Wall clock time and date at job start Tue Mar 31 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47396 * 2 1 4 4 C 1.50703 * 109.46989 * 240.00117 * 2 1 3 5 5 O 1.20832 * 120.00066 * 244.55384 * 4 2 1 6 6 O 1.34228 * 119.99926 * 64.55403 * 4 2 1 7 7 C 1.45195 * 117.00015 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47077 * 179.97438 * 7 6 4 9 9 C 1.50693 * 115.55017 * 56.40288 * 8 7 6 10 10 H 1.08007 * 119.99752 * 272.41139 * 9 8 7 11 11 C 1.37872 * 120.00413 * 92.41115 * 9 8 7 12 12 N 1.31513 * 119.99837 * 4.23536 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 184.23961 * 11 9 8 14 14 H 1.48505 * 109.47080 * 59.99953 * 13 11 9 15 15 H 1.48502 * 109.47160 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47169 * 300.00056 * 13 11 9 17 17 C 1.53001 * 117.49711 * 270.72879 * 8 7 6 18 18 C 1.53000 * 117.49645 * 202.06969 * 8 7 6 19 19 N 1.46908 * 109.47395 * 120.00498 * 2 1 3 20 20 C 1.47846 * 110.99731 * 67.47007 * 19 2 1 21 21 H 1.08993 * 110.37464 * 27.53422 * 20 19 2 22 22 C 1.53006 * 110.37074 * 265.19087 * 20 19 2 23 23 C 1.54912 * 104.79483 * 146.36874 * 20 19 2 24 24 C 1.55142 * 101.64917 * 322.92527 * 23 20 19 25 25 C 1.47441 * 111.00216 * 188.31333 * 19 2 1 26 26 H 1.09004 * 109.88784 * 117.33132 * 25 19 2 27 27 C 1.53005 * 109.88764 * 356.31032 * 25 19 2 28 28 H 1.09001 * 109.47281 * 172.17470 * 1 2 3 29 29 H 1.09000 * 109.47326 * 52.16868 * 1 2 3 30 30 H 1.09005 * 109.47042 * 292.16542 * 1 2 3 31 31 H 1.09000 * 109.47303 * 299.99964 * 7 6 4 32 32 H 1.09006 * 109.47505 * 60.00145 * 7 6 4 33 33 H 0.97001 * 120.00191 * 179.97438 * 12 11 9 34 34 H 1.08996 * 117.50198 * 0.02562 * 17 8 7 35 35 H 1.09000 * 117.49354 * 145.01826 * 17 8 7 36 36 H 1.08998 * 117.49955 * 214.97904 * 18 8 7 37 37 H 1.08997 * 117.50406 * 359.97438 * 18 8 7 38 38 H 1.08999 * 109.46945 * 65.49342 * 22 20 19 39 39 H 1.09002 * 109.47006 * 185.48412 * 22 20 19 40 40 H 1.08991 * 109.47164 * 305.49169 * 22 20 19 41 41 H 1.08992 * 110.98902 * 204.83819 * 23 20 19 42 42 H 1.09000 * 110.98757 * 81.01267 * 23 20 19 43 43 H 1.08995 * 110.70914 * 277.27266 * 24 23 20 44 44 H 1.09004 * 110.85183 * 154.10109 * 24 23 20 45 45 H 1.09004 * 109.47250 * 50.13432 * 27 25 19 46 46 H 1.08998 * 109.46921 * 170.13475 * 27 25 19 47 47 H 1.09001 * 109.46788 * 290.13664 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6575 -1.7386 -1.1216 6 8 1.7851 -0.2009 -2.4475 7 6 2.2996 -0.9381 -3.5877 8 6 1.9211 -0.2097 -4.8789 9 6 2.3755 1.2240 -4.9734 10 1 1.7540 2.0145 -4.5792 11 6 3.5844 1.5267 -5.5631 12 7 4.3025 0.5743 -6.1171 13 14 4.2026 3.2894 -5.5750 14 1 4.3545 3.7701 -4.1781 15 1 5.5162 3.3486 -6.2650 16 1 3.2283 4.1508 -6.2918 17 6 0.5836 -0.5712 -5.5279 18 6 1.8952 -1.0292 -6.1706 19 7 2.0197 -0.6926 1.1994 20 6 1.6977 -2.1346 1.1471 21 1 1.6271 -2.4704 0.1125 22 6 0.3900 -2.4157 1.8900 23 6 2.8835 -2.8309 1.8604 24 6 4.0821 -1.9620 1.3964 25 6 3.4800 -0.5424 1.3372 26 1 3.7122 -0.0023 2.2551 27 6 4.0413 0.2149 0.1319 28 1 -0.3634 -1.0181 -0.1399 29 1 -0.3634 0.6303 -0.8117 30 1 -0.3633 0.3877 0.9518 31 1 3.3849 -1.0090 -3.5148 32 1 1.8699 -1.9398 -3.5967 33 1 5.1529 0.7873 -6.5324 34 1 -0.0269 -1.3277 -5.0348 35 1 0.0324 0.2279 -6.0235 36 1 2.2064 -0.5312 -7.0889 37 1 2.1482 -2.0871 -6.1008 38 1 -0.4357 -1.9323 1.3678 39 1 0.2167 -3.4912 1.9265 40 1 0.4572 -2.0238 2.9048 41 1 2.9932 -3.8607 1.5207 42 1 2.7668 -2.7888 2.9433 43 1 4.4270 -2.2757 0.4113 44 1 4.8960 -2.0054 2.1202 45 1 3.4621 1.1244 -0.0277 46 1 5.0828 0.4756 0.3196 47 1 3.9787 -0.4160 -0.7547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849732741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:17 Heat of formation + Delta-G solvation = -32.999738 kcal Electronic energy + Delta-G solvation = -26045.865515 eV Core-core repulsion = 22616.655622 eV Total energy + Delta-G solvation = -3429.209894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26654 -38.58698 -36.64292 -35.22696 -33.62838 -32.79252 -31.94038 -28.94166 -28.00278 -27.03407 -25.38473 -24.46938 -23.13437 -21.18226 -20.90633 -20.69040 -19.37433 -18.94855 -17.12532 -16.61761 -16.43997 -15.89266 -15.46886 -14.94459 -14.65499 -14.32375 -13.97396 -13.39606 -13.33127 -12.95345 -12.87653 -12.66313 -12.50728 -12.29296 -12.02979 -11.80021 -11.60736 -11.57224 -11.46773 -11.08846 -10.98863 -10.88031 -10.80695 -10.69223 -10.57369 -10.42907 -10.25642 -10.22760 -9.93220 -9.79421 -9.54327 -8.98875 -8.45255 -8.27458 -8.08708 -6.07363 -4.14139 2.61961 3.27780 3.30883 3.33176 3.36055 3.86602 4.36966 4.69515 4.75091 5.00885 5.06455 5.18443 5.19548 5.22964 5.30154 5.42788 5.46957 5.57394 5.59894 5.71627 5.76302 5.80454 5.83208 5.87247 5.93356 5.98223 6.04032 6.12465 6.16401 6.19078 6.24887 6.31420 6.33944 6.45579 6.46975 6.52944 6.63927 6.74157 7.02206 7.04480 7.07660 7.19025 7.34886 7.56655 7.84143 8.29668 8.41155 8.87808 9.51561 11.00213 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.004880 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.584953 B = 5736.686515 C = 6252.357642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.122 0.878 4 C 0.435 3.565 5 O -0.519 6.519 6 O -0.331 6.331 7 C 0.116 3.884 8 C 0.030 3.970 9 C -0.485 4.485 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.883 5.883 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.210 4.210 18 C -0.133 4.133 19 N -0.494 5.494 20 C 0.042 3.958 21 H 0.098 0.902 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.131 4.131 25 C 0.074 3.926 26 H 0.083 0.917 27 C -0.202 4.202 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 -3.945 14.184 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 H 0.140 0.860 4 C 0.279 3.721 5 O -0.412 6.412 6 O -0.244 6.244 7 C 0.042 3.958 8 C 0.029 3.971 9 C -0.523 4.523 10 H 0.080 0.920 11 C -0.135 4.135 12 N -0.520 5.520 13 Si 0.719 3.281 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.247 4.247 18 C -0.170 4.170 19 N -0.218 5.218 20 C -0.065 4.065 21 H 0.115 0.885 22 C -0.199 4.199 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.034 4.034 26 H 0.101 0.899 27 C -0.259 4.259 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.435 -4.031 14.476 15.668 hybrid contribution 1.115 0.435 -0.815 1.448 sum -3.320 -3.596 13.661 14.512 Atomic orbital electron populations 1.21876 0.91621 1.02840 1.03442 1.21872 0.97641 0.99855 0.84042 0.86017 1.24831 0.76284 0.84158 0.86834 1.90520 1.38602 1.24834 1.87199 1.86599 1.70425 1.52859 1.14526 1.22852 0.98263 0.91769 0.82868 1.18794 0.94921 0.95822 0.87530 1.20307 1.03725 0.89800 1.38473 0.91974 1.25008 0.96698 0.97156 0.94597 1.70001 1.13318 1.32103 1.36547 0.86667 0.78043 0.85025 0.78357 1.20117 1.21297 1.20113 1.23086 0.91693 1.02625 1.07281 1.22480 0.98465 0.97192 0.98903 1.64166 1.12995 1.12205 1.32404 1.23117 0.94839 0.86836 1.01692 0.88507 1.21932 0.96864 1.00443 1.00710 1.22571 0.94458 0.98745 0.99529 1.22803 0.97475 0.94485 1.02122 1.22308 0.86465 0.96345 0.98274 0.89937 1.22977 1.01655 1.01361 0.99937 0.92177 0.90635 0.90516 0.91604 0.94306 0.92924 0.91839 0.90109 0.88650 0.92020 0.92299 0.92877 0.92447 0.91351 0.91568 0.90257 0.91811 0.91608 0.92119 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.10 37.15 0.30 -1.43 16 2 C 0.08 1.11 2.43 -68.86 -0.17 0.94 16 3 H 0.12 1.72 5.96 -51.93 -0.31 1.41 16 4 C 0.44 7.86 4.35 36.01 0.16 8.02 16 5 O -0.52 -9.92 9.53 -18.75 -0.18 -10.10 16 6 O -0.33 -6.98 9.98 -39.25 -0.39 -7.37 16 7 C 0.12 2.66 5.33 37.16 0.20 2.86 16 8 C 0.03 0.73 1.88 -155.66 -0.29 0.44 16 9 C -0.49 -13.05 8.65 -34.45 -0.30 -13.35 16 10 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 11 C 0.07 1.84 5.41 -17.82 -0.10 1.75 16 12 N -0.88 -24.61 12.02 55.43 0.67 -23.94 16 13 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.21 -4.57 9.93 -26.69 -0.27 -4.83 16 18 C -0.13 -3.11 8.91 -26.69 -0.24 -3.35 16 19 N -0.49 -6.71 4.82 -209.03 -1.01 -7.72 16 20 C 0.04 0.56 1.98 -66.18 -0.13 0.43 16 21 H 0.10 1.56 4.76 -52.36 -0.25 1.31 16 22 C -0.14 -1.57 9.23 37.16 0.34 -1.23 16 23 C -0.11 -1.41 6.50 -24.59 -0.16 -1.57 16 24 C -0.13 -1.72 5.94 -24.91 -0.15 -1.87 16 25 C 0.07 1.00 3.71 -66.72 -0.25 0.75 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.20 -3.07 7.67 37.16 0.28 -2.78 16 28 H 0.06 0.74 6.06 -51.93 -0.31 0.43 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.64 8.13 -51.93 -0.42 1.22 16 32 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.10 2.40 7.73 -51.93 -0.40 2.00 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.64 5.47 -51.93 -0.28 0.35 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 43 H 0.08 1.23 6.78 -51.93 -0.35 0.87 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.98 5.73 -51.93 -0.30 0.68 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.50 4.29 -51.93 -0.22 1.28 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -27.98 353.99 -9.25 -37.23 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.89 Total: 5.88 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.76 Total: -15.21 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: -0.34 Total: -31.66 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.57 Total: -17.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.98 -9.25 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.226 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds