Wall clock time and date at job start Tue Mar 31 2020 07:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47363 * 2 1 4 4 C 1.50706 * 109.47364 * 240.00263 * 2 1 3 5 5 H 1.08006 * 119.99509 * 240.00343 * 4 2 1 6 6 C 1.37871 * 120.00001 * 59.99807 * 4 2 1 7 7 N 1.31516 * 120.00285 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47345 * 60.00122 * 8 6 4 10 10 H 1.48501 * 109.46844 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46984 * 300.00005 * 8 6 4 12 12 C 1.50701 * 109.46905 * 119.99994 * 2 1 3 13 13 O 1.21276 * 119.99947 * 34.66628 * 12 2 1 14 14 N 1.34778 * 119.99860 * 214.66660 * 12 2 1 15 15 C 1.46932 * 120.60760 * 354.53868 * 14 12 2 16 16 C 1.53188 * 108.77604 * 233.57981 * 15 14 12 17 17 C 1.53041 * 109.33787 * 305.41402 * 16 15 14 18 18 C 1.53044 * 109.53794 * 61.35043 * 17 16 15 19 19 H 1.08993 * 109.49778 * 58.58436 * 18 17 16 20 20 C 1.53001 * 109.49691 * 178.68594 * 18 17 16 21 21 C 1.53178 * 109.54084 * 299.81913 * 20 18 17 22 22 C 1.53108 * 109.15785 * 183.24438 * 21 20 18 23 23 O 1.42902 * 109.48715 * 57.47101 * 22 21 20 24 24 C 1.42908 * 114.10110 * 298.89349 * 23 22 21 25 25 C 1.53086 * 109.41437 * 61.15554 * 24 23 22 26 26 C 1.46931 * 120.63032 * 174.56629 * 14 12 2 27 27 H 1.09004 * 109.47008 * 64.90784 * 1 2 3 28 28 H 1.08994 * 109.47278 * 184.90739 * 1 2 3 29 29 H 1.08999 * 109.47315 * 304.91237 * 1 2 3 30 30 H 0.96996 * 119.99893 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.56187 * 113.80884 * 15 14 12 32 32 H 1.09003 * 109.61667 * 353.37978 * 15 14 12 33 33 H 1.09000 * 109.50260 * 185.44456 * 16 15 14 34 34 H 1.09006 * 109.49812 * 65.37828 * 16 15 14 35 35 H 1.09008 * 109.46083 * 181.36372 * 17 16 15 36 36 H 1.08994 * 109.46145 * 301.34118 * 17 16 15 37 37 H 1.08995 * 109.54620 * 59.99535 * 20 18 17 38 38 H 1.09008 * 109.52367 * 303.05829 * 21 20 18 39 39 H 1.08995 * 109.52704 * 63.24663 * 21 20 18 40 40 H 1.08997 * 109.40341 * 297.49300 * 22 21 20 41 41 H 1.08989 * 109.48596 * 177.49975 * 22 21 20 42 42 H 1.09001 * 109.47610 * 301.17669 * 24 23 22 43 43 H 1.08991 * 109.49343 * 181.14589 * 24 23 22 44 44 H 1.09002 * 109.52261 * 182.48971 * 25 24 23 45 45 H 1.08997 * 109.57790 * 62.33074 * 25 24 23 46 46 H 1.09002 * 109.58582 * 6.59970 * 26 14 12 47 47 H 1.08994 * 109.70047 * 246.24765 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8271 -0.4198 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0322 -0.7104 1.2305 13 8 1.4199 -1.6576 1.6762 14 7 3.1619 -0.2931 1.8356 15 6 3.9783 0.7744 1.2416 16 6 5.4198 0.2746 1.1047 17 6 5.9180 -0.2145 2.4666 18 6 5.0462 -1.3789 2.9425 19 1 5.0832 -2.1844 2.2092 20 6 5.5651 -1.8884 4.2886 21 6 7.0106 -2.3704 4.1313 22 6 7.4938 -2.9526 5.4624 23 8 6.6241 -4.0137 5.8622 24 6 5.2691 -3.6105 6.0709 25 6 4.6959 -3.0568 4.7639 26 6 3.6006 -0.8975 3.1010 27 1 -0.3633 0.4358 -0.9307 28 1 -0.3633 -1.0238 0.0879 29 1 -0.3634 0.5881 0.8427 30 1 0.7096 1.1618 -3.4844 31 1 3.9558 1.6528 1.8866 32 1 3.5856 1.0309 0.2576 33 1 6.0555 1.0883 0.7556 34 1 5.4538 -0.5465 0.3886 35 1 6.9519 -0.5482 2.3767 36 1 5.8609 0.6003 3.1882 37 1 5.5270 -1.0835 5.0225 38 1 7.0562 -3.1399 3.3606 39 1 7.6456 -1.5312 3.8474 40 1 7.4877 -2.1717 6.2227 41 1 8.5066 -3.3376 5.3445 42 1 5.2340 -2.8381 6.8392 43 1 4.6794 -4.4691 6.3915 44 1 3.6770 -2.7079 4.9319 45 1 4.6924 -3.8400 4.0059 46 1 2.9581 -1.7440 3.3436 47 1 3.5472 -0.1576 3.8995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886161333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:02 Heat of formation + Delta-G solvation = -109.049016 kcal Electronic energy + Delta-G solvation = -25329.616709 eV Core-core repulsion = 21897.109071 eV Total energy + Delta-G solvation = -3432.507638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13782 -39.04192 -37.08358 -34.55444 -33.78831 -31.98352 -31.21539 -30.61927 -29.72612 -25.54783 -25.19711 -25.05393 -23.51692 -22.27257 -21.76753 -20.26985 -19.90392 -18.12590 -16.59925 -16.34070 -16.14299 -16.10781 -15.26048 -15.13285 -14.78819 -14.37678 -14.25260 -13.84608 -13.77696 -13.33921 -13.25621 -12.87457 -12.62173 -12.33469 -12.19167 -11.99575 -11.59246 -11.48579 -11.46133 -11.05408 -10.99842 -10.86283 -10.82117 -10.64503 -10.56661 -10.38929 -10.32952 -10.22852 -10.02991 -9.96719 -9.58221 -9.04576 -8.61253 -8.31751 -7.95838 -6.10970 -4.19093 3.27441 3.32124 3.34967 3.67449 3.73347 3.80967 4.38691 4.49859 4.56310 4.72055 4.86194 4.99807 5.06669 5.16246 5.19121 5.20570 5.26358 5.31812 5.44444 5.51509 5.53957 5.65194 5.69908 5.76824 5.78968 5.86190 5.95041 5.99893 6.01579 6.04168 6.15917 6.21603 6.32826 6.39338 6.45575 6.60406 6.80293 7.00338 7.03429 7.11128 7.26077 7.55438 7.74768 7.95255 8.16623 8.32249 8.81182 9.23039 9.46557 10.94616 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.003885 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.796246 B = 7205.916512 C = 7497.405978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.046 0.954 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.564 6.564 14 N -0.621 5.621 15 C 0.108 3.892 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.095 4.095 19 H 0.075 0.925 20 C -0.080 4.080 21 C -0.151 4.151 22 C 0.061 3.939 23 O -0.386 6.386 24 C 0.062 3.938 25 C -0.155 4.155 26 C 0.115 3.885 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.008 0.992 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.403 -0.770 13.766 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.322 3.678 13 O -0.443 6.443 14 N -0.356 5.356 15 C -0.015 4.015 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.114 4.114 19 H 0.093 0.907 20 C -0.099 4.099 21 C -0.189 4.189 22 C -0.016 4.016 23 O -0.305 6.305 24 C -0.015 4.015 25 C -0.193 4.193 26 C -0.008 4.008 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.022 -1.336 13.873 18.406 hybrid contribution 0.313 -0.083 -0.921 0.976 sum 12.335 -1.419 12.952 17.942 Atomic orbital electron populations 1.21653 0.96255 0.99740 1.00934 1.18923 0.94571 0.96289 0.89218 0.93623 1.20711 1.31905 1.12586 0.89253 0.92573 1.24894 0.94805 0.94915 0.98911 1.69866 1.36075 1.22639 1.23849 0.86561 0.79161 0.79927 0.81852 1.20114 1.21118 1.20155 1.21982 0.78176 0.83095 0.84531 1.90507 1.58126 1.29009 1.66617 1.48215 1.25195 1.38734 1.23406 1.21737 0.90322 0.88832 1.00572 1.21897 0.96502 1.01591 0.97208 1.21607 0.98714 0.97469 0.97215 1.21548 0.95288 0.98214 0.96361 0.90684 1.21164 0.94389 0.97128 0.97192 1.22289 0.96719 1.01397 0.98477 1.22571 0.93798 0.90201 0.94998 1.87920 1.19220 1.34769 1.88577 1.22590 0.82784 1.00034 0.96092 1.22309 0.99975 0.98663 0.98318 1.21476 0.94406 0.98400 0.86512 0.89162 0.94283 0.97284 0.92630 0.92868 0.87348 0.91206 0.91182 0.91971 0.92226 0.91130 0.90971 0.90576 0.93439 0.89157 0.93371 0.88981 0.90354 0.90785 0.89430 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.78 37.15 0.33 -2.92 16 2 C 0.03 0.78 1.84 -92.92 -0.17 0.61 16 3 H 0.05 1.14 6.20 -51.93 -0.32 0.82 16 4 C -0.51 -13.68 8.42 -34.44 -0.29 -13.97 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 7 N -0.89 -24.25 11.30 55.43 0.63 -23.62 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.53 12.47 6.63 -10.98 -0.07 12.39 16 13 O -0.56 -14.73 15.58 5.56 0.09 -14.65 16 14 N -0.62 -11.74 2.97 -172.76 -0.51 -12.26 16 15 C 0.11 1.78 6.15 -3.71 -0.02 1.75 16 16 C -0.13 -1.84 6.08 -26.61 -0.16 -2.00 16 17 C -0.11 -1.31 4.86 -26.69 -0.13 -1.44 16 18 C -0.09 -1.22 1.93 -90.50 -0.17 -1.40 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.08 -0.84 1.86 -90.43 -0.17 -1.01 16 21 C -0.15 -1.43 4.98 -26.58 -0.13 -1.57 16 22 C 0.06 0.56 6.84 37.21 0.25 0.81 16 23 O -0.39 -4.42 10.77 -35.23 -0.38 -4.80 16 24 C 0.06 0.61 6.84 37.20 0.25 0.87 16 25 C -0.16 -1.70 4.99 -26.59 -0.13 -1.84 16 26 C 0.12 1.80 5.21 -3.71 -0.02 1.78 16 27 H 0.09 2.42 5.96 -51.93 -0.31 2.11 16 28 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 2.05 5.52 -51.93 -0.29 1.77 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.64 6.45 -51.92 -0.33 0.30 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 39 H 0.08 0.63 6.60 -51.93 -0.34 0.29 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.70 8.14 -51.94 -0.42 0.28 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.87 6.76 -51.93 -0.35 0.52 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.52 5.70 -51.93 -0.30 1.23 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.24 353.06 -8.72 -38.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.10 Total: 1.43 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.73 Total: -6.22 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.11 Total: -35.88 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.29 Total: -19.44 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.24 -8.72 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886161333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.093 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds