Wall clock time and date at job start Tue Mar 31 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46915 * 119.99535 * 2 1 3 5 5 O 1.20820 * 120.00177 * 103.30529 * 4 2 1 6 6 O 1.34226 * 119.99973 * 283.29991 * 4 2 1 7 7 C 1.45202 * 117.00075 * 185.05468 * 6 4 2 8 8 C 1.53003 * 109.47086 * 184.43726 * 7 6 4 9 9 C 1.50703 * 115.54747 * 63.59619 * 8 7 6 10 10 H 1.08000 * 120.00279 * 266.97690 * 9 8 7 11 11 C 1.37879 * 120.00103 * 86.97478 * 9 8 7 12 12 N 1.31512 * 119.99949 * 178.85889 * 11 9 8 13 13 Si 1.86805 * 119.99769 * 358.85588 * 11 9 8 14 14 H 1.48499 * 109.47060 * 91.32408 * 13 11 9 15 15 H 1.48503 * 109.46832 * 211.32213 * 13 11 9 16 16 H 1.48494 * 109.47059 * 331.31957 * 13 11 9 17 17 C 1.52997 * 117.50339 * 277.92371 * 8 7 6 18 18 C 1.53001 * 117.49918 * 209.26023 * 8 7 6 19 19 N 1.46898 * 109.47883 * 239.99529 * 2 1 3 20 20 C 1.47848 * 110.99743 * 49.40332 * 19 2 1 21 21 H 1.09001 * 110.37267 * 27.53652 * 20 19 2 22 22 C 1.52996 * 110.37378 * 265.19811 * 20 19 2 23 23 C 1.54903 * 104.79576 * 146.36686 * 20 19 2 24 24 C 1.55138 * 101.65267 * 322.93142 * 23 20 19 25 25 C 1.47438 * 111.00497 * 170.24903 * 19 2 1 26 26 H 1.08997 * 109.88703 * 117.33758 * 25 19 2 27 27 C 1.53002 * 109.89007 * 356.31247 * 25 19 2 28 28 H 1.08995 * 109.47270 * 294.86884 * 1 2 3 29 29 H 1.08999 * 109.46711 * 54.87185 * 1 2 3 30 30 H 1.08998 * 109.47085 * 174.86559 * 1 2 3 31 31 H 1.08995 * 109.47380 * 304.44215 * 7 6 4 32 32 H 1.09000 * 109.47077 * 64.43940 * 7 6 4 33 33 H 0.97004 * 119.99974 * 180.02562 * 12 11 9 34 34 H 1.09001 * 117.49713 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49888 * 145.01487 * 17 8 7 36 36 H 1.09004 * 117.49836 * 214.98076 * 18 8 7 37 37 H 1.08998 * 117.49730 * 359.97438 * 18 8 7 38 38 H 1.08998 * 109.47287 * 66.14854 * 22 20 19 39 39 H 1.09010 * 109.46939 * 186.14458 * 22 20 19 40 40 H 1.08997 * 109.47395 * 306.14001 * 22 20 19 41 41 H 1.09001 * 110.99329 * 204.83956 * 23 20 19 42 42 H 1.09000 * 110.98884 * 81.02723 * 23 20 19 43 43 H 1.09000 * 110.70793 * 277.26818 * 24 23 20 44 44 H 1.09001 * 110.70612 * 154.03583 * 24 23 20 45 45 H 1.08996 * 109.46947 * 65.95067 * 27 25 19 46 46 H 1.08997 * 109.47261 * 185.95684 * 27 25 19 47 47 H 1.09003 * 109.46725 * 305.95606 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4607 -1.8368 1.1453 6 8 2.0038 -0.0915 2.4213 7 6 2.6062 -0.7908 3.5422 8 6 2.3814 0.0126 4.8249 9 6 0.9434 0.1793 5.2438 10 1 0.3875 1.0509 4.9313 11 6 0.3375 -0.7810 6.0259 12 7 -0.9105 -0.6246 6.4102 13 14 1.2892 -2.3041 6.5397 14 1 1.9534 -2.0560 7.8445 15 1 0.3549 -3.4510 6.6700 16 1 2.3157 -2.6161 5.5131 17 6 3.3391 1.1713 5.1097 18 6 3.4294 -0.1166 5.9321 19 7 2.0198 -0.6925 -1.1993 20 6 1.3497 -0.1845 -2.4153 21 1 1.0346 0.8490 -2.2712 22 6 0.1489 -1.0643 -2.7688 23 6 2.4265 -0.2702 -3.5255 24 6 3.7117 0.1131 -2.7458 25 6 3.4749 -0.5136 -1.3556 26 1 3.9760 -1.4796 -1.2941 27 6 4.0051 0.4179 -0.2638 28 1 -0.3633 0.4322 0.9323 29 1 -0.3633 0.5913 -0.8405 30 1 -0.3633 -1.0235 -0.0920 31 1 2.1487 -1.7747 3.6449 32 1 3.6761 -0.9041 3.3673 33 1 -1.3367 -1.3000 6.9607 34 1 4.1290 1.3616 4.3831 35 1 2.9291 2.0541 5.6003 36 1 3.0787 -0.0806 6.9636 37 1 4.2787 -0.7743 5.7470 38 1 -0.6102 -0.9721 -1.9921 39 1 -0.2677 -0.7438 -3.7238 40 1 0.4691 -2.1035 -2.8425 41 1 2.2245 0.4464 -4.3217 42 1 2.4980 -1.2828 -3.9227 43 1 3.8073 1.1962 -2.6690 44 1 4.5931 -0.3200 -3.2187 45 1 3.8948 -0.0623 0.7085 46 1 5.0584 0.6299 -0.4470 47 1 3.4396 1.3497 -0.2751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849732742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:19 Heat of formation + Delta-G solvation = -62.159722 kcal Electronic energy + Delta-G solvation = -25582.174429 eV Core-core repulsion = 22151.700064 eV Total energy + Delta-G solvation = -3430.474365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07584 -40.34392 -38.74237 -36.95887 -34.71293 -34.27021 -33.89497 -30.05951 -29.14975 -28.95884 -27.45639 -25.74333 -24.54141 -23.38164 -22.13348 -21.59697 -21.06853 -20.03066 -18.79117 -18.40984 -17.67955 -17.42332 -17.05504 -16.78860 -16.59362 -15.60386 -15.29000 -14.82749 -14.70915 -14.52492 -14.32183 -14.13367 -13.92809 -13.81529 -13.43498 -13.23024 -13.11961 -13.05780 -12.82204 -12.72419 -12.44384 -12.33630 -12.26228 -12.10126 -12.06687 -11.74351 -11.70445 -11.64665 -11.55147 -11.45364 -11.20299 -10.95022 -10.67687 -10.38762 -9.29337 -8.32602 -6.38970 1.24871 1.29293 1.34318 1.43440 1.61953 2.31971 2.83308 3.00724 3.14947 3.54356 3.69817 3.77421 3.87313 3.91912 3.96958 4.04060 4.18069 4.20102 4.26066 4.34881 4.35186 4.36915 4.48118 4.57204 4.61127 4.63665 4.71331 4.79479 4.79825 4.89950 4.93834 4.99329 5.00531 5.06554 5.08077 5.15427 5.19079 5.28191 5.39093 5.42966 5.49110 5.62603 5.64133 5.92727 6.07655 6.28277 6.68290 6.88278 7.29630 8.83055 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.004359 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.852575 B = 6421.991665 C = 6961.214444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.099 0.901 4 C 0.461 3.539 5 O -0.534 6.534 6 O -0.350 6.350 7 C 0.116 3.884 8 C -0.039 4.039 9 C -0.478 4.478 10 H 0.036 0.964 11 C 0.024 3.976 12 N -0.945 5.945 13 Si 0.930 3.070 14 H -0.257 1.257 15 H -0.297 1.297 16 H -0.246 1.246 17 C -0.151 4.151 18 C -0.181 4.181 19 N -0.523 5.523 20 C 0.066 3.934 21 H 0.071 0.929 22 C -0.143 4.143 23 C -0.117 4.117 24 C -0.129 4.129 25 C 0.067 3.933 26 H 0.066 0.934 27 C -0.177 4.177 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.266 0.734 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.029 0.971 46 H 0.084 0.916 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 3.365 -20.254 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 H 0.116 0.884 4 C 0.305 3.695 5 O -0.424 6.424 6 O -0.266 6.266 7 C 0.042 3.958 8 C -0.040 4.040 9 C -0.516 4.516 10 H 0.054 0.946 11 C -0.174 4.174 12 N -0.584 5.584 13 Si 0.755 3.245 14 H -0.182 1.182 15 H -0.225 1.225 16 H -0.169 1.169 17 C -0.188 4.188 18 C -0.218 4.218 19 N -0.250 5.250 20 C -0.041 4.041 21 H 0.088 0.912 22 C -0.201 4.201 23 C -0.155 4.155 24 C -0.167 4.167 25 C -0.041 4.041 26 H 0.085 0.915 27 C -0.234 4.234 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.048 0.952 46 H 0.103 0.897 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.147 2.425 -20.048 22.169 hybrid contribution 0.048 -0.362 1.006 1.070 sum 9.195 2.063 -19.042 21.246 Atomic orbital electron populations 1.22044 0.90787 1.03413 1.04053 1.21426 0.97673 0.96711 0.86117 0.88419 1.24111 0.74500 0.85415 0.85435 1.90587 1.44650 1.20475 1.86642 1.86543 1.72875 1.49536 1.17606 1.22740 0.95197 0.94458 0.83389 1.19223 0.91876 1.00909 0.91983 1.20328 0.94426 1.06464 1.30384 0.94561 1.25762 0.95397 1.00778 0.95463 1.70020 1.13853 1.36647 1.37910 0.86027 0.79194 0.78938 0.80381 1.18163 1.22453 1.16933 1.22874 1.01320 0.92100 1.02518 1.23071 1.00486 1.01824 0.96404 1.63416 1.04695 1.55763 1.01085 1.22732 0.95503 0.97881 0.87987 0.91154 1.21949 0.96611 0.99572 1.01941 1.22740 0.92947 1.02928 0.96889 1.22841 0.99314 1.01301 0.93271 1.22408 0.87444 0.98352 0.95848 0.91550 1.22515 1.03279 0.99778 0.97852 0.92049 0.87682 0.92043 0.94113 0.91604 0.92496 0.87727 0.89556 0.89615 0.87784 0.92479 0.90156 0.93279 0.88283 0.90798 0.89968 0.89523 0.95185 0.89739 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 7.59 71.98 0.55 -3.38 16 2 C 0.09 2.62 2.01 44.17 0.09 2.71 16 3 H 0.10 2.50 5.72 -2.39 -0.01 2.48 16 4 C 0.46 17.88 4.21 71.24 0.30 18.18 16 5 O -0.53 -23.44 15.51 21.98 0.34 -23.10 16 6 O -0.35 -15.16 10.13 -51.38 -0.52 -15.68 16 7 C 0.12 5.18 5.02 71.98 0.36 5.54 16 8 C -0.04 -1.81 1.06 -52.93 -0.06 -1.87 16 9 C -0.48 -27.46 9.34 25.60 0.24 -27.22 16 10 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 11 C 0.02 1.39 5.47 84.66 0.46 1.86 16 12 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 13 Si 0.93 45.15 24.87 68.60 1.71 46.86 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 16 H -0.25 -11.25 5.72 99.48 0.57 -10.68 16 17 C -0.15 -5.78 9.96 30.62 0.30 -5.47 16 18 C -0.18 -7.15 7.59 30.62 0.23 -6.91 16 19 N -0.52 -13.42 4.32 -815.30 -3.53 -16.95 16 20 C 0.07 1.19 2.38 45.38 0.11 1.30 16 21 H 0.07 1.12 7.03 -2.39 -0.02 1.10 16 22 C -0.14 -2.51 9.13 71.98 0.66 -1.86 16 23 C -0.12 -1.63 6.49 31.98 0.21 -1.42 16 24 C -0.13 -1.94 6.47 31.77 0.21 -1.74 16 25 C 0.07 1.56 3.46 45.26 0.16 1.72 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 C -0.18 -4.16 7.75 71.98 0.56 -3.61 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.05 6.01 -2.39 -0.01 2.04 16 30 H 0.06 1.78 7.23 -2.39 -0.02 1.76 16 31 H 0.04 2.00 6.48 -2.39 -0.02 1.98 16 32 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.09 3.54 7.25 -2.38 -0.02 3.52 16 37 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.06 1.09 5.21 -2.39 -0.01 1.08 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 43 H 0.08 1.05 7.86 -2.39 -0.02 1.04 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.03 0.91 5.06 -2.39 -0.01 0.90 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 1.55 6.17 -2.39 -0.01 1.54 16 Total: -1.00 -71.36 354.64 3.48 -67.88 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.80 Total: 22.24 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.37 Total: -22.17 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -3.23 Total: -76.03 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.18 Total: -38.78 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.71 Total: 46.86 kcal Total: -71.36 3.48 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.720 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds