Wall clock time and date at job start Tue Mar 31 2020 07:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50703 * 109.46900 * 119.99599 * 2 1 3 5 5 H 1.08002 * 119.99892 * 120.00147 * 4 2 1 6 6 C 1.37876 * 120.00289 * 299.99951 * 4 2 1 7 7 N 1.31517 * 119.99715 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47018 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47209 * 120.00001 * 8 6 4 11 11 H 1.48502 * 109.47358 * 240.00185 * 8 6 4 12 12 C 1.50698 * 109.47412 * 239.99721 * 2 1 3 13 13 O 1.21279 * 119.99959 * 253.76160 * 12 2 1 14 14 N 1.34776 * 119.99967 * 73.74936 * 12 2 1 15 15 C 1.46920 * 120.63209 * 185.22507 * 14 12 2 16 16 C 1.52755 * 109.01196 * 233.58594 * 15 14 12 17 17 C 1.53037 * 109.38740 * 305.58985 * 16 15 14 18 18 C 1.53046 * 109.53649 * 61.23638 * 17 16 15 19 19 H 1.09003 * 109.52450 * 58.60401 * 18 17 16 20 20 C 1.52998 * 109.49565 * 178.68828 * 18 17 16 21 21 C 1.53173 * 109.54147 * 299.65802 * 20 18 17 22 22 C 1.53116 * 109.15595 * 183.24616 * 21 20 18 23 23 O 1.42897 * 109.48931 * 57.47250 * 22 21 20 24 24 C 1.42911 * 114.09917 * 298.89326 * 23 22 21 25 25 C 1.53091 * 109.41110 * 61.15710 * 24 23 22 26 26 C 1.46928 * 120.63020 * 5.51345 * 14 12 2 27 27 H 1.09003 * 109.46881 * 306.15709 * 1 2 3 28 28 H 1.09006 * 109.47132 * 66.15121 * 1 2 3 29 29 H 1.08994 * 109.47189 * 186.15607 * 1 2 3 30 30 H 0.97003 * 119.99428 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.58640 * 353.42567 * 15 14 12 32 32 H 1.09007 * 109.58652 * 113.84538 * 15 14 12 33 33 H 1.09000 * 109.56820 * 185.54908 * 16 15 14 34 34 H 1.09007 * 109.38500 * 65.51872 * 16 15 14 35 35 H 1.08999 * 109.45915 * 301.22129 * 17 16 15 36 36 H 1.08998 * 109.46671 * 181.25558 * 17 16 15 37 37 H 1.08999 * 109.54599 * 59.83736 * 20 18 17 38 38 H 1.08998 * 109.52733 * 303.05653 * 21 20 18 39 39 H 1.09002 * 109.52556 * 63.25308 * 21 20 18 40 40 H 1.09004 * 109.40103 * 297.49378 * 22 21 20 41 41 H 1.08999 * 109.47872 * 177.50823 * 22 21 20 42 42 H 1.08996 * 109.47695 * 301.17176 * 24 23 22 43 43 H 1.09001 * 109.48735 * 181.14384 * 24 23 22 44 44 H 1.09004 * 109.51885 * 182.49069 * 25 24 23 45 45 H 1.08993 * 109.57677 * 62.33198 * 25 24 23 46 46 H 1.09005 * 109.58448 * 246.15437 * 26 14 12 47 47 H 1.09001 * 109.58626 * 6.57469 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1472 -0.1855 4.8161 11 1 1.1677 -1.5864 4.8166 12 6 2.0324 -0.7104 -1.2304 13 8 2.5114 -1.8206 -1.1364 14 7 1.9491 -0.1122 -2.4352 15 6 2.3282 -0.8342 -3.6573 16 6 3.3561 -0.0060 -4.4260 17 6 2.7965 1.3969 -4.6724 18 6 2.5262 2.0830 -3.3313 19 1 3.4506 2.1354 -2.7560 20 6 1.9975 3.4973 -3.5786 21 6 3.0413 4.3059 -4.3551 22 6 2.5383 5.7418 -4.5271 23 8 2.2768 6.3123 -3.2433 24 6 1.2738 5.6248 -2.4925 25 6 1.7270 4.1851 -2.2369 26 6 1.4834 1.2766 -2.5508 27 1 -0.3633 0.6063 0.8298 28 1 -0.3634 0.4155 -0.9400 29 1 -0.3633 -1.0217 0.1102 30 1 0.7087 1.1614 3.4844 31 1 2.7621 -1.7983 -3.3924 32 1 1.4465 -0.9866 -4.2800 33 1 3.5704 -0.4852 -5.3812 34 1 4.2733 0.0657 -3.8412 35 1 1.8667 1.3231 -5.2364 36 1 3.5199 1.9820 -5.2402 37 1 1.0737 3.4457 -4.1548 38 1 3.9807 4.3142 -3.8023 39 1 3.1978 3.8536 -5.3344 40 1 1.6210 5.7360 -5.1159 41 1 3.2963 6.3334 -5.0403 42 1 0.3401 5.6176 -3.0548 43 1 1.1207 6.1323 -1.5401 44 1 0.9444 3.6463 -1.7027 45 1 2.6387 4.1898 -1.6396 46 1 0.5315 1.2998 -3.0814 47 1 1.3601 1.7046 -1.5560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886161330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:53 Heat of formation + Delta-G solvation = -126.476331 kcal Electronic energy + Delta-G solvation = -25553.573754 eV Core-core repulsion = 22120.310411 eV Total energy + Delta-G solvation = -3433.263343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39152 -40.24658 -38.41875 -35.89889 -35.47602 -33.77109 -32.19913 -31.88231 -30.99847 -27.26107 -26.74005 -26.01849 -24.73481 -23.74504 -22.86646 -21.39146 -20.86954 -19.87958 -18.44545 -17.77409 -17.06810 -16.93236 -16.83458 -16.32802 -16.00234 -15.89915 -15.38205 -15.15134 -14.84189 -14.67294 -14.63818 -14.15224 -14.01439 -13.87527 -13.54104 -13.10789 -13.07643 -12.94668 -12.69757 -12.68947 -12.48914 -12.26882 -12.21123 -12.08668 -11.97988 -11.85509 -11.61770 -11.48623 -11.14039 -11.05408 -10.98692 -10.60838 -10.34270 -10.22673 -9.47933 -8.17546 -6.26942 1.36962 1.38932 1.52256 1.88366 2.20137 2.44894 3.06138 3.12208 3.59729 3.66981 3.82802 4.03807 4.06777 4.11202 4.15307 4.26269 4.32769 4.37631 4.40711 4.52027 4.60432 4.67996 4.69780 4.71652 4.84348 4.86247 4.90527 4.90732 4.94718 4.96951 5.00420 5.05688 5.06587 5.13870 5.17637 5.26917 5.36451 5.41075 5.45669 5.57638 5.70316 5.74125 5.93291 6.17794 6.36069 6.59127 6.80407 7.38022 7.49264 8.88979 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.004849 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.109586 B = 5772.415177 C = 7144.681696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.031 3.969 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.517 3.483 13 O -0.593 6.593 14 N -0.617 5.617 15 C 0.103 3.897 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.090 4.090 19 H 0.049 0.951 20 C -0.072 4.072 21 C -0.146 4.146 22 C 0.056 3.944 23 O -0.409 6.409 24 C 0.063 3.937 25 C -0.158 4.158 26 C 0.109 3.891 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 10.471 -18.820 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.010 3.990 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.473 6.473 14 N -0.350 5.350 15 C -0.020 4.020 16 C -0.165 4.165 17 C -0.143 4.143 18 C -0.109 4.109 19 H 0.068 0.932 20 C -0.090 4.090 21 C -0.183 4.183 22 C -0.020 4.020 23 O -0.328 6.328 24 C -0.014 4.014 25 C -0.196 4.196 26 C -0.013 4.013 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.220 10.156 -18.572 21.169 hybrid contribution 0.354 -0.986 1.384 1.736 sum 0.134 9.170 -17.188 19.482 Atomic orbital electron populations 1.21509 0.95049 0.99701 1.00797 1.18744 0.95108 0.95698 0.89440 0.94258 1.21291 1.31811 1.12512 0.91327 0.93906 1.25554 0.95134 0.95716 1.01242 1.69952 1.37066 1.23424 1.24272 0.85582 0.78429 0.78607 0.79510 1.20660 1.19779 1.19787 1.21685 0.76134 0.85754 0.85613 1.90480 1.47140 1.23010 1.86707 1.48270 1.66244 1.14645 1.05851 1.21595 0.99138 0.95902 0.85316 1.21800 0.97281 0.96873 1.00527 1.21596 1.02495 0.94421 0.95758 1.21496 0.97740 0.94465 0.97214 0.93199 1.21116 0.99664 0.92384 0.95873 1.22260 0.98416 0.95880 1.01779 1.22759 1.01169 0.93754 0.84353 1.87899 1.59607 1.54561 1.30762 1.22611 0.90591 0.91655 0.96498 1.22306 1.02018 0.97095 0.98152 1.22015 0.97636 0.79759 1.01898 0.90919 0.93373 0.96369 0.92540 0.92199 0.89953 0.88291 0.93820 0.89861 0.89525 0.88975 0.92615 0.88395 0.91748 0.87939 0.91533 0.89039 0.90775 0.93132 0.89788 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 8.61 71.98 0.62 -4.70 16 2 C 0.03 1.61 1.78 -12.29 -0.02 1.59 16 3 H 0.04 2.09 6.67 -2.38 -0.02 2.07 16 4 C -0.53 -31.62 8.36 25.60 0.21 -31.41 16 5 H 0.04 2.75 6.84 -2.91 -0.02 2.73 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -51.18 11.39 21.45 0.24 -50.93 16 8 Si 0.95 45.65 29.54 68.60 2.03 47.67 16 9 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.52 25.04 6.90 87.66 0.60 25.64 16 13 O -0.59 -33.27 14.99 -3.03 -0.05 -33.32 16 14 N -0.62 -22.26 2.98 -819.76 -2.44 -24.70 16 15 C 0.10 3.01 6.41 86.22 0.55 3.56 16 16 C -0.13 -2.78 6.06 30.53 0.19 -2.59 16 17 C -0.11 -1.83 4.86 30.62 0.15 -1.68 16 18 C -0.09 -2.03 1.93 -10.72 -0.02 -2.05 16 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.07 -1.30 1.86 -10.68 -0.02 -1.32 16 21 C -0.15 -2.27 4.99 30.69 0.15 -2.11 16 22 C 0.06 0.86 6.84 72.02 0.49 1.35 16 23 O -0.41 -9.04 10.77 -148.98 -1.60 -10.64 16 24 C 0.06 1.26 6.84 72.01 0.49 1.75 16 25 C -0.16 -3.54 4.98 30.69 0.15 -3.39 16 26 C 0.11 3.12 4.05 86.36 0.35 3.47 16 27 H 0.07 3.69 6.26 -2.39 -0.01 3.67 16 28 H 0.05 1.87 6.89 -2.38 -0.02 1.86 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.06 2.10 7.00 -2.39 -0.02 2.08 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.18 6.45 -2.39 -0.02 1.17 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.08 6.60 -2.39 -0.02 1.06 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.77 6.76 -2.38 -0.02 1.75 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.08 2.57 3.99 -2.39 -0.01 2.56 16 Total: -1.00 -71.27 350.50 3.47 -67.80 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.94 Total: 14.25 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 4.35 Total: -10.14 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.20 Total: -75.63 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.65 Total: -43.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.27 3.47 -67.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886161330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.673 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds