62 -51.93 -0.34 0.12 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.46 7.68 -51.93 -0.40 0.06 16 33 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.06 0.63 6.79 -51.93 -0.35 0.28 16 36 H 0.07 0.54 6.87 -51.93 -0.36 0.18 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 2.56 6.04 -51.93 -0.31 2.25 16 42 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -30.23 358.60 -9.19 -39.42 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.32 Total: -0.63 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.69 Total: -3.59 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.11 Total: -41.10 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.66 Total: -16.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.23 -9.19 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835230740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.921 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds