Wall clock time and date at job start Tue Mar 31 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46915 * 119.99535 * 2 1 3 5 5 O 1.20820 * 120.00177 * 103.30529 * 4 2 1 6 6 O 1.34226 * 119.99973 * 283.29991 * 4 2 1 7 7 C 1.45202 * 117.00075 * 185.05468 * 6 4 2 8 8 C 1.53003 * 109.47086 * 184.43726 * 7 6 4 9 9 C 1.50703 * 115.54747 * 63.59619 * 8 7 6 10 10 H 1.08000 * 120.00279 * 266.97690 * 9 8 7 11 11 C 1.37879 * 120.00103 * 86.97478 * 9 8 7 12 12 N 1.31512 * 119.99949 * 178.85889 * 11 9 8 13 13 Si 1.86805 * 119.99769 * 358.85588 * 11 9 8 14 14 H 1.48499 * 109.47060 * 91.32408 * 13 11 9 15 15 H 1.48503 * 109.46832 * 211.32213 * 13 11 9 16 16 H 1.48494 * 109.47059 * 331.31957 * 13 11 9 17 17 C 1.52997 * 117.50339 * 277.92371 * 8 7 6 18 18 C 1.53001 * 117.49918 * 209.26023 * 8 7 6 19 19 N 1.46898 * 109.47883 * 239.99529 * 2 1 3 20 20 C 1.47848 * 110.99743 * 49.40332 * 19 2 1 21 21 H 1.09001 * 110.37267 * 27.53652 * 20 19 2 22 22 C 1.52996 * 110.37378 * 265.19811 * 20 19 2 23 23 C 1.54903 * 104.79576 * 146.36686 * 20 19 2 24 24 C 1.55138 * 101.65267 * 322.93142 * 23 20 19 25 25 C 1.47438 * 111.00497 * 170.24903 * 19 2 1 26 26 H 1.08997 * 109.88703 * 117.33758 * 25 19 2 27 27 C 1.53002 * 109.89007 * 356.31247 * 25 19 2 28 28 H 1.08995 * 109.47270 * 294.86884 * 1 2 3 29 29 H 1.08999 * 109.46711 * 54.87185 * 1 2 3 30 30 H 1.08998 * 109.47085 * 174.86559 * 1 2 3 31 31 H 1.08995 * 109.47380 * 304.44215 * 7 6 4 32 32 H 1.09000 * 109.47077 * 64.43940 * 7 6 4 33 33 H 0.97004 * 119.99974 * 180.02562 * 12 11 9 34 34 H 1.09001 * 117.49713 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49888 * 145.01487 * 17 8 7 36 36 H 1.09004 * 117.49836 * 214.98076 * 18 8 7 37 37 H 1.08998 * 117.49730 * 359.97438 * 18 8 7 38 38 H 1.08998 * 109.47287 * 66.14854 * 22 20 19 39 39 H 1.09010 * 109.46939 * 186.14458 * 22 20 19 40 40 H 1.08997 * 109.47395 * 306.14001 * 22 20 19 41 41 H 1.09001 * 110.99329 * 204.83956 * 23 20 19 42 42 H 1.09000 * 110.98884 * 81.02723 * 23 20 19 43 43 H 1.09000 * 110.70793 * 277.26818 * 24 23 20 44 44 H 1.09001 * 110.70612 * 154.03583 * 24 23 20 45 45 H 1.08996 * 109.46947 * 65.95067 * 27 25 19 46 46 H 1.08997 * 109.47261 * 185.95684 * 27 25 19 47 47 H 1.09003 * 109.46725 * 305.95606 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4607 -1.8368 1.1453 6 8 2.0038 -0.0915 2.4213 7 6 2.6062 -0.7908 3.5422 8 6 2.3814 0.0126 4.8249 9 6 0.9434 0.1793 5.2438 10 1 0.3875 1.0509 4.9313 11 6 0.3375 -0.7810 6.0259 12 7 -0.9105 -0.6246 6.4102 13 14 1.2892 -2.3041 6.5397 14 1 1.9534 -2.0560 7.8445 15 1 0.3549 -3.4510 6.6700 16 1 2.3157 -2.6161 5.5131 17 6 3.3391 1.1713 5.1097 18 6 3.4294 -0.1166 5.9321 19 7 2.0198 -0.6925 -1.1993 20 6 1.3497 -0.1845 -2.4153 21 1 1.0346 0.8490 -2.2712 22 6 0.1489 -1.0643 -2.7688 23 6 2.4265 -0.2702 -3.5255 24 6 3.7117 0.1131 -2.7458 25 6 3.4749 -0.5136 -1.3556 26 1 3.9760 -1.4796 -1.2941 27 6 4.0051 0.4179 -0.2638 28 1 -0.3633 0.4322 0.9323 29 1 -0.3633 0.5913 -0.8405 30 1 -0.3633 -1.0235 -0.0920 31 1 2.1487 -1.7747 3.6449 32 1 3.6761 -0.9041 3.3673 33 1 -1.3367 -1.3000 6.9607 34 1 4.1290 1.3616 4.3831 35 1 2.9291 2.0541 5.6003 36 1 3.0787 -0.0806 6.9636 37 1 4.2787 -0.7743 5.7470 38 1 -0.6102 -0.9721 -1.9921 39 1 -0.2677 -0.7438 -3.7238 40 1 0.4691 -2.1035 -2.8425 41 1 2.2245 0.4464 -4.3217 42 1 2.4980 -1.2828 -3.9227 43 1 3.8073 1.1962 -2.6690 44 1 4.5931 -0.3200 -3.2187 45 1 3.8948 -0.0623 0.7085 46 1 5.0584 0.6299 -0.4470 47 1 3.4396 1.3497 -0.2751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849732742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:19 Heat of formation + Delta-G solvation = -42.902849 kcal Electronic energy + Delta-G solvation = -25581.339389 eV Core-core repulsion = 22151.700064 eV Total energy + Delta-G solvation = -3429.639325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80419 -39.07679 -37.04239 -35.30819 -33.66830 -33.02131 -32.09701 -29.07244 -28.23174 -27.29639 -25.44501 -24.62234 -23.50521 -21.72867 -21.13906 -20.50260 -19.20936 -18.89095 -17.24697 -16.68237 -16.32290 -16.09609 -15.87846 -15.34342 -14.83515 -14.13859 -13.97081 -13.72572 -13.48506 -13.16643 -12.90305 -12.82242 -12.62005 -12.33079 -12.21652 -12.17426 -11.96144 -11.82253 -11.47197 -11.35410 -11.17409 -11.14388 -10.87440 -10.84542 -10.79083 -10.63646 -10.55347 -10.23731 -9.96323 -9.83870 -9.55518 -9.03144 -8.58852 -8.57566 -8.31082 -6.11580 -4.14277 2.74737 3.01973 3.27871 3.38275 3.41606 3.87060 4.39976 4.40732 4.49806 4.70216 4.81353 4.96231 5.03297 5.10095 5.14938 5.15742 5.24145 5.27003 5.35361 5.46288 5.52996 5.57827 5.64696 5.67334 5.73123 5.76190 5.79261 5.88387 5.95801 5.97483 5.99078 6.04402 6.13388 6.17006 6.24448 6.30961 6.35337 6.40722 6.65975 6.91889 6.92853 6.96396 7.06402 7.22072 7.69504 8.41002 8.51269 8.92958 9.50877 11.00269 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.004359 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.852575 B = 6421.991665 C = 6961.214444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.082 0.918 4 C 0.463 3.537 5 O -0.505 6.505 6 O -0.335 6.335 7 C 0.110 3.890 8 C -0.004 4.004 9 C -0.480 4.480 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.896 5.896 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.291 1.291 16 H -0.261 1.261 17 C -0.173 4.173 18 C -0.191 4.191 19 N -0.503 5.503 20 C 0.071 3.929 21 H 0.058 0.942 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.138 4.138 25 C 0.072 3.928 26 H 0.090 0.910 27 C -0.181 4.181 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 2.731 -18.270 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.100 0.900 4 C 0.305 3.695 5 O -0.393 6.393 6 O -0.251 6.251 7 C 0.036 3.964 8 C -0.005 4.005 9 C -0.517 4.517 10 H 0.099 0.901 11 C -0.125 4.125 12 N -0.533 5.533 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.185 1.185 17 C -0.210 4.210 18 C -0.229 4.229 19 N -0.229 5.229 20 C -0.037 4.037 21 H 0.076 0.924 22 C -0.202 4.202 23 C -0.162 4.162 24 C -0.177 4.177 25 C -0.036 4.036 26 H 0.108 0.892 27 C -0.239 4.239 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.974 1.773 -18.048 19.429 hybrid contribution 0.758 -0.224 0.460 0.914 sum 7.731 1.550 -17.588 19.275 Atomic orbital electron populations 1.22048 0.91454 1.03648 1.03633 1.21387 0.97356 0.96529 0.87434 0.90026 1.23174 0.75571 0.85543 0.85198 1.90616 1.43217 1.19061 1.86406 1.86531 1.72506 1.49171 1.16863 1.22986 0.94165 0.96015 0.83238 1.19329 0.93622 0.97248 0.90310 1.20203 0.92085 1.08253 1.31201 0.90100 1.24975 0.94664 0.97691 0.95173 1.69881 1.11919 1.35253 1.36244 0.86925 0.80148 0.82989 0.79653 1.20222 1.21811 1.18534 1.22821 1.02398 0.93009 1.02813 1.23000 1.01138 1.01029 0.97692 1.63476 1.03709 1.55045 1.00656 1.22560 0.94995 0.97351 0.88797 0.92438 1.21954 0.96930 1.00389 1.00946 1.22737 0.94121 1.02289 0.97040 1.22888 0.98527 1.00734 0.95535 1.22404 0.88229 0.99145 0.93799 0.89226 1.22559 1.01814 0.99850 0.99638 0.90092 0.91140 0.90873 0.91427 0.93923 0.92514 0.90894 0.89159 0.88774 0.90784 0.91615 0.92595 0.91786 0.90836 0.90467 0.91306 0.90743 0.91814 0.91585 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.59 37.16 0.28 -1.77 16 2 C 0.08 1.22 2.01 -68.87 -0.14 1.08 16 3 H 0.08 1.11 5.72 -51.93 -0.30 0.81 16 4 C 0.46 8.87 4.21 36.01 0.15 9.02 16 5 O -0.50 -10.86 15.51 -18.75 -0.29 -11.15 16 6 O -0.34 -7.17 10.13 -39.25 -0.40 -7.57 16 7 C 0.11 2.46 5.02 37.16 0.19 2.65 16 8 C 0.00 -0.10 1.06 -155.66 -0.17 -0.26 16 9 C -0.48 -13.37 9.34 -34.44 -0.32 -13.69 16 10 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 12 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 13 Si 0.88 21.79 24.87 -169.99 -4.23 17.57 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.25 5.72 56.52 0.32 -5.93 16 17 C -0.17 -3.50 9.96 -26.69 -0.27 -3.76 16 18 C -0.19 -4.02 7.59 -26.69 -0.20 -4.23 16 19 N -0.50 -6.74 4.32 -209.05 -0.90 -7.65 16 20 C 0.07 0.73 2.38 -66.19 -0.16 0.57 16 21 H 0.06 0.56 7.03 -51.93 -0.36 0.20 16 22 C -0.14 -1.41 9.13 37.16 0.34 -1.07 16 23 C -0.12 -1.07 6.49 -24.60 -0.16 -1.23 16 24 C -0.14 -1.26 6.47 -24.91 -0.16 -1.42 16 25 C 0.07 0.89 3.46 -66.73 -0.23 0.66 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 C -0.18 -2.27 7.75 37.16 0.29 -1.99 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.75 6.01 -51.93 -0.31 0.44 16 30 H 0.07 1.05 7.23 -51.93 -0.38 0.67 16 31 H 0.07 1.65 6.48 -51.93 -0.34 1.31 16 32 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 36 H 0.09 2.05 7.25 -51.93 -0.38 1.67 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.67 5.21 -51.93 -0.27 0.40 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16 43 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.99 5.06 -51.93 -0.26 0.73 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.75 6.17 -51.93 -0.32 0.43 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -31.37 354.64 -8.38 -39.75 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.03 Total: 3.35 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.65 Total: -13.32 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.13 Total: -33.98 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.69 Total: -18.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.23 Total: 17.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.37 -8.38 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.148 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds