Wall clock time and date at job start Tue Mar 31 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.50703 * 109.47076 * 240.00216 * 2 1 3 5 5 O 1.20830 * 119.99735 * 237.32196 * 4 2 1 6 6 O 1.34226 * 120.00146 * 57.31944 * 4 2 1 7 7 C 1.45201 * 116.99929 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46976 * 179.97438 * 7 6 4 9 9 C 1.50703 * 115.54915 * 34.27238 * 8 7 6 10 10 H 1.08006 * 119.99953 * 264.64407 * 9 8 7 11 11 C 1.37873 * 119.99991 * 84.65148 * 9 8 7 12 12 N 1.31517 * 120.00163 * 1.90498 * 11 9 8 13 13 Si 1.86805 * 120.00044 * 181.91222 * 11 9 8 14 14 H 1.48504 * 109.47090 * 59.99322 * 13 11 9 15 15 H 1.48496 * 109.47214 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46821 * 299.99825 * 13 11 9 17 17 C 1.52998 * 117.50007 * 248.56128 * 8 7 6 18 18 C 1.52998 * 60.00148 * 252.51261 * 17 8 7 19 19 N 1.46897 * 109.47029 * 119.99920 * 2 1 3 20 20 C 1.48559 * 111.00538 * 283.06446 * 19 2 1 21 21 H 1.09004 * 110.40615 * 40.26141 * 20 19 2 22 22 C 1.52996 * 110.41154 * 277.94321 * 20 19 2 23 23 C 1.54377 * 104.59636 * 159.04054 * 20 19 2 24 24 C 1.54261 * 105.06135 * 336.14749 * 23 20 19 25 25 C 1.48560 * 111.00195 * 38.48546 * 19 2 1 26 26 H 1.09001 * 110.41005 * 319.74240 * 25 19 2 27 27 C 1.53009 * 110.41194 * 82.17592 * 25 19 2 28 28 H 1.08994 * 109.46927 * 50.18603 * 1 2 3 29 29 H 1.09005 * 109.46922 * 170.18614 * 1 2 3 30 30 H 1.08996 * 109.46710 * 290.18604 * 1 2 3 31 31 H 1.09000 * 109.47464 * 60.00007 * 7 6 4 32 32 H 1.08998 * 109.46959 * 299.99535 * 7 6 4 33 33 H 0.96999 * 119.99962 * 179.97438 * 12 11 9 34 34 H 1.08996 * 117.49799 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49688 * 145.01980 * 17 8 7 36 36 H 1.09004 * 117.49730 * 252.51265 * 18 17 8 37 37 H 1.08999 * 117.50018 * 107.48831 * 18 17 8 38 38 H 1.08999 * 109.47830 * 59.99216 * 22 20 19 39 39 H 1.09005 * 109.47371 * 179.97438 * 22 20 19 40 40 H 1.09007 * 109.46879 * 299.99454 * 22 20 19 41 41 H 1.08998 * 110.32593 * 95.04665 * 23 20 19 42 42 H 1.09006 * 110.32288 * 217.25545 * 23 20 19 43 43 H 1.08994 * 110.32350 * 118.89848 * 24 23 20 44 44 H 1.08995 * 110.32469 * 241.10613 * 24 23 20 45 45 H 1.08998 * 109.46660 * 50.58944 * 27 25 19 46 46 H 1.09002 * 109.47088 * 170.58596 * 27 25 19 47 47 H 1.08998 * 109.47016 * 290.58964 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7664 -1.6638 -1.1203 6 8 1.6643 -0.2840 -2.4489 7 6 2.1859 -1.0165 -3.5890 8 6 1.6607 -0.3891 -4.8818 9 6 1.4807 1.1069 -4.8519 10 1 0.5138 1.5300 -4.6226 11 6 2.5503 1.9353 -5.1175 12 7 3.7184 1.4203 -5.4336 13 14 2.3404 3.7894 -5.0281 14 1 1.9200 4.1744 -3.6569 15 1 3.6299 4.4498 -5.3539 16 1 1.3044 4.2177 -6.0020 17 6 0.6649 -1.2045 -5.7090 18 6 2.1011 -1.0214 -6.2036 19 7 2.0197 -0.6925 1.1994 20 6 1.9016 0.1742 2.4002 21 1 0.9628 0.7279 2.3785 22 6 3.0867 1.1386 2.4808 23 6 1.9206 -0.8071 3.5917 24 6 1.4416 -2.1532 3.0101 25 6 1.1736 -1.8718 1.5160 26 1 0.1210 -1.6385 1.3559 27 6 1.5908 -3.0721 0.6637 28 1 -0.3633 0.6580 -0.7893 29 1 -0.3633 -1.0127 -0.1752 30 1 -0.3632 0.3546 0.9645 31 1 1.8621 -2.0557 -3.5322 32 1 3.2750 -0.9742 -3.5806 33 1 4.4708 2.0032 -5.6208 34 1 0.3836 -2.1878 -5.3320 35 1 -0.1209 -0.6590 -6.2317 36 1 2.2602 -0.3554 -7.0517 37 1 2.7650 -1.8843 -6.1521 38 1 3.1054 1.7667 1.5902 39 1 2.9845 1.7666 3.3659 40 1 4.0144 0.5696 2.5437 41 1 2.9319 -0.9037 3.9866 42 1 1.2393 -0.4682 4.3722 43 1 2.2178 -2.9105 3.1194 44 1 0.5254 -2.4749 3.5050 45 1 2.6688 -3.2144 0.7397 46 1 1.0802 -3.9665 1.0210 47 1 1.3207 -2.8906 -0.3765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849732740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:13 Heat of formation + Delta-G solvation = -67.164384 kcal Electronic energy + Delta-G solvation = -25523.070196 eV Core-core repulsion = 22092.378812 eV Total energy + Delta-G solvation = -3430.691384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77454 -40.22460 -38.46202 -36.81377 -34.73142 -33.97924 -33.56024 -30.05798 -29.04515 -28.61113 -27.33259 -25.64768 -24.73140 -22.97948 -22.19121 -21.26145 -21.19386 -20.08487 -18.54426 -18.11415 -17.72479 -17.37778 -16.58208 -16.47921 -15.93835 -15.61084 -15.60602 -14.92649 -14.70578 -14.27346 -14.13324 -13.91749 -13.73429 -13.59774 -13.38493 -13.25334 -12.93347 -12.85141 -12.79488 -12.76395 -12.52608 -12.39004 -12.28766 -12.12264 -12.04969 -11.74078 -11.58622 -11.51978 -11.30961 -11.26140 -11.01753 -10.87464 -10.43537 -9.99055 -9.41876 -8.09087 -6.19274 1.37655 1.43018 1.44378 1.51458 1.79084 2.44715 2.95315 3.20805 3.37751 3.56160 3.68562 3.89192 3.93426 4.07225 4.12984 4.18457 4.19064 4.36291 4.40604 4.42051 4.48345 4.61179 4.61922 4.65745 4.71864 4.76210 4.82907 4.87609 4.89847 4.93237 4.97140 5.06011 5.11996 5.14344 5.16182 5.28021 5.34836 5.35518 5.39146 5.47775 5.60021 5.76859 5.83743 5.96693 6.02248 6.37958 6.83161 7.03095 7.48253 8.99837 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.004687 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.295804 B = 5972.584722 C = 6893.751689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 H 0.114 0.886 4 C 0.447 3.553 5 O -0.520 6.520 6 O -0.339 6.339 7 C 0.132 3.868 8 C 0.002 3.998 9 C -0.488 4.488 10 H 0.055 0.945 11 C 0.023 3.977 12 N -0.914 5.914 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.288 1.288 16 H -0.269 1.269 17 C -0.181 4.181 18 C -0.148 4.148 19 N -0.505 5.505 20 C 0.054 3.946 21 H 0.070 0.930 22 C -0.138 4.138 23 C -0.112 4.112 24 C -0.114 4.114 25 C 0.046 3.954 26 H 0.075 0.925 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.258 0.742 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.066 0.934 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -3.495 18.042 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 H 0.132 0.868 4 C 0.290 3.710 5 O -0.410 6.410 6 O -0.254 6.254 7 C 0.058 3.942 8 C 0.001 3.999 9 C -0.526 4.526 10 H 0.073 0.927 11 C -0.177 4.177 12 N -0.552 5.552 13 Si 0.774 3.226 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.194 1.194 17 C -0.218 4.218 18 C -0.185 4.185 19 N -0.231 5.231 20 C -0.053 4.053 21 H 0.088 0.912 22 C -0.195 4.195 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.062 4.062 26 H 0.093 0.907 27 C -0.181 4.181 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.285 -3.876 17.854 19.321 hybrid contribution -0.036 0.983 -0.654 1.181 sum -6.322 -2.893 17.200 18.552 Atomic orbital electron populations 1.22272 0.92480 1.03358 1.04553 1.21270 0.96300 0.98040 0.86753 0.86816 1.24179 0.78437 0.82574 0.85815 1.90581 1.34818 1.27950 1.87617 1.86592 1.67247 1.56944 1.14607 1.22331 0.96164 0.92034 0.83685 1.18931 0.99925 0.93874 0.87150 1.20454 0.95656 0.89274 1.47168 0.92651 1.25671 0.94981 1.02577 0.94459 1.70111 1.01496 1.36195 1.47406 0.85760 0.77199 0.80710 0.78915 1.19501 1.21387 1.19357 1.23132 0.92646 1.00482 1.05519 1.22427 0.96214 1.00866 0.99023 1.65210 1.50397 1.06475 1.01025 1.22809 0.98858 0.94341 0.89254 0.91182 1.21757 0.97522 0.98341 1.01909 1.22334 1.02661 0.93629 0.96342 1.22326 1.02186 0.98004 0.92693 1.22938 0.96209 0.90723 0.96304 0.90738 1.21711 1.01123 0.96908 0.98361 0.90801 0.91765 0.88616 0.93105 0.95029 0.93309 0.89010 0.89597 0.91324 0.90836 0.93975 0.89825 0.93026 0.90999 0.88862 0.91574 0.89209 0.93697 0.91468 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.66 71.98 0.55 -3.55 16 2 C 0.09 2.64 2.75 44.17 0.12 2.76 16 3 H 0.11 3.43 7.05 -2.39 -0.02 3.42 16 4 C 0.45 18.16 6.43 71.24 0.46 18.61 16 5 O -0.52 -23.14 12.61 21.95 0.28 -22.86 16 6 O -0.34 -15.68 9.36 -51.38 -0.48 -16.16 16 7 C 0.13 6.42 5.59 71.98 0.40 6.82 16 8 C 0.00 0.08 1.87 -52.93 -0.10 -0.02 16 9 C -0.49 -26.66 8.11 25.60 0.21 -26.45 16 10 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.02 1.25 5.43 84.65 0.46 1.71 16 12 N -0.91 -53.15 12.73 21.45 0.27 -52.87 16 13 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.18 -7.66 9.88 30.59 0.30 -7.36 16 18 C -0.15 -6.98 9.26 30.59 0.28 -6.69 16 19 N -0.51 -13.64 4.37 -811.58 -3.55 -17.19 16 20 C 0.05 1.08 2.71 45.06 0.12 1.20 16 21 H 0.07 1.19 6.64 -2.38 -0.02 1.17 16 22 C -0.14 -2.76 9.36 71.98 0.67 -2.08 16 23 C -0.11 -1.74 6.55 31.49 0.21 -1.53 16 24 C -0.11 -1.98 6.55 31.49 0.21 -1.77 16 25 C 0.05 1.07 2.41 45.06 0.11 1.18 16 26 H 0.07 1.57 5.23 -2.39 -0.01 1.56 16 27 C -0.12 -3.49 7.70 71.99 0.55 -2.94 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.58 6.68 -2.38 -0.02 1.57 16 30 H 0.10 1.73 6.57 -2.39 -0.02 1.71 16 31 H 0.05 2.27 7.89 -2.39 -0.02 2.26 16 32 H 0.03 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.09 3.39 8.05 -2.39 -0.02 3.37 16 35 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.07 3.48 8.14 -2.38 -0.02 3.46 16 37 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.04 0.95 7.25 -2.39 -0.02 0.94 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 41 H 0.07 1.15 7.83 -2.39 -0.02 1.13 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 1.24 7.86 -2.39 -0.02 1.22 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.04 1.47 7.80 -2.39 -0.02 1.45 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.03 1.01 5.83 -2.39 -0.01 0.99 16 Total: -1.00 -65.31 364.38 4.04 -61.27 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.93 Total: 22.38 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.56 Total: -20.09 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -3.27 Total: -70.06 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.20 Total: -39.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.31 4.04 -61.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.893 kcal (2) G-P(sol) polarization free energy of solvation -65.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds