Wall clock time and date at job start Tue Mar 31 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.50703 * 109.47076 * 240.00216 * 2 1 3 5 5 O 1.20830 * 119.99735 * 237.32196 * 4 2 1 6 6 O 1.34226 * 120.00146 * 57.31944 * 4 2 1 7 7 C 1.45201 * 116.99929 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46976 * 179.97438 * 7 6 4 9 9 C 1.50703 * 115.54915 * 34.27238 * 8 7 6 10 10 H 1.08006 * 119.99953 * 264.64407 * 9 8 7 11 11 C 1.37873 * 119.99991 * 84.65148 * 9 8 7 12 12 N 1.31517 * 120.00163 * 1.90498 * 11 9 8 13 13 Si 1.86805 * 120.00044 * 181.91222 * 11 9 8 14 14 H 1.48504 * 109.47090 * 59.99322 * 13 11 9 15 15 H 1.48496 * 109.47214 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46821 * 299.99825 * 13 11 9 17 17 C 1.52998 * 117.50007 * 248.56128 * 8 7 6 18 18 C 1.52998 * 60.00148 * 252.51261 * 17 8 7 19 19 N 1.46897 * 109.47029 * 119.99920 * 2 1 3 20 20 C 1.48559 * 111.00538 * 283.06446 * 19 2 1 21 21 H 1.09004 * 110.40615 * 40.26141 * 20 19 2 22 22 C 1.52996 * 110.41154 * 277.94321 * 20 19 2 23 23 C 1.54377 * 104.59636 * 159.04054 * 20 19 2 24 24 C 1.54261 * 105.06135 * 336.14749 * 23 20 19 25 25 C 1.48560 * 111.00195 * 38.48546 * 19 2 1 26 26 H 1.09001 * 110.41005 * 319.74240 * 25 19 2 27 27 C 1.53009 * 110.41194 * 82.17592 * 25 19 2 28 28 H 1.08994 * 109.46927 * 50.18603 * 1 2 3 29 29 H 1.09005 * 109.46922 * 170.18614 * 1 2 3 30 30 H 1.08996 * 109.46710 * 290.18604 * 1 2 3 31 31 H 1.09000 * 109.47464 * 60.00007 * 7 6 4 32 32 H 1.08998 * 109.46959 * 299.99535 * 7 6 4 33 33 H 0.96999 * 119.99962 * 179.97438 * 12 11 9 34 34 H 1.08996 * 117.49799 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49688 * 145.01980 * 17 8 7 36 36 H 1.09004 * 117.49730 * 252.51265 * 18 17 8 37 37 H 1.08999 * 117.50018 * 107.48831 * 18 17 8 38 38 H 1.08999 * 109.47830 * 59.99216 * 22 20 19 39 39 H 1.09005 * 109.47371 * 179.97438 * 22 20 19 40 40 H 1.09007 * 109.46879 * 299.99454 * 22 20 19 41 41 H 1.08998 * 110.32593 * 95.04665 * 23 20 19 42 42 H 1.09006 * 110.32288 * 217.25545 * 23 20 19 43 43 H 1.08994 * 110.32350 * 118.89848 * 24 23 20 44 44 H 1.08995 * 110.32469 * 241.10613 * 24 23 20 45 45 H 1.08998 * 109.46660 * 50.58944 * 27 25 19 46 46 H 1.09002 * 109.47088 * 170.58596 * 27 25 19 47 47 H 1.08998 * 109.47016 * 290.58964 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7664 -1.6638 -1.1203 6 8 1.6643 -0.2840 -2.4489 7 6 2.1859 -1.0165 -3.5890 8 6 1.6607 -0.3891 -4.8818 9 6 1.4807 1.1069 -4.8519 10 1 0.5138 1.5300 -4.6226 11 6 2.5503 1.9353 -5.1175 12 7 3.7184 1.4203 -5.4336 13 14 2.3404 3.7894 -5.0281 14 1 1.9200 4.1744 -3.6569 15 1 3.6299 4.4498 -5.3539 16 1 1.3044 4.2177 -6.0020 17 6 0.6649 -1.2045 -5.7090 18 6 2.1011 -1.0214 -6.2036 19 7 2.0197 -0.6925 1.1994 20 6 1.9016 0.1742 2.4002 21 1 0.9628 0.7279 2.3785 22 6 3.0867 1.1386 2.4808 23 6 1.9206 -0.8071 3.5917 24 6 1.4416 -2.1532 3.0101 25 6 1.1736 -1.8718 1.5160 26 1 0.1210 -1.6385 1.3559 27 6 1.5908 -3.0721 0.6637 28 1 -0.3633 0.6580 -0.7893 29 1 -0.3633 -1.0127 -0.1752 30 1 -0.3632 0.3546 0.9645 31 1 1.8621 -2.0557 -3.5322 32 1 3.2750 -0.9742 -3.5806 33 1 4.4708 2.0032 -5.6208 34 1 0.3836 -2.1878 -5.3320 35 1 -0.1209 -0.6590 -6.2317 36 1 2.2602 -0.3554 -7.0517 37 1 2.7650 -1.8843 -6.1521 38 1 3.1054 1.7667 1.5902 39 1 2.9845 1.7666 3.3659 40 1 4.0144 0.5696 2.5437 41 1 2.9319 -0.9037 3.9866 42 1 1.2393 -0.4682 4.3722 43 1 2.2178 -2.9105 3.1194 44 1 0.5254 -2.4749 3.5050 45 1 2.6688 -3.2144 0.7397 46 1 1.0802 -3.9665 1.0210 47 1 1.3207 -2.8906 -0.3765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849732740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:14 Heat of formation + Delta-G solvation = -51.472381 kcal Electronic energy + Delta-G solvation = -25522.389740 eV Core-core repulsion = 22092.378812 eV Total energy + Delta-G solvation = -3430.010928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45530 -38.88616 -36.65876 -35.07934 -33.66059 -32.61473 -31.90508 -29.05363 -27.98743 -26.90248 -25.32285 -24.31931 -23.85408 -21.17151 -20.84066 -20.35899 -19.25244 -18.90456 -16.90337 -16.68977 -16.28652 -15.64606 -15.02213 -14.84309 -14.69084 -14.57999 -13.97138 -13.65256 -13.35038 -12.96404 -12.83046 -12.71518 -12.42848 -12.26537 -12.10871 -11.83398 -11.67974 -11.59865 -11.42172 -11.29698 -11.03177 -10.92150 -10.87563 -10.76226 -10.57862 -10.51082 -10.40711 -10.24673 -9.74326 -9.60965 -9.35335 -8.93874 -8.42302 -8.39111 -8.09061 -6.01018 -4.05740 2.94777 3.23653 3.31997 3.36951 3.39088 4.04078 4.42510 4.45203 4.67556 4.86450 5.01241 5.08817 5.15033 5.22978 5.27145 5.29342 5.32953 5.40076 5.50612 5.59223 5.62577 5.74437 5.77385 5.80772 5.84767 5.89953 6.02779 6.07485 6.10364 6.15884 6.20539 6.22610 6.28474 6.36583 6.50929 6.62569 6.69328 6.80390 6.96461 7.01778 7.04356 7.22112 7.42684 7.57926 7.90318 8.39414 8.67470 8.93617 9.58905 11.08541 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.004687 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.295804 B = 5972.584722 C = 6893.751689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.114 0.886 4 C 0.455 3.545 5 O -0.500 6.500 6 O -0.324 6.324 7 C 0.120 3.880 8 C 0.035 3.965 9 C -0.478 4.478 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.883 5.883 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.211 4.211 18 C -0.144 4.144 19 N -0.482 5.482 20 C 0.057 3.943 21 H 0.055 0.945 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.119 4.119 25 C 0.049 3.951 26 H 0.063 0.937 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 -3.932 15.835 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 H 0.132 0.868 4 C 0.296 3.704 5 O -0.388 6.388 6 O -0.238 6.238 7 C 0.046 3.954 8 C 0.035 3.965 9 C -0.516 4.516 10 H 0.079 0.921 11 C -0.133 4.133 12 N -0.520 5.520 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.248 4.248 18 C -0.182 4.182 19 N -0.207 5.207 20 C -0.051 4.051 21 H 0.073 0.927 22 C -0.196 4.196 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.058 4.058 26 H 0.080 0.920 27 C -0.187 4.187 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.344 -4.312 15.634 16.789 hybrid contribution -0.662 1.187 0.011 1.360 sum -5.006 -3.124 15.644 16.720 Atomic orbital electron populations 1.22321 0.94635 1.03493 1.03132 1.21265 0.94758 0.98812 0.88178 0.86837 1.23148 0.79011 0.82652 0.85590 1.90595 1.33873 1.26840 1.87502 1.86591 1.66908 1.56536 1.13797 1.22637 0.98256 0.91268 0.83190 1.18784 0.97255 0.94178 0.86293 1.20211 0.95916 0.87781 1.47719 0.92132 1.24962 0.95251 0.98473 0.94609 1.69987 1.00892 1.34965 1.46190 0.86684 0.77228 0.85614 0.78620 1.20152 1.21364 1.20261 1.23125 0.93748 0.99929 1.07977 1.22522 0.94338 1.00964 1.00353 1.65243 1.49538 1.05359 1.00598 1.22658 0.98244 0.94179 0.89994 0.92707 1.21749 0.98054 0.98376 1.01461 1.22327 1.01944 0.94669 0.96628 1.22339 1.01157 0.97669 0.94550 1.22859 0.95924 0.92087 0.94962 0.91963 1.21804 1.02641 0.94729 0.99536 0.89900 0.91600 0.91729 0.94386 0.91681 0.93008 0.91684 0.90148 0.89323 0.91814 0.92453 0.92336 0.91663 0.90867 0.91534 0.90914 0.91647 0.91136 0.93700 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 7.66 37.16 0.28 -2.04 16 2 C 0.08 1.24 2.75 -68.86 -0.19 1.05 16 3 H 0.11 1.73 7.05 -51.93 -0.37 1.37 16 4 C 0.45 9.03 6.43 36.01 0.23 9.26 16 5 O -0.50 -10.71 12.61 -18.75 -0.24 -10.95 16 6 O -0.32 -7.33 9.36 -39.25 -0.37 -7.69 16 7 C 0.12 2.85 5.59 37.16 0.21 3.06 16 8 C 0.04 0.88 1.87 -155.66 -0.29 0.59 16 9 C -0.48 -12.95 8.11 -34.44 -0.28 -13.23 16 10 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 11 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 12 N -0.88 -25.07 12.73 55.43 0.71 -24.37 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.21 -4.58 9.88 -26.73 -0.26 -4.84 16 18 C -0.14 -3.38 9.26 -26.73 -0.25 -3.63 16 19 N -0.48 -6.78 4.37 -207.87 -0.91 -7.69 16 20 C 0.06 0.64 2.71 -66.07 -0.18 0.46 16 21 H 0.05 0.57 6.64 -51.93 -0.34 0.23 16 22 C -0.14 -1.50 9.36 37.16 0.35 -1.15 16 23 C -0.12 -1.11 6.55 -25.35 -0.17 -1.28 16 24 C -0.12 -1.21 6.55 -25.35 -0.17 -1.37 16 25 C 0.05 0.62 2.41 -66.07 -0.16 0.47 16 26 H 0.06 0.75 5.23 -51.93 -0.27 0.47 16 27 C -0.13 -1.85 7.70 37.16 0.29 -1.56 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.87 6.68 -51.93 -0.35 0.52 16 30 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 31 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.06 1.67 8.13 -51.93 -0.42 1.25 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 1.27 8.05 -51.93 -0.42 0.86 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.67 7.25 -51.93 -0.38 0.30 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.75 8.10 -51.92 -0.42 0.33 16 41 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.75 7.86 -51.93 -0.41 0.35 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.13 7.80 -51.93 -0.41 0.72 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.99 5.83 -51.93 -0.30 0.69 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -29.54 364.38 -9.18 -38.72 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.17 Total: 2.83 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.68 Total: -12.42 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.20 Total: -32.06 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.60 Total: -18.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.54 -9.18 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.752 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds