Wall clock time and date at job start Tue Mar 31 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 110.01636 * 2 1 4 4 C 1.53870 * 110.03026 * 121.38989 * 2 1 3 5 5 C 1.54266 * 106.59643 * 119.33290 * 4 2 1 6 6 C 1.54884 * 104.19655 * 23.60868 * 5 4 2 7 7 C 1.54265 * 110.02823 * 238.60753 * 2 1 3 8 8 C 1.52990 * 110.49028 * 335.73677 * 7 2 1 9 9 C 1.50702 * 110.48490 * 98.38169 * 7 2 1 10 10 O 1.20828 * 119.99986 * 359.97438 * 9 7 2 11 11 O 1.34226 * 120.00173 * 179.97438 * 9 7 2 12 12 C 1.45201 * 117.00293 * 179.97438 * 11 9 7 13 13 C 1.53039 * 109.45896 * 270.06969 * 12 11 9 14 14 C 1.53193 * 109.31357 * 178.61401 * 13 12 11 15 15 N 1.46927 * 108.77525 * 54.63254 * 14 13 12 16 16 C 1.36936 * 120.62944 * 126.37044 * 15 14 13 17 17 H 1.07995 * 120.00230 * 207.70138 * 16 15 14 18 18 C 1.38815 * 119.99873 * 27.70097 * 16 15 14 19 19 N 1.31615 * 119.99832 * 17.34937 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 197.34841 * 18 16 15 21 21 H 1.48503 * 109.46945 * 90.00350 * 20 18 16 22 22 H 1.48501 * 109.47228 * 209.99812 * 20 18 16 23 23 H 1.48492 * 109.47357 * 330.00370 * 20 18 16 24 24 C 1.46921 * 118.74014 * 306.39683 * 15 14 13 25 25 C 1.53039 * 109.46040 * 150.00262 * 12 11 9 26 26 H 1.08998 * 109.46971 * 300.70160 * 1 2 3 27 27 H 1.08993 * 109.46729 * 60.70102 * 1 2 3 28 28 H 1.08997 * 109.47146 * 180.70357 * 1 2 3 29 29 H 1.09000 * 110.03571 * 238.61590 * 4 2 1 30 30 H 1.09000 * 110.03739 * 0.02562 * 4 2 1 31 31 H 1.09001 * 110.49223 * 142.28956 * 5 4 2 32 32 H 1.08999 * 110.48910 * 264.80055 * 5 4 2 33 33 H 1.09004 * 110.76024 * 80.37232 * 6 5 4 34 34 H 1.09005 * 110.76117 * 203.55611 * 6 5 4 35 35 H 1.09005 * 109.47275 * 60.00128 * 8 7 2 36 36 H 1.09005 * 109.47232 * 180.02562 * 8 7 2 37 37 H 1.08996 * 109.47325 * 299.99997 * 8 7 2 38 38 H 1.08997 * 109.45637 * 30.02775 * 12 11 9 39 39 H 1.09004 * 109.49940 * 298.56255 * 13 12 11 40 40 H 1.09001 * 109.49984 * 58.66076 * 13 12 11 41 41 H 1.09005 * 109.58555 * 294.84814 * 14 13 12 42 42 H 1.08995 * 109.58676 * 174.42238 * 14 13 12 43 43 H 0.97001 * 119.99705 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58652 * 293.81809 * 24 15 14 45 45 H 1.09002 * 109.58788 * 173.39442 * 24 15 14 46 46 H 1.08998 * 109.49508 * 301.33679 * 25 12 11 47 47 H 1.08996 * 109.50085 * 61.40229 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0571 -0.7530 1.2340 5 6 2.8885 -1.9396 0.7044 6 6 3.3150 -1.4997 -0.7181 7 6 2.0584 -0.7550 -1.2372 8 6 1.0143 -1.7528 -1.7419 9 6 2.4324 0.2158 -2.3275 10 8 2.2963 1.4035 -2.1517 11 8 2.9167 -0.2388 -3.4939 12 6 3.2552 0.7532 -4.4987 13 6 2.0324 1.0266 -5.3775 14 6 2.3830 2.0986 -6.4142 15 7 3.5752 1.6667 -7.1564 16 6 3.5639 1.6135 -8.5247 17 1 4.2058 0.9170 -9.0434 18 6 2.7272 2.4550 -9.2451 19 7 2.2080 3.5181 -8.6684 20 14 2.3383 2.0784 -11.0329 21 1 1.1281 1.2208 -11.1062 22 1 2.0905 3.3473 -11.7635 23 1 3.4866 1.3677 -11.6503 24 6 4.7795 1.2925 -6.4027 25 6 4.4021 0.2295 -5.3661 26 1 -0.3633 0.5247 0.8836 27 1 -0.3632 0.5029 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 2.6861 -0.0943 1.8330 30 1 1.2230 -1.1188 1.8327 31 1 3.7646 -2.1021 1.3322 32 1 2.2795 -2.8425 0.6600 33 1 4.1719 -0.8274 -0.6740 34 1 3.5379 -2.3666 -1.3401 35 1 0.1038 -1.2193 -2.0148 36 1 1.4044 -2.2766 -2.6147 37 1 0.7911 -2.4740 -0.9557 38 1 3.5632 1.6765 -4.0081 39 1 1.7387 0.1093 -5.8879 40 1 1.2086 1.3773 -4.7558 41 1 2.5892 3.0421 -5.9087 42 1 1.5491 2.2260 -7.1044 43 1 1.6237 4.1062 -9.1719 44 1 5.1811 2.1703 -5.8963 45 1 5.5269 0.8881 -7.0853 46 1 5.2649 0.0129 -4.7363 47 1 4.0863 -0.6805 -5.8761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835230742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:59 Heat of formation + Delta-G solvation = -89.980012 kcal Electronic energy + Delta-G solvation = -25219.643362 eV Core-core repulsion = 21787.962618 eV Total energy + Delta-G solvation = -3431.680744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87347 -38.83978 -37.17767 -35.72453 -32.74300 -31.68069 -31.29463 -30.21765 -29.64561 -26.28024 -25.61164 -25.07565 -22.88597 -22.22392 -21.36367 -20.56021 -19.35097 -18.57130 -17.34980 -17.01196 -16.45658 -15.63648 -15.42539 -14.91430 -14.47282 -14.31030 -13.72448 -13.59137 -13.36701 -13.26522 -12.99449 -12.92386 -12.61941 -12.57253 -12.41775 -11.93543 -11.78373 -11.52081 -11.30170 -11.19906 -11.15522 -10.93846 -10.85371 -10.76150 -10.75113 -10.66296 -10.52924 -10.31757 -10.18681 -10.00584 -9.89719 -9.62710 -9.38656 -8.48719 -6.73694 -5.81168 -3.24079 2.44753 2.93601 3.37747 3.44401 3.45710 4.16473 4.30794 4.47879 4.53014 4.93724 5.01077 5.05574 5.06954 5.17942 5.26210 5.30995 5.37511 5.38308 5.45014 5.50776 5.53716 5.59198 5.68068 5.70804 5.74890 5.75713 5.84622 5.92139 5.95611 6.02975 6.10385 6.12075 6.21613 6.26944 6.34000 6.48757 6.53647 6.59970 6.70004 6.88905 6.99158 7.31539 7.61422 7.77745 8.06492 8.41695 9.17643 9.80721 10.37126 11.27747 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032297 B = 0.003361 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.754256 B = 8327.707402 C = 8605.232589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.091 0.909 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.054 4.054 8 C -0.138 4.138 9 C 0.468 3.532 10 O -0.508 6.508 11 O -0.354 6.354 12 C 0.097 3.903 13 C -0.152 4.152 14 C 0.175 3.825 15 N -0.593 5.593 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.148 3.852 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.094 0.906 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -11.485 18.765 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.147 4.147 7 C -0.056 4.056 8 C -0.195 4.195 9 C 0.311 3.689 10 O -0.396 6.396 11 O -0.271 6.271 12 C 0.043 3.957 13 C -0.192 4.192 14 C 0.049 3.951 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.021 3.979 25 C -0.166 4.166 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.912 -10.970 18.672 21.675 hybrid contribution -0.283 0.118 -0.942 0.991 sum -1.196 -10.853 17.729 20.822 Atomic orbital electron populations 1.21955 0.94557 1.01805 1.01934 1.21775 0.96301 1.00452 0.91863 0.89086 1.22228 0.99546 0.96930 0.96999 1.22351 0.99742 0.98179 0.95693 1.22552 0.95595 1.00061 0.96453 1.21383 0.97836 0.94587 0.91756 1.21873 0.97840 0.98035 1.01714 1.23404 0.73814 0.88798 0.82912 1.90630 1.50125 1.18152 1.80730 1.86525 1.73906 1.42567 1.24084 1.22908 0.96894 0.90136 0.85760 1.22647 0.95737 1.02370 0.98412 1.20770 0.91594 0.91209 0.91563 1.44128 1.07100 1.77847 1.02455 1.19210 1.23261 1.14765 0.81269 0.91434 1.25068 1.01609 0.94952 0.97986 1.70034 1.35278 1.12724 1.36567 0.86260 0.78484 0.77205 0.84633 1.21397 1.21744 1.20370 1.20889 0.90508 0.93990 0.92491 1.22215 0.95665 1.01323 0.97438 0.92591 0.92421 0.92144 0.91619 0.91370 0.91313 0.91226 0.91030 0.90124 0.91636 0.91263 0.91159 0.90532 0.91757 0.92916 0.96024 0.88825 0.93525 0.96138 0.91819 0.92365 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.70 37.16 0.29 -1.11 16 2 C -0.09 -0.91 2.80 -89.50 -0.25 -1.16 16 3 H 0.09 1.18 6.85 -51.93 -0.36 0.82 16 4 C -0.12 -0.97 6.46 -25.62 -0.17 -1.14 16 5 C -0.12 -0.92 6.47 -25.07 -0.16 -1.08 16 6 C -0.11 -1.06 5.80 -24.67 -0.14 -1.20 16 7 C -0.05 -0.63 0.75 -153.94 -0.12 -0.75 16 8 C -0.14 -1.39 7.17 37.15 0.27 -1.12 16 9 C 0.47 7.48 6.60 36.01 0.24 7.71 16 10 O -0.51 -9.59 14.64 -18.75 -0.27 -9.87 16 11 O -0.35 -6.04 9.73 -39.25 -0.38 -6.42 16 12 C 0.10 1.84 2.41 -26.69 -0.06 1.78 16 13 C -0.15 -3.17 5.72 -26.61 -0.15 -3.33 16 14 C 0.17 4.33 5.31 -3.71 -0.02 4.31 16 15 N -0.59 -15.08 2.99 -172.32 -0.52 -15.59 16 16 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 17 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 20 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 25 C -0.13 -2.31 5.74 -26.61 -0.15 -2.46 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 28 H 0.06 0.49 6.59 -51.93 -0.34 0.15 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 7.64 -51.93 -0.40 0.06 16 33 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 35 H 0.06 0.68 6.66 -51.93 -0.35 0.34 16 36 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 38 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 2.56 6.04 -51.93 -0.31 2.25 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -30.60 358.25 -9.18 -39.78 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.31 Total: -0.57 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.69 Total: -3.64 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.10 Total: -41.37 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.66 Total: -16.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.60 -9.18 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835230742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.204 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds