Wall clock time and date at job start Tue Mar 31 2020 07:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50703 * 109.46900 * 119.99599 * 2 1 3 5 5 H 1.08002 * 119.99892 * 120.00147 * 4 2 1 6 6 C 1.37876 * 120.00289 * 299.99951 * 4 2 1 7 7 N 1.31517 * 119.99715 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47018 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47209 * 120.00001 * 8 6 4 11 11 H 1.48502 * 109.47358 * 240.00185 * 8 6 4 12 12 C 1.50698 * 109.47412 * 239.99721 * 2 1 3 13 13 O 1.21279 * 119.99959 * 253.76160 * 12 2 1 14 14 N 1.34776 * 119.99967 * 73.74936 * 12 2 1 15 15 C 1.46920 * 120.63209 * 185.22507 * 14 12 2 16 16 C 1.52755 * 109.01196 * 233.58594 * 15 14 12 17 17 C 1.53037 * 109.38740 * 305.58985 * 16 15 14 18 18 C 1.53046 * 109.53649 * 61.23638 * 17 16 15 19 19 H 1.09003 * 109.52450 * 58.60401 * 18 17 16 20 20 C 1.52998 * 109.49565 * 178.68828 * 18 17 16 21 21 C 1.53173 * 109.54147 * 299.65802 * 20 18 17 22 22 C 1.53116 * 109.15595 * 183.24616 * 21 20 18 23 23 O 1.42897 * 109.48931 * 57.47250 * 22 21 20 24 24 C 1.42911 * 114.09917 * 298.89326 * 23 22 21 25 25 C 1.53091 * 109.41110 * 61.15710 * 24 23 22 26 26 C 1.46928 * 120.63020 * 5.51345 * 14 12 2 27 27 H 1.09003 * 109.46881 * 306.15709 * 1 2 3 28 28 H 1.09006 * 109.47132 * 66.15121 * 1 2 3 29 29 H 1.08994 * 109.47189 * 186.15607 * 1 2 3 30 30 H 0.97003 * 119.99428 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.58640 * 353.42567 * 15 14 12 32 32 H 1.09007 * 109.58652 * 113.84538 * 15 14 12 33 33 H 1.09000 * 109.56820 * 185.54908 * 16 15 14 34 34 H 1.09007 * 109.38500 * 65.51872 * 16 15 14 35 35 H 1.08999 * 109.45915 * 301.22129 * 17 16 15 36 36 H 1.08998 * 109.46671 * 181.25558 * 17 16 15 37 37 H 1.08999 * 109.54599 * 59.83736 * 20 18 17 38 38 H 1.08998 * 109.52733 * 303.05653 * 21 20 18 39 39 H 1.09002 * 109.52556 * 63.25308 * 21 20 18 40 40 H 1.09004 * 109.40103 * 297.49378 * 22 21 20 41 41 H 1.08999 * 109.47872 * 177.50823 * 22 21 20 42 42 H 1.08996 * 109.47695 * 301.17176 * 24 23 22 43 43 H 1.09001 * 109.48735 * 181.14384 * 24 23 22 44 44 H 1.09004 * 109.51885 * 182.49069 * 25 24 23 45 45 H 1.08993 * 109.57677 * 62.33198 * 25 24 23 46 46 H 1.09005 * 109.58448 * 246.15437 * 26 14 12 47 47 H 1.09001 * 109.58626 * 6.57469 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1472 -0.1855 4.8161 11 1 1.1677 -1.5864 4.8166 12 6 2.0324 -0.7104 -1.2304 13 8 2.5114 -1.8206 -1.1364 14 7 1.9491 -0.1122 -2.4352 15 6 2.3282 -0.8342 -3.6573 16 6 3.3561 -0.0060 -4.4260 17 6 2.7965 1.3969 -4.6724 18 6 2.5262 2.0830 -3.3313 19 1 3.4506 2.1354 -2.7560 20 6 1.9975 3.4973 -3.5786 21 6 3.0413 4.3059 -4.3551 22 6 2.5383 5.7418 -4.5271 23 8 2.2768 6.3123 -3.2433 24 6 1.2738 5.6248 -2.4925 25 6 1.7270 4.1851 -2.2369 26 6 1.4834 1.2766 -2.5508 27 1 -0.3633 0.6063 0.8298 28 1 -0.3634 0.4155 -0.9400 29 1 -0.3633 -1.0217 0.1102 30 1 0.7087 1.1614 3.4844 31 1 2.7621 -1.7983 -3.3924 32 1 1.4465 -0.9866 -4.2800 33 1 3.5704 -0.4852 -5.3812 34 1 4.2733 0.0657 -3.8412 35 1 1.8667 1.3231 -5.2364 36 1 3.5199 1.9820 -5.2402 37 1 1.0737 3.4457 -4.1548 38 1 3.9807 4.3142 -3.8023 39 1 3.1978 3.8536 -5.3344 40 1 1.6210 5.7360 -5.1159 41 1 3.2963 6.3334 -5.0403 42 1 0.3401 5.6176 -3.0548 43 1 1.1207 6.1323 -1.5401 44 1 0.9444 3.6463 -1.7027 45 1 2.6387 4.1898 -1.6396 46 1 0.5315 1.2998 -3.0814 47 1 1.3601 1.7046 -1.5560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886161330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:54 Heat of formation + Delta-G solvation = -107.592553 kcal Electronic energy + Delta-G solvation = -25552.754892 eV Core-core repulsion = 22120.310411 eV Total energy + Delta-G solvation = -3432.444481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16093 -39.03825 -37.08992 -34.40828 -33.81418 -32.35950 -31.14432 -30.41170 -29.77164 -25.45493 -25.17632 -25.02253 -23.54743 -22.50880 -21.62647 -20.21922 -19.96089 -18.36904 -16.52311 -16.27596 -16.06075 -15.73782 -15.43158 -15.00265 -14.71873 -14.46126 -14.25825 -13.95513 -13.76771 -13.37379 -13.26764 -12.85601 -12.75564 -12.31130 -12.19279 -12.03289 -11.64623 -11.45201 -11.39841 -11.08117 -11.01823 -10.92006 -10.68701 -10.67659 -10.58499 -10.50846 -10.25643 -10.24448 -10.07315 -9.94312 -9.50961 -8.93058 -8.56200 -8.29590 -8.01444 -6.03074 -4.04960 3.32639 3.40213 3.48060 3.66047 3.72650 3.81925 4.47030 4.52344 4.58377 4.74561 4.92275 5.00205 5.04408 5.12142 5.14955 5.30955 5.31619 5.33773 5.42701 5.48386 5.60220 5.64053 5.68877 5.71776 5.78665 5.85580 5.90335 5.96932 5.99419 6.02919 6.10650 6.16571 6.25331 6.32692 6.36610 6.51216 6.66030 6.83440 6.95518 7.12294 7.16447 7.46526 7.75285 7.99707 8.10830 8.40879 9.02995 9.24633 9.60231 11.05084 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.004849 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.109586 B = 5772.415177 C = 7144.681696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.626 5.626 15 C 0.109 3.891 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.097 4.097 19 H 0.076 0.924 20 C -0.079 4.079 21 C -0.151 4.151 22 C 0.061 3.939 23 O -0.386 6.386 24 C 0.062 3.938 25 C -0.157 4.157 26 C 0.115 3.885 27 H 0.090 0.910 28 H 0.012 0.988 29 H 0.033 0.967 30 H 0.260 0.740 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 9.227 -16.328 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.423 6.423 14 N -0.361 5.361 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.117 4.117 19 H 0.095 0.905 20 C -0.098 4.098 21 C -0.189 4.189 22 C -0.016 4.016 23 O -0.305 6.305 24 C -0.015 4.015 25 C -0.195 4.195 26 C -0.008 4.008 27 H 0.108 0.892 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.527 8.860 -16.038 18.330 hybrid contribution 0.123 -0.638 0.642 0.913 sum 0.650 8.222 -15.396 17.466 Atomic orbital electron populations 1.21722 0.96283 1.00968 0.99700 1.18861 0.94161 0.96560 0.89344 0.93381 1.21177 1.30978 1.12603 0.89062 0.90977 1.24928 0.95102 0.95055 0.99037 1.69888 1.37186 1.23117 1.23392 0.86428 0.78652 0.79811 0.82559 1.19592 1.21060 1.21025 1.22025 0.76029 0.86314 0.84245 1.90513 1.44833 1.21193 1.85755 1.48313 1.67899 1.13464 1.06473 1.21323 0.97116 0.96725 0.86238 1.21826 0.99323 0.95939 1.00069 1.21591 1.00861 0.95756 0.96749 1.21589 0.99876 0.93416 0.96802 0.90530 1.21156 0.98450 0.93901 0.96334 1.22286 0.99721 0.95691 1.01153 1.22554 0.99876 0.93905 0.85233 1.87924 1.59215 1.53889 1.29442 1.22605 0.90095 0.92648 0.96155 1.22329 1.03498 0.96028 0.97595 1.21784 0.95469 0.81507 1.02054 0.89172 0.96870 0.94748 0.93057 0.89510 0.92736 0.91416 0.91671 0.92090 0.91864 0.91070 0.90967 0.90784 0.93496 0.89278 0.93374 0.88758 0.89901 0.90576 0.92476 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.61 37.16 0.32 -2.68 16 2 C 0.03 0.79 1.78 -92.92 -0.17 0.62 16 3 H 0.05 1.22 6.67 -51.93 -0.35 0.87 16 4 C -0.50 -14.26 8.36 -34.44 -0.29 -14.55 16 5 H 0.07 2.19 6.84 -52.49 -0.36 1.83 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.95 11.39 55.43 0.63 -24.32 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 C 0.52 12.21 6.90 -10.99 -0.08 12.14 16 13 O -0.55 -14.61 14.99 5.56 0.08 -14.52 16 14 N -0.63 -11.36 2.98 -173.04 -0.52 -11.88 16 15 C 0.11 1.67 6.41 -3.94 -0.03 1.65 16 16 C -0.13 -1.63 6.06 -26.84 -0.16 -1.79 16 17 C -0.11 -1.19 4.86 -26.69 -0.13 -1.32 16 18 C -0.10 -1.19 1.93 -90.50 -0.17 -1.36 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.08 -0.82 1.86 -90.44 -0.17 -0.99 16 21 C -0.15 -1.40 4.99 -26.58 -0.13 -1.53 16 22 C 0.06 0.56 6.84 37.22 0.25 0.82 16 23 O -0.39 -4.58 10.77 -35.23 -0.38 -4.96 16 24 C 0.06 0.66 6.84 37.20 0.25 0.91 16 25 C -0.16 -1.80 4.98 -26.59 -0.13 -1.94 16 26 C 0.12 1.72 4.05 -3.71 -0.02 1.71 16 27 H 0.09 2.25 6.26 -51.93 -0.33 1.93 16 28 H 0.01 0.25 6.89 -51.93 -0.36 -0.11 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 6.45 -51.93 -0.33 0.25 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.59 6.60 -51.93 -0.34 0.24 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 0.99 6.76 -51.93 -0.35 0.64 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 1.65 3.99 -51.93 -0.21 1.44 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -31.36 350.50 -8.69 -40.05 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.04 Total: 0.25 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.73 Total: -6.76 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.12 Total: -36.20 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.30 Total: -19.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.36 -8.69 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886161330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.540 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds