Wall clock time and date at job start Tue Mar 31 2020 06:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 110.01636 * 2 1 4 4 C 1.53870 * 110.03026 * 121.38989 * 2 1 3 5 5 C 1.54266 * 106.59643 * 119.33290 * 4 2 1 6 6 C 1.54884 * 104.19655 * 23.60868 * 5 4 2 7 7 C 1.54265 * 110.02823 * 238.60753 * 2 1 3 8 8 C 1.52990 * 110.49028 * 335.73677 * 7 2 1 9 9 C 1.50702 * 110.48490 * 98.38169 * 7 2 1 10 10 O 1.20828 * 119.99986 * 359.97438 * 9 7 2 11 11 O 1.34226 * 120.00173 * 179.97438 * 9 7 2 12 12 C 1.45201 * 117.00293 * 179.97438 * 11 9 7 13 13 C 1.53039 * 109.45896 * 270.06969 * 12 11 9 14 14 C 1.53193 * 109.31357 * 178.61401 * 13 12 11 15 15 N 1.46927 * 108.77525 * 54.63254 * 14 13 12 16 16 C 1.36936 * 120.62944 * 126.37044 * 15 14 13 17 17 H 1.07995 * 120.00230 * 207.70138 * 16 15 14 18 18 C 1.38815 * 119.99873 * 27.70097 * 16 15 14 19 19 N 1.31615 * 119.99832 * 17.34937 * 18 16 15 20 20 Si 1.86801 * 119.99875 * 197.34841 * 18 16 15 21 21 H 1.48503 * 109.46945 * 90.00350 * 20 18 16 22 22 H 1.48501 * 109.47228 * 209.99812 * 20 18 16 23 23 H 1.48492 * 109.47357 * 330.00370 * 20 18 16 24 24 C 1.46921 * 118.74014 * 306.39683 * 15 14 13 25 25 C 1.53039 * 109.46040 * 150.00262 * 12 11 9 26 26 H 1.08998 * 109.46971 * 300.70160 * 1 2 3 27 27 H 1.08993 * 109.46729 * 60.70102 * 1 2 3 28 28 H 1.08997 * 109.47146 * 180.70357 * 1 2 3 29 29 H 1.09000 * 110.03571 * 238.61590 * 4 2 1 30 30 H 1.09000 * 110.03739 * 0.02562 * 4 2 1 31 31 H 1.09001 * 110.49223 * 142.28956 * 5 4 2 32 32 H 1.08999 * 110.48910 * 264.80055 * 5 4 2 33 33 H 1.09004 * 110.76024 * 80.37232 * 6 5 4 34 34 H 1.09005 * 110.76117 * 203.55611 * 6 5 4 35 35 H 1.09005 * 109.47275 * 60.00128 * 8 7 2 36 36 H 1.09005 * 109.47232 * 180.02562 * 8 7 2 37 37 H 1.08996 * 109.47325 * 299.99997 * 8 7 2 38 38 H 1.08997 * 109.45637 * 30.02775 * 12 11 9 39 39 H 1.09004 * 109.49940 * 298.56255 * 13 12 11 40 40 H 1.09001 * 109.49984 * 58.66076 * 13 12 11 41 41 H 1.09005 * 109.58555 * 294.84814 * 14 13 12 42 42 H 1.08995 * 109.58676 * 174.42238 * 14 13 12 43 43 H 0.97001 * 119.99705 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58652 * 293.81809 * 24 15 14 45 45 H 1.09002 * 109.58788 * 173.39442 * 24 15 14 46 46 H 1.08998 * 109.49508 * 301.33679 * 25 12 11 47 47 H 1.08996 * 109.50085 * 61.40229 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0571 -0.7530 1.2340 5 6 2.8885 -1.9396 0.7044 6 6 3.3150 -1.4997 -0.7181 7 6 2.0584 -0.7550 -1.2372 8 6 1.0143 -1.7528 -1.7419 9 6 2.4324 0.2158 -2.3275 10 8 2.2963 1.4035 -2.1517 11 8 2.9167 -0.2388 -3.4939 12 6 3.2552 0.7532 -4.4987 13 6 2.0324 1.0266 -5.3775 14 6 2.3830 2.0986 -6.4142 15 7 3.5752 1.6667 -7.1564 16 6 3.5639 1.6135 -8.5247 17 1 4.2058 0.9170 -9.0434 18 6 2.7272 2.4550 -9.2451 19 7 2.2080 3.5181 -8.6684 20 14 2.3383 2.0784 -11.0329 21 1 1.1281 1.2208 -11.1062 22 1 2.0905 3.3473 -11.7635 23 1 3.4866 1.3677 -11.6503 24 6 4.7795 1.2925 -6.4027 25 6 4.4021 0.2295 -5.3661 26 1 -0.3633 0.5247 0.8836 27 1 -0.3632 0.5029 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 2.6861 -0.0943 1.8330 30 1 1.2230 -1.1188 1.8327 31 1 3.7646 -2.1021 1.3322 32 1 2.2795 -2.8425 0.6600 33 1 4.1719 -0.8274 -0.6740 34 1 3.5379 -2.3666 -1.3401 35 1 0.1038 -1.2193 -2.0148 36 1 1.4044 -2.2766 -2.6147 37 1 0.7911 -2.4740 -0.9557 38 1 3.5632 1.6765 -4.0081 39 1 1.7387 0.1093 -5.8879 40 1 1.2086 1.3773 -4.7558 41 1 2.5892 3.0421 -5.9087 42 1 1.5491 2.2260 -7.1044 43 1 1.6237 4.1062 -9.1719 44 1 5.1811 2.1703 -5.8963 45 1 5.5269 0.8881 -7.0853 46 1 5.2649 0.0129 -4.7363 47 1 4.0863 -0.6805 -5.8761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835230742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:58 Heat of formation + Delta-G solvation = -105.248337 kcal Electronic energy + Delta-G solvation = -25220.305446 eV Core-core repulsion = 21787.962618 eV Total energy + Delta-G solvation = -3432.342828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08498 -39.99889 -38.73475 -37.26351 -34.63842 -32.48789 -32.31633 -31.87475 -31.43339 -27.39942 -26.87302 -26.22824 -24.42509 -23.99408 -22.76868 -21.36811 -21.07802 -19.64516 -18.88942 -18.49235 -17.81013 -17.00784 -16.84579 -16.16944 -15.95207 -15.46125 -15.30675 -15.04375 -14.94289 -14.59446 -14.28730 -14.16562 -13.89734 -13.51895 -13.42713 -13.29739 -13.10648 -12.87626 -12.69239 -12.65285 -12.64646 -12.37228 -12.15972 -11.97911 -11.92684 -11.88043 -11.74788 -11.64571 -11.52191 -11.46082 -11.32023 -11.15329 -11.01204 -10.58577 -8.80193 -7.92376 -5.38945 1.16529 1.46680 1.48358 1.57581 1.64799 2.48887 3.23387 3.31538 3.46779 3.55279 3.67316 3.75666 3.84202 3.94666 4.12080 4.24814 4.33996 4.34753 4.36786 4.41992 4.52269 4.59574 4.61073 4.67425 4.72896 4.83142 4.84046 4.90731 4.92154 4.96478 5.00939 5.02465 5.06727 5.15373 5.20501 5.23166 5.26298 5.33600 5.33910 5.45544 5.50540 5.51851 5.61342 5.62886 6.33079 6.72762 7.07322 7.76784 8.30013 9.15428 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032297 B = 0.003361 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.754256 B = 8327.707402 C = 8605.232589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.059 0.941 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.136 4.136 9 C 0.462 3.538 10 O -0.544 6.544 11 O -0.348 6.348 12 C 0.103 3.897 13 C -0.137 4.137 14 C 0.185 3.815 15 N -0.610 5.610 16 C -0.266 4.266 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.143 3.857 25 C -0.113 4.113 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.051 0.949 41 H -0.006 1.006 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -14.550 20.082 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.055 4.055 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.434 6.434 11 O -0.264 6.264 12 C 0.049 3.951 13 C -0.177 4.177 14 C 0.058 3.942 15 N -0.334 5.334 16 C -0.396 4.396 17 H 0.093 0.907 18 C -0.247 4.247 19 N -0.584 5.584 20 Si 0.800 3.200 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 C 0.018 3.982 25 C -0.152 4.152 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.012 0.988 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.510 -14.068 20.011 24.467 hybrid contribution -0.375 1.125 -1.285 1.748 sum -0.885 -12.944 18.726 22.782 Atomic orbital electron populations 1.21955 0.93814 1.03014 1.01246 1.21797 0.96981 0.99092 0.92832 0.92251 1.22217 1.00313 0.96955 0.95748 1.22357 1.00455 0.98336 0.93970 1.22612 0.94077 0.99825 0.98207 1.21627 0.99475 0.94144 0.90250 1.21908 0.96760 0.97931 1.02638 1.24520 0.72453 0.89335 0.83019 1.90622 1.51518 1.20055 1.81172 1.86543 1.74149 1.41431 1.24259 1.22609 0.96195 0.90264 0.86063 1.22387 0.96722 1.00911 0.97658 1.20464 0.90781 0.91442 0.91489 1.44378 1.08548 1.78040 1.02420 1.19594 1.23057 1.14473 0.82440 0.90692 1.25890 1.01831 0.94839 1.02186 1.70199 1.36182 1.13850 1.38135 0.85194 0.78488 0.76658 0.79675 1.21163 1.22278 1.18857 1.21062 0.89329 0.94717 0.93127 1.22027 0.96404 0.99950 0.96783 0.91577 0.94838 0.89953 0.91627 0.89427 0.89901 0.89306 0.92265 0.89109 0.92445 0.91631 0.88012 0.92318 0.91476 0.93078 0.98806 0.91872 0.94017 0.96614 0.90594 0.89093 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.70 71.99 0.55 -2.00 16 2 C -0.09 -1.78 2.80 -10.07 -0.03 -1.81 16 3 H 0.06 1.58 6.85 -2.39 -0.02 1.56 16 4 C -0.11 -1.54 6.46 31.32 0.20 -1.34 16 5 C -0.11 -1.28 6.47 31.67 0.20 -1.08 16 6 C -0.11 -1.86 5.80 31.93 0.19 -1.67 16 7 C -0.05 -1.17 0.75 -51.81 -0.04 -1.21 16 8 C -0.14 -2.40 7.17 71.98 0.52 -1.89 16 9 C 0.46 14.75 6.60 71.24 0.47 15.22 16 10 O -0.54 -21.28 14.64 21.96 0.32 -20.95 16 11 O -0.35 -11.58 9.73 -51.38 -0.50 -12.08 16 12 C 0.10 3.93 2.41 30.62 0.07 4.01 16 13 C -0.14 -5.86 5.72 30.67 0.18 -5.69 16 14 C 0.18 9.53 5.31 86.36 0.46 9.99 16 15 N -0.61 -31.54 2.99 -699.10 -2.09 -33.64 16 16 C -0.27 -14.72 9.58 84.03 0.81 -13.91 16 17 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 18 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 19 N -0.94 -56.74 11.19 21.65 0.24 -56.49 16 20 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 C 0.14 6.00 6.52 86.36 0.56 6.56 16 25 C -0.11 -3.93 5.74 30.67 0.18 -3.75 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 0.74 7.75 -2.39 -0.02 0.73 16 28 H 0.08 1.09 6.59 -2.39 -0.02 1.08 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.87 7.67 -2.39 -0.02 0.85 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.71 7.64 -2.39 -0.02 0.69 16 33 H 0.06 1.15 8.05 -2.38 -0.02 1.13 16 34 H 0.09 1.36 8.06 -2.38 -0.02 1.34 16 35 H 0.06 1.11 6.66 -2.38 -0.02 1.10 16 36 H 0.06 1.23 8.07 -2.38 -0.02 1.21 16 37 H 0.10 1.17 6.91 -2.39 -0.02 1.16 16 38 H 0.06 2.46 7.16 -2.39 -0.02 2.45 16 39 H 0.07 2.81 8.14 -2.38 -0.02 2.80 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 42 H 0.06 3.63 6.04 -2.39 -0.01 3.62 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 2.97 7.93 -2.39 -0.02 2.95 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -68.42 358.25 5.66 -62.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.92 Total: 14.40 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.73 Total: -1.11 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -1.85 Total: -90.13 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.18 Total: -33.03 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.42 5.66 -62.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835230742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.484 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds