Wall clock time and date at job start Tue Mar 31 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.05603 * 2 1 4 4 C 1.53871 * 110.03386 * 238.58149 * 2 1 3 5 5 C 1.54269 * 106.59958 * 240.71678 * 4 2 1 6 6 C 1.54892 * 104.19196 * 336.38614 * 5 4 2 7 7 C 1.54263 * 110.03098 * 121.41150 * 2 1 3 8 8 C 1.52995 * 110.60090 * 24.16492 * 7 2 1 9 9 C 1.50696 * 110.49016 * 261.57365 * 7 2 1 10 10 O 1.20833 * 119.99960 * 3.77029 * 9 7 2 11 11 O 1.34229 * 120.00461 * 183.77019 * 9 7 2 12 12 C 1.45201 * 117.00439 * 180.02562 * 11 9 7 13 13 C 1.53041 * 109.45963 * 150.00321 * 12 11 9 14 14 C 1.53193 * 109.31105 * 181.38702 * 13 12 11 15 15 N 1.46928 * 108.77520 * 305.36495 * 14 13 12 16 16 C 1.36940 * 120.62959 * 233.58553 * 15 14 13 17 17 H 1.07996 * 119.99628 * 152.32038 * 16 15 14 18 18 C 1.38808 * 119.99786 * 332.32286 * 16 15 14 19 19 N 1.31614 * 120.00335 * 342.64662 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 162.64095 * 18 16 15 21 21 H 1.48505 * 109.47053 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47205 * 300.00434 * 20 18 16 23 23 H 1.48499 * 109.46877 * 60.00347 * 20 18 16 24 24 C 1.46923 * 118.74171 * 53.85993 * 15 14 13 25 25 C 1.53038 * 109.45878 * 270.06929 * 12 11 9 26 26 H 1.09004 * 109.47530 * 298.59006 * 1 2 3 27 27 H 1.09006 * 109.47272 * 58.58534 * 1 2 3 28 28 H 1.09002 * 109.47296 * 178.58236 * 1 2 3 29 29 H 1.09007 * 110.03344 * 121.43106 * 4 2 1 30 30 H 1.09001 * 110.07238 * 0.02562 * 4 2 1 31 31 H 1.08999 * 110.48682 * 217.71127 * 5 4 2 32 32 H 1.08994 * 110.60129 * 95.11884 * 5 4 2 33 33 H 1.09000 * 110.76003 * 279.62814 * 6 5 4 34 34 H 1.09004 * 110.91250 * 156.32729 * 6 5 4 35 35 H 1.09004 * 109.47211 * 298.08103 * 8 7 2 36 36 H 1.08999 * 109.47270 * 58.07454 * 8 7 2 37 37 H 1.08999 * 109.47810 * 178.08342 * 8 7 2 38 38 H 1.08998 * 109.44397 * 30.03529 * 12 11 9 39 39 H 1.08999 * 109.49799 * 61.43689 * 13 12 11 40 40 H 1.08995 * 109.49434 * 301.33521 * 13 12 11 41 41 H 1.08999 * 109.58803 * 185.57393 * 14 13 12 42 42 H 1.09008 * 109.58457 * 65.14824 * 14 13 12 43 43 H 0.97006 * 120.00347 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.59145 * 65.92479 * 24 15 14 45 45 H 1.08998 * 109.59312 * 186.35605 * 24 15 14 46 46 H 1.08994 * 109.50474 * 298.56629 * 25 12 11 47 47 H 1.09005 * 109.49773 * 58.66363 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8874 -1.9407 -0.7034 6 6 3.3136 -1.5006 0.7192 7 6 2.0583 -0.7554 1.2369 8 6 1.0152 -1.7525 1.7450 9 6 2.4334 0.2150 2.3272 10 8 2.2351 1.3976 2.1779 11 8 2.9877 -0.2342 3.4641 12 6 3.3227 0.7570 4.4708 13 6 3.2166 0.1273 5.8616 14 6 3.5369 1.1850 6.9225 15 7 4.8507 1.7712 6.6242 16 6 5.8336 1.8021 7.5772 17 1 6.8724 1.7995 7.2818 18 6 5.4947 1.8368 8.9228 19 7 4.2772 2.1803 9.2862 20 14 6.7665 1.3955 10.2180 21 1 6.1586 1.5105 11.5680 22 1 7.2313 0.0020 10.0008 23 1 7.9207 2.3241 10.1147 24 6 5.0880 2.3292 5.2859 25 6 4.7521 1.2536 4.2416 26 1 -0.3634 0.4918 0.9024 27 1 -0.3634 0.5357 -0.8771 28 1 -0.3634 -1.0274 -0.0254 29 1 2.6867 -0.0954 -1.8324 30 1 1.2234 -1.1192 -1.8331 31 1 3.7637 -2.1038 -1.3308 32 1 2.2791 -2.8439 -0.6571 33 1 4.1710 -0.8289 0.6752 34 1 3.5343 -2.3659 1.3444 35 1 0.1177 -1.2151 2.0513 36 1 0.7647 -2.4536 0.9488 37 1 1.4196 -2.2993 2.5968 38 1 2.6308 1.5961 4.3983 39 1 3.9260 -0.6963 5.9432 40 1 2.2045 -0.2470 6.0151 41 1 3.5598 0.7192 7.9077 42 1 2.7757 1.9650 6.9023 43 1 4.0405 2.2049 10.2266 44 1 4.4507 3.2005 5.1349 45 1 6.1346 2.6185 5.1907 46 1 5.4470 0.4195 4.3384 47 1 4.8328 1.6809 3.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835230740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:52 Heat of formation + Delta-G solvation = -105.028211 kcal Electronic energy + Delta-G solvation = -25187.905341 eV Core-core repulsion = 21755.572058 eV Total energy + Delta-G solvation = -3432.333283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.08308 -39.99348 -38.72646 -37.25742 -34.62740 -32.48650 -32.32304 -31.89457 -31.37628 -27.40806 -26.87504 -26.21571 -24.44229 -23.94762 -22.78765 -21.35414 -21.08851 -19.66375 -18.86368 -18.50229 -17.78119 -17.07397 -16.76954 -16.17709 -15.93242 -15.45578 -15.28429 -15.13709 -14.93989 -14.51538 -14.25391 -14.22135 -13.91043 -13.51975 -13.43814 -13.28967 -13.08939 -12.76264 -12.71245 -12.59527 -12.58881 -12.50370 -12.18785 -12.01698 -11.93491 -11.90065 -11.71865 -11.64287 -11.49903 -11.47726 -11.31184 -11.12590 -11.03056 -10.57423 -8.79399 -7.92273 -5.38587 1.16863 1.47751 1.50055 1.57370 1.64930 2.49545 3.23547 3.31716 3.46899 3.55327 3.66918 3.76162 3.82504 3.94942 4.11028 4.25261 4.31782 4.35330 4.37572 4.42025 4.51065 4.59515 4.61856 4.69286 4.73342 4.81296 4.83680 4.88474 4.92868 4.97505 4.99738 5.01667 5.07416 5.15156 5.16519 5.23714 5.26598 5.34321 5.36441 5.45269 5.50598 5.51921 5.60277 5.66195 6.33575 6.72942 7.08436 7.76584 8.30124 9.15319 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.003247 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.532833 B = 8620.333587 C = 8721.944749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.059 0.941 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.054 4.054 8 C -0.135 4.135 9 C 0.463 3.537 10 O -0.542 6.542 11 O -0.349 6.349 12 C 0.104 3.896 13 C -0.120 4.120 14 C 0.181 3.819 15 N -0.610 5.610 16 C -0.270 4.270 17 H 0.070 0.930 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.293 1.293 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.147 3.853 25 C -0.131 4.131 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.070 0.930 42 H -0.001 1.001 43 H 0.253 0.747 44 H 0.012 0.988 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 -11.429 -21.005 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.078 0.922 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.432 6.432 11 O -0.266 6.266 12 C 0.049 3.951 13 C -0.159 4.159 14 C 0.055 3.945 15 N -0.333 5.333 16 C -0.400 4.400 17 H 0.088 0.912 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.800 3.200 21 H -0.219 1.219 22 H -0.201 1.201 23 H -0.201 1.201 24 C 0.021 3.979 25 C -0.170 4.170 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.356 -11.035 -20.849 24.430 hybrid contribution 0.509 0.807 1.283 1.599 sum -5.847 -10.228 -19.565 22.839 Atomic orbital electron populations 1.21942 0.93604 1.03035 1.01343 1.21777 0.97125 0.98973 0.92625 0.92227 1.22222 1.00304 0.96880 0.95849 1.22354 1.00442 0.98428 0.93917 1.22598 0.94271 0.99811 0.98236 1.21615 0.99330 0.94199 0.90370 1.21902 0.96768 0.97861 1.02641 1.24502 0.72503 0.89266 0.82996 1.90612 1.52414 1.20170 1.79979 1.86562 1.71860 1.41801 1.26334 1.22592 0.96459 0.89799 0.86217 1.22163 1.02039 0.99750 0.91950 1.20594 0.85342 0.92138 0.96455 1.44381 1.12185 1.67271 1.09478 1.19511 0.88399 1.45342 0.86770 0.91211 1.25849 0.98720 1.00213 0.99542 1.70169 1.21005 1.50953 1.15920 0.85278 0.78460 0.78586 0.77724 1.21905 1.20135 1.20120 1.21037 0.99295 0.92992 0.84607 1.22323 0.95494 1.00063 0.99111 0.94570 0.91595 0.90005 0.91662 0.89341 0.90093 0.89300 0.92454 0.89423 0.92219 0.88050 0.91637 0.92267 0.91254 0.90563 0.91141 0.98323 0.93837 0.96982 0.91463 0.90956 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.71 71.98 0.56 -1.79 16 2 C -0.09 -1.68 2.77 -10.07 -0.03 -1.70 16 3 H 0.06 1.52 6.91 -2.38 -0.02 1.50 16 4 C -0.12 -1.52 6.46 31.32 0.20 -1.31 16 5 C -0.11 -1.33 6.48 31.67 0.21 -1.13 16 6 C -0.11 -1.97 5.78 31.89 0.18 -1.79 16 7 C -0.05 -1.15 0.74 -51.86 -0.04 -1.19 16 8 C -0.13 -2.28 7.16 71.98 0.52 -1.76 16 9 C 0.46 14.43 6.56 71.23 0.47 14.90 16 10 O -0.54 -20.36 14.68 21.94 0.32 -20.04 16 11 O -0.35 -11.68 9.82 -51.41 -0.51 -12.18 16 12 C 0.10 3.97 2.41 30.62 0.07 4.04 16 13 C -0.12 -4.78 5.74 30.67 0.18 -4.60 16 14 C 0.18 8.96 5.31 86.36 0.46 9.42 16 15 N -0.61 -31.61 2.99 -698.24 -2.09 -33.70 16 16 C -0.27 -15.04 9.58 84.03 0.81 -14.24 16 17 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 18 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 19 N -0.94 -55.40 11.19 21.65 0.24 -55.16 16 20 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.15 6.49 6.54 86.51 0.57 7.06 16 25 C -0.13 -4.97 5.73 30.82 0.18 -4.79 16 26 H 0.04 0.74 7.73 -2.38 -0.02 0.72 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 28 H 0.08 0.98 6.62 -2.39 -0.02 0.97 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.09 0.84 7.67 -2.39 -0.02 0.82 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.74 7.68 -2.39 -0.02 0.72 16 33 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 34 H 0.09 1.43 8.05 -2.38 -0.02 1.42 16 35 H 0.06 1.07 6.79 -2.38 -0.02 1.05 16 36 H 0.10 1.11 6.87 -2.39 -0.02 1.09 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 2.48 7.16 -2.39 -0.02 2.47 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.07 3.86 6.04 -2.39 -0.01 3.85 16 42 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 43 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 46 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -66.46 358.60 5.66 -60.79 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.92 Total: 14.71 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.74 Total: -1.14 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.84 Total: -88.85 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.18 Total: -32.22 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -66.46 5.66 -60.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835230740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.235 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds