Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47245 * 2 1 4 4 O 1.45200 * 109.47412 * 120.00202 * 2 1 3 5 5 C 1.34229 * 116.99973 * 90.00016 * 4 2 1 6 6 O 1.20819 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99928 * 180.02562 * 5 4 2 8 8 C 1.53121 * 109.52414 * 60.30984 * 7 5 4 9 9 C 1.53035 * 109.27441 * 177.56051 * 8 7 5 10 10 N 1.46844 * 109.52467 * 300.81990 * 9 8 7 11 11 C 1.46910 * 111.00012 * 185.83922 * 10 9 8 12 12 C 1.53002 * 109.46752 * 73.13774 * 11 10 9 13 13 C 1.50705 * 115.54893 * 291.91803 * 12 11 10 14 14 H 1.08001 * 119.99765 * 142.89854 * 13 12 11 15 15 C 1.37877 * 120.00060 * 322.90030 * 13 12 11 16 16 N 1.31517 * 120.00032 * 336.28195 * 15 13 12 17 17 Si 1.86797 * 119.99766 * 156.28109 * 15 13 12 18 18 H 1.48492 * 109.47456 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46951 * 120.00222 * 17 15 13 20 20 H 1.48499 * 109.47074 * 239.99864 * 17 15 13 21 21 C 1.52997 * 117.49942 * 146.25046 * 12 11 10 22 22 C 1.53002 * 117.49930 * 77.58771 * 12 11 10 23 23 C 1.46846 * 111.19553 * 61.74798 * 10 9 8 24 24 C 1.53031 * 109.52424 * 298.25548 * 23 10 9 25 25 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46822 * 299.99809 * 1 2 3 27 27 H 1.08992 * 109.47371 * 59.99824 * 1 2 3 28 28 H 1.08997 * 109.47179 * 240.00249 * 2 1 3 29 29 H 1.08998 * 109.47131 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46930 * 300.00289 * 3 2 1 31 31 H 1.08997 * 109.46829 * 60.00035 * 3 2 1 32 32 H 1.09003 * 109.57122 * 300.15807 * 7 5 4 33 33 H 1.08993 * 109.50425 * 297.50103 * 8 7 5 34 34 H 1.08999 * 109.50022 * 57.62507 * 8 7 5 35 35 H 1.09006 * 109.45974 * 180.80865 * 9 8 7 36 36 H 1.09002 * 109.46720 * 60.84336 * 9 8 7 37 37 H 1.09002 * 109.46922 * 193.13582 * 11 10 9 38 38 H 1.09001 * 109.47037 * 313.13922 * 11 10 9 39 39 H 0.96999 * 119.99762 * 185.27930 * 16 15 13 40 40 H 1.08997 * 117.49741 * 359.97438 * 21 12 11 41 41 H 1.08990 * 117.50187 * 145.01718 * 21 12 11 42 42 H 1.08998 * 117.50094 * 214.97745 * 22 12 11 43 43 H 1.08996 * 117.49769 * 359.97438 * 22 12 11 44 44 H 1.09002 * 109.46362 * 178.23764 * 23 10 9 45 45 H 1.09006 * 109.46566 * 58.27237 * 23 10 9 46 46 H 1.09006 * 109.50213 * 299.24067 * 24 23 10 47 47 H 1.09002 * 109.50500 * 179.12215 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9974 -2.5749 0.0412 7 6 2.7184 -2.7854 2.2745 8 6 1.7188 -2.6580 3.4273 9 6 2.2027 -3.4989 4.6108 10 7 2.3248 -4.9028 4.1980 11 6 2.6538 -5.7617 5.3436 12 6 1.4212 -5.9142 6.2371 13 6 0.9854 -4.6667 6.9618 14 1 -0.0660 -4.4607 7.0978 15 6 1.9289 -3.7884 7.4510 16 7 3.1458 -4.2111 7.7161 17 14 1.4789 -1.9982 7.7372 18 1 0.0588 -1.7788 7.3627 19 1 1.6707 -1.6627 9.1711 20 1 2.3496 -1.1297 6.9049 21 6 1.2305 -7.2515 6.9555 22 6 0.3289 -6.8809 5.7752 23 6 3.3143 -5.0562 3.1240 24 6 2.8637 -4.2619 1.8960 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.6861 -2.3923 2.5864 33 1 1.6432 -1.6136 3.7298 34 1 0.7415 -3.0151 3.1027 35 1 1.4858 -3.4218 5.4283 36 1 3.1737 -3.1324 4.9439 37 1 2.9658 -6.7425 4.9845 38 1 3.4638 -5.3096 5.9159 39 1 3.7870 -3.6134 8.1315 40 1 1.9829 -8.0228 6.7912 41 1 0.7896 -7.2291 7.9520 42 1 -0.7048 -6.6149 5.9958 43 1 0.4883 -7.4079 4.8345 44 1 3.4050 -6.1103 2.8615 45 1 4.2803 -4.6825 3.4639 46 1 1.9043 -4.6442 1.5472 47 1 3.6061 -4.3633 1.1044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886732725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -77.685664 kcal Electronic energy + Delta-G solvation = -25401.433418 eV Core-core repulsion = 21970.285797 eV Total energy + Delta-G solvation = -3431.147621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84307 -39.98288 -38.23347 -37.51659 -34.50296 -34.31292 -33.66862 -31.67106 -28.25346 -28.21498 -27.68018 -25.05161 -23.94732 -22.89686 -22.73998 -21.62010 -20.87058 -20.58295 -18.83855 -18.04637 -17.52866 -17.14265 -16.68076 -16.27463 -15.79021 -15.73099 -15.46103 -14.94710 -14.67810 -14.67248 -14.46252 -14.07984 -13.88223 -13.67446 -13.41579 -13.21188 -13.17021 -12.83153 -12.73967 -12.69335 -12.53155 -12.24948 -12.21460 -12.04238 -11.98900 -11.94097 -11.72909 -11.51851 -11.50414 -11.22799 -11.00253 -10.78891 -10.41585 -9.90109 -8.89245 -8.11352 -6.02563 1.11555 1.36115 1.44700 1.52174 1.65113 2.40212 2.93968 3.22601 3.53258 3.74276 3.78398 3.79786 3.86611 3.94210 4.11637 4.19756 4.24539 4.39611 4.50245 4.58882 4.64208 4.64572 4.71180 4.74091 4.77698 4.79391 4.81964 4.85952 4.91785 4.99229 5.07312 5.10392 5.11526 5.18946 5.20043 5.21893 5.30081 5.42387 5.49560 5.58144 5.59940 5.66564 5.94909 6.47761 6.51769 6.61156 6.70606 6.89534 7.44169 8.89225 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.004809 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.776318 B = 5821.216293 C = 6728.307148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 C -0.144 4.144 4 O -0.358 6.358 5 C 0.476 3.524 6 O -0.531 6.531 7 C -0.078 4.078 8 C -0.100 4.100 9 C 0.043 3.957 10 N -0.528 5.528 11 C 0.098 3.902 12 C 0.038 3.962 13 C -0.507 4.507 14 H 0.048 0.952 15 C 0.058 3.942 16 N -0.884 5.884 17 Si 0.903 3.097 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.205 4.205 22 C -0.181 4.181 23 C 0.054 3.946 24 C -0.085 4.085 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.005 0.995 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 8.392 -13.961 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 C -0.201 4.201 4 O -0.275 6.275 5 C 0.320 3.680 6 O -0.420 6.420 7 C -0.097 4.097 8 C -0.138 4.138 9 C -0.085 4.085 10 N -0.253 5.253 11 C -0.029 4.029 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.145 4.145 16 N -0.521 5.521 17 Si 0.728 3.272 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.243 4.243 22 C -0.218 4.218 23 C -0.074 4.074 24 C -0.123 4.123 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.037 8.198 -14.481 16.640 hybrid contribution 0.574 0.843 0.832 1.316 sum 0.611 9.042 -13.649 16.384 Atomic orbital electron populations 1.22214 0.93584 1.02292 1.04394 1.23054 0.95446 0.94173 0.86010 1.21907 1.02042 0.91744 1.04390 1.86601 1.76711 1.21921 1.42266 1.23866 0.73247 0.81309 0.89549 1.90599 1.49251 1.70484 1.31712 1.21210 1.01444 0.95637 0.91423 1.21572 0.98175 1.00337 0.93696 1.22630 1.00339 0.87337 0.98151 1.61815 1.46816 1.06987 1.09650 1.21460 0.97433 0.94372 0.89660 1.18942 0.93304 0.88535 0.95511 1.20545 0.92111 1.04858 1.36833 0.93415 1.25318 0.94748 1.00606 0.93823 1.70083 1.06323 1.36048 1.39623 0.86417 0.79606 0.83331 0.77841 1.18814 1.21259 1.19016 1.22935 1.03451 1.02459 0.95503 1.22713 0.95601 1.06501 0.96982 1.22135 0.92941 1.00553 0.91757 1.21375 1.02929 0.90950 0.97000 0.93907 0.91175 0.88297 0.90615 0.91768 0.87993 0.91195 0.86950 0.90516 0.91441 0.87056 0.97657 0.93704 0.93003 0.92737 0.90816 0.91711 0.91280 0.89873 0.89915 0.95683 0.91348 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.55 71.98 0.69 -2.49 16 2 C 0.07 1.42 3.18 30.60 0.10 1.51 16 3 C -0.14 -2.11 9.57 71.98 0.69 -1.42 16 4 O -0.36 -9.68 9.81 -51.41 -0.50 -10.19 16 5 C 0.48 14.17 7.23 71.24 0.52 14.69 16 6 O -0.53 -17.59 15.20 21.99 0.33 -17.25 16 7 C -0.08 -2.32 2.70 -11.46 -0.03 -2.36 16 8 C -0.10 -3.40 5.31 30.65 0.16 -3.24 16 9 C 0.04 1.76 4.00 86.33 0.35 2.11 16 10 N -0.53 -21.27 4.60 -896.33 -4.13 -25.39 16 11 C 0.10 4.41 4.73 86.30 0.41 4.82 16 12 C 0.04 1.82 1.89 -52.93 -0.10 1.72 16 13 C -0.51 -26.44 6.99 25.60 0.18 -26.26 16 14 H 0.05 2.57 7.92 -2.91 -0.02 2.55 16 15 C 0.06 2.94 3.36 84.65 0.28 3.23 16 16 N -0.88 -46.85 11.34 21.45 0.24 -46.60 16 17 Si 0.90 40.06 28.02 68.60 1.92 41.98 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.20 -9.24 9.91 30.62 0.30 -8.93 16 22 C -0.18 -7.78 9.96 30.62 0.30 -7.48 16 23 C 0.05 1.79 5.44 86.32 0.47 2.26 16 24 C -0.08 -2.51 4.68 30.64 0.14 -2.36 16 25 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.70 7.16 -2.39 -0.02 1.68 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.11 5.20 2.65 -2.38 -0.01 5.19 16 36 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.04 1.88 7.77 -2.39 -0.02 1.86 16 38 H 0.05 2.62 5.75 -2.39 -0.01 2.61 16 39 H 0.26 13.34 8.32 -92.71 -0.77 12.57 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.07 2.96 8.14 -2.39 -0.02 2.95 16 43 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.08 2.52 7.95 -2.39 -0.02 2.50 16 45 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -57.47 364.64 3.25 -54.22 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.92 Total: 27.45 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.46 Total: -24.20 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -3.88 Total: -72.00 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.17 Total: -27.44 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.92 Total: 41.98 kcal Total: -57.47 3.25 -54.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886732725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.469 kcal (2) G-P(sol) polarization free energy of solvation -57.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds