Wall clock time and date at job start Tue Mar 31 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47245 * 2 1 4 4 O 1.45200 * 109.47412 * 120.00202 * 2 1 3 5 5 C 1.34229 * 116.99973 * 90.00016 * 4 2 1 6 6 O 1.20819 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99928 * 180.02562 * 5 4 2 8 8 C 1.53121 * 109.52414 * 60.30984 * 7 5 4 9 9 C 1.53035 * 109.27441 * 177.56051 * 8 7 5 10 10 N 1.46844 * 109.52467 * 300.81990 * 9 8 7 11 11 C 1.46910 * 111.00012 * 185.83922 * 10 9 8 12 12 C 1.53002 * 109.46752 * 73.13774 * 11 10 9 13 13 C 1.50705 * 115.54893 * 291.91803 * 12 11 10 14 14 H 1.08001 * 119.99765 * 142.89854 * 13 12 11 15 15 C 1.37877 * 120.00060 * 322.90030 * 13 12 11 16 16 N 1.31517 * 120.00032 * 336.28195 * 15 13 12 17 17 Si 1.86797 * 119.99766 * 156.28109 * 15 13 12 18 18 H 1.48492 * 109.47456 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46951 * 120.00222 * 17 15 13 20 20 H 1.48499 * 109.47074 * 239.99864 * 17 15 13 21 21 C 1.52997 * 117.49942 * 146.25046 * 12 11 10 22 22 C 1.53002 * 117.49930 * 77.58771 * 12 11 10 23 23 C 1.46846 * 111.19553 * 61.74798 * 10 9 8 24 24 C 1.53031 * 109.52424 * 298.25548 * 23 10 9 25 25 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46822 * 299.99809 * 1 2 3 27 27 H 1.08992 * 109.47371 * 59.99824 * 1 2 3 28 28 H 1.08997 * 109.47179 * 240.00249 * 2 1 3 29 29 H 1.08998 * 109.47131 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46930 * 300.00289 * 3 2 1 31 31 H 1.08997 * 109.46829 * 60.00035 * 3 2 1 32 32 H 1.09003 * 109.57122 * 300.15807 * 7 5 4 33 33 H 1.08993 * 109.50425 * 297.50103 * 8 7 5 34 34 H 1.08999 * 109.50022 * 57.62507 * 8 7 5 35 35 H 1.09006 * 109.45974 * 180.80865 * 9 8 7 36 36 H 1.09002 * 109.46720 * 60.84336 * 9 8 7 37 37 H 1.09002 * 109.46922 * 193.13582 * 11 10 9 38 38 H 1.09001 * 109.47037 * 313.13922 * 11 10 9 39 39 H 0.96999 * 119.99762 * 185.27930 * 16 15 13 40 40 H 1.08997 * 117.49741 * 359.97438 * 21 12 11 41 41 H 1.08990 * 117.50187 * 145.01718 * 21 12 11 42 42 H 1.08998 * 117.50094 * 214.97745 * 22 12 11 43 43 H 1.08996 * 117.49769 * 359.97438 * 22 12 11 44 44 H 1.09002 * 109.46362 * 178.23764 * 23 10 9 45 45 H 1.09006 * 109.46566 * 58.27237 * 23 10 9 46 46 H 1.09006 * 109.50213 * 299.24067 * 24 23 10 47 47 H 1.09002 * 109.50500 * 179.12215 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9974 -2.5749 0.0412 7 6 2.7184 -2.7854 2.2745 8 6 1.7188 -2.6580 3.4273 9 6 2.2027 -3.4989 4.6108 10 7 2.3248 -4.9028 4.1980 11 6 2.6538 -5.7617 5.3436 12 6 1.4212 -5.9142 6.2371 13 6 0.9854 -4.6667 6.9618 14 1 -0.0660 -4.4607 7.0978 15 6 1.9289 -3.7884 7.4510 16 7 3.1458 -4.2111 7.7161 17 14 1.4789 -1.9982 7.7372 18 1 0.0588 -1.7788 7.3627 19 1 1.6707 -1.6627 9.1711 20 1 2.3496 -1.1297 6.9049 21 6 1.2305 -7.2515 6.9555 22 6 0.3289 -6.8809 5.7752 23 6 3.3143 -5.0562 3.1240 24 6 2.8637 -4.2619 1.8960 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.6861 -2.3923 2.5864 33 1 1.6432 -1.6136 3.7298 34 1 0.7415 -3.0151 3.1027 35 1 1.4858 -3.4218 5.4283 36 1 3.1737 -3.1324 4.9439 37 1 2.9658 -6.7425 4.9845 38 1 3.4638 -5.3096 5.9159 39 1 3.7870 -3.6134 8.1315 40 1 1.9829 -8.0228 6.7912 41 1 0.7896 -7.2291 7.9520 42 1 -0.7048 -6.6149 5.9958 43 1 0.4883 -7.4079 4.8345 44 1 3.4050 -6.1103 2.8615 45 1 4.2803 -4.6825 3.4639 46 1 1.9043 -4.6442 1.5472 47 1 3.6061 -4.3633 1.1044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886732725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:25 Heat of formation + Delta-G solvation = -64.418851 kcal Electronic energy + Delta-G solvation = -25400.858126 eV Core-core repulsion = 21970.285797 eV Total energy + Delta-G solvation = -3430.572329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64660 -38.47417 -36.90782 -35.98892 -33.37278 -32.53353 -32.25787 -30.20870 -27.48395 -26.68674 -25.77355 -23.62381 -22.52149 -21.65674 -21.00758 -20.47172 -19.20622 -19.00835 -17.66274 -16.40761 -16.09282 -15.96085 -14.92828 -14.74458 -14.52568 -14.21033 -14.03716 -13.71241 -13.40831 -13.22617 -13.03076 -12.77417 -12.51165 -12.45431 -12.24895 -11.98080 -11.86525 -11.66857 -11.21780 -11.07887 -10.95291 -10.88575 -10.73798 -10.64375 -10.53913 -10.35933 -10.32816 -10.14439 -9.99259 -9.77675 -9.18966 -8.97875 -8.58064 -8.04025 -7.22016 -6.17164 -4.03862 2.33680 2.72628 3.18403 3.30532 3.34500 4.28345 4.60683 4.65501 4.73444 4.75275 4.94168 4.96004 5.01358 5.14626 5.31510 5.43561 5.51102 5.56840 5.64505 5.67923 5.70008 5.83667 5.86069 5.97270 6.03803 6.08801 6.15521 6.16948 6.27550 6.36473 6.47187 6.52687 6.56345 6.68575 6.78551 6.85458 6.89061 7.03323 7.19669 7.29454 7.45692 7.48211 7.86344 7.88484 8.15964 8.21052 8.47636 8.85265 9.40972 10.84402 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.004809 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.776318 B = 5821.216293 C = 6728.307148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.352 6.352 5 C 0.470 3.530 6 O -0.513 6.513 7 C -0.081 4.081 8 C -0.108 4.108 9 C 0.038 3.962 10 N -0.524 5.524 11 C 0.089 3.911 12 C 0.063 3.937 13 C -0.491 4.491 14 H 0.063 0.937 15 C 0.080 3.920 16 N -0.863 5.863 17 Si 0.861 3.139 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.204 4.204 22 C -0.197 4.197 23 C 0.054 3.946 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.262 0.738 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 7.313 -12.338 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.269 6.269 5 C 0.313 3.687 6 O -0.401 6.401 7 C -0.100 4.100 8 C -0.146 4.146 9 C -0.089 4.089 10 N -0.248 5.248 11 C -0.038 4.038 12 C 0.062 3.938 13 C -0.528 4.528 14 H 0.082 0.918 15 C -0.124 4.124 16 N -0.498 5.498 17 Si 0.686 3.314 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.242 4.242 22 C -0.235 4.235 23 C -0.075 4.075 24 C -0.132 4.132 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.028 7.107 -12.854 14.688 hybrid contribution 0.625 1.173 0.335 1.371 sum 0.597 8.280 -12.518 15.021 Atomic orbital electron populations 1.22204 0.94355 1.03227 1.02931 1.22691 0.94687 0.92999 0.87356 1.21883 1.01996 0.93685 1.03060 1.86616 1.76895 1.22662 1.40722 1.24059 0.73680 0.80845 0.90080 1.90606 1.48396 1.69993 1.31068 1.21280 1.01451 0.95306 0.91970 1.21711 0.98091 1.00637 0.94147 1.22833 1.01959 0.86637 0.97477 1.61826 1.45587 1.07461 1.09911 1.21671 0.98992 0.93801 0.89362 1.18794 0.91831 0.88672 0.94527 1.20467 0.92780 1.03429 1.36089 0.91845 1.24948 0.94950 0.98315 0.94166 1.70008 1.05659 1.35192 1.38981 0.87087 0.79674 0.86473 0.78136 1.18970 1.21027 1.19981 1.22950 1.02915 1.02656 0.95713 1.22743 0.96199 1.07798 0.96746 1.22058 0.93689 0.99360 0.92354 1.21464 1.02961 0.91333 0.97418 0.91834 0.91411 0.90946 0.89987 0.91797 0.90580 0.91305 0.88164 0.91292 0.90883 0.84639 0.96021 0.94652 0.90355 0.92747 0.92106 0.90624 0.91120 0.91415 0.91156 0.95793 0.90335 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.55 37.16 0.35 -1.41 16 2 C 0.08 0.89 3.18 -26.73 -0.09 0.80 16 3 C -0.15 -1.29 9.57 37.16 0.36 -0.93 16 4 O -0.35 -5.04 9.81 -39.26 -0.39 -5.42 16 5 C 0.47 7.34 7.23 36.01 0.26 7.60 16 6 O -0.51 -8.84 15.20 -18.74 -0.28 -9.12 16 7 C -0.08 -1.27 2.70 -91.65 -0.25 -1.51 16 8 C -0.11 -1.89 5.31 -26.65 -0.14 -2.03 16 9 C 0.04 0.78 4.00 -3.84 -0.02 0.77 16 10 N -0.52 -10.70 4.60 -234.66 -1.08 -11.78 16 11 C 0.09 2.00 4.73 -3.82 -0.02 1.98 16 12 C 0.06 1.50 1.89 -155.66 -0.29 1.21 16 13 C -0.49 -12.65 6.99 -34.44 -0.24 -12.89 16 14 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 15 C 0.08 2.04 3.36 -17.82 -0.06 1.98 16 16 N -0.86 -22.60 11.34 55.43 0.63 -21.97 16 17 Si 0.86 19.48 28.02 -169.99 -4.76 14.72 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.20 -4.63 9.91 -26.69 -0.26 -4.89 16 22 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 23 C 0.05 0.93 5.44 -3.84 -0.02 0.91 16 24 C -0.09 -1.47 4.68 -26.66 -0.12 -1.60 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.98 7.16 -51.93 -0.37 0.61 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.14 3.15 2.65 -51.93 -0.14 3.01 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.75 7.77 -51.93 -0.40 0.35 16 38 H 0.08 1.96 5.75 -51.93 -0.30 1.66 16 39 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -27.09 364.64 -9.55 -36.64 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.36 Total: 6.06 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.81 Total: -14.62 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.45 Total: -33.75 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.67 Total: -14.54 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.76 Total: 14.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.09 -9.55 -36.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886732725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.774 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds