Wall clock time and date at job start Tue Mar 31 2020 07:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 119.99873 * 2 1 4 4 C 1.50697 * 120.00393 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.46862 * 330.00572 * 4 2 1 6 6 C 1.53006 * 109.47239 * 89.99728 * 4 2 1 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 10 10 N 1.46505 * 109.46958 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99797 * 84.99979 * 10 8 7 12 12 O 1.21278 * 120.00140 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99981 * 179.97438 * 11 10 8 14 14 C 1.52994 * 109.47372 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47494 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47260 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46946 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00483 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99985 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99399 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47347 * 89.99926 * 21 19 17 23 23 H 1.48501 * 109.46824 * 209.99965 * 21 19 17 24 24 H 1.48501 * 109.47044 * 329.99601 * 21 19 17 25 25 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 26 26 C 1.52997 * 109.47466 * 210.00017 * 4 2 1 27 27 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47065 * 300.00154 * 1 2 3 29 29 H 1.08995 * 109.47301 * 60.00341 * 1 2 3 30 30 H 1.09001 * 109.47002 * 60.00070 * 6 4 2 31 31 H 1.09000 * 109.47050 * 300.00336 * 6 4 2 32 32 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 34 34 H 0.97001 * 119.99745 * 265.00017 * 10 8 7 35 35 H 1.08998 * 109.47252 * 300.00615 * 13 11 10 36 36 H 1.09005 * 109.46927 * 60.00159 * 13 11 10 37 37 H 1.08998 * 109.47182 * 300.00349 * 14 13 11 38 38 H 1.08996 * 109.47224 * 60.00130 * 14 13 11 39 39 H 1.08998 * 109.46848 * 300.00133 * 15 14 13 40 40 H 1.08996 * 109.47122 * 59.99647 * 15 14 13 41 41 H 1.09000 * 109.46857 * 299.99215 * 16 15 14 42 42 H 1.08996 * 109.47573 * 59.99639 * 16 15 14 43 43 H 0.97006 * 119.99262 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47368 * 179.97438 * 25 8 7 45 45 H 1.09001 * 109.47372 * 59.99964 * 25 8 7 46 46 H 1.09002 * 109.47153 * 59.99773 * 26 4 2 47 47 H 1.09001 * 109.46832 * 299.99964 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.6715 -2.0645 0.5147 6 6 2.5156 -1.7474 -1.4418 7 6 3.2801 -3.0727 -1.4412 8 6 4.6170 -2.8898 -0.7199 9 1 5.2063 -2.1307 -1.2339 10 7 5.3493 -4.1587 -0.7198 11 6 6.1134 -4.4958 -1.7777 12 8 6.1951 -3.7485 -2.7294 13 6 6.8672 -5.8007 -1.7774 14 6 7.6505 -5.9375 -3.0845 15 6 8.4153 -7.2626 -3.0845 16 6 9.1992 -7.3990 -4.3913 17 6 9.9529 -8.7040 -4.3910 18 1 9.8806 -9.3693 -3.5434 19 6 10.7351 -9.0486 -5.4730 20 7 10.8228 -8.2387 -6.5054 21 14 11.6688 -10.6665 -5.4730 22 1 10.8176 -11.7294 -6.0652 23 1 12.9099 -10.5217 -6.2755 24 1 12.0215 -11.0344 -4.0782 25 6 4.3620 -2.4476 0.7224 26 6 3.5974 -1.1218 0.7217 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.1046 -0.9879 -1.9560 31 1 1.5632 -1.8780 -1.9555 32 1 3.4621 -3.3876 -2.4687 33 1 2.6907 -3.8319 -0.9271 34 1 5.2842 -4.7562 0.0416 35 1 7.5593 -5.8203 -0.9356 36 1 6.1624 -6.6274 -1.6876 37 1 6.9587 -5.9177 -3.9265 38 1 8.3553 -5.1109 -3.1739 39 1 9.1072 -7.2828 -2.2425 40 1 7.7103 -8.0890 -2.9953 41 1 8.5076 -7.3788 -5.2336 42 1 9.9042 -6.5726 -4.4801 43 1 11.3734 -8.4810 -7.2665 44 1 5.3144 -2.3177 1.2365 45 1 3.7726 -3.2068 1.2365 46 1 3.4158 -0.8066 1.7493 47 1 4.1865 -0.3623 0.2075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887251178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:52 Heat of formation + Delta-G solvation = -126.111328 kcal Electronic energy + Delta-G solvation = -23077.323041 eV Core-core repulsion = 19644.075526 eV Total energy + Delta-G solvation = -3433.247515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64842 -39.68725 -37.82941 -34.91448 -34.30668 -32.61016 -31.53916 -31.08355 -29.98880 -28.90421 -25.67935 -23.69722 -23.20432 -22.11348 -20.67092 -20.18807 -19.93136 -19.66368 -16.98488 -16.62275 -16.30256 -16.05829 -15.81509 -15.53837 -15.39467 -14.61000 -14.46195 -14.25886 -13.94267 -13.75785 -13.57078 -12.99989 -12.86062 -12.65394 -12.59587 -12.49229 -12.13264 -12.03475 -11.66029 -11.64739 -11.56448 -11.53658 -10.97499 -10.92585 -10.68314 -10.51657 -10.48662 -10.38804 -9.94004 -9.71052 -9.59187 -9.19587 -9.13441 -8.95979 -8.28964 -5.93748 -3.96183 1.51702 2.75419 3.08779 3.34912 3.40895 3.44117 3.56750 4.17509 4.23658 4.49611 4.50669 4.60917 4.75363 4.76662 4.90154 4.91499 4.92948 5.02583 5.06374 5.09040 5.26185 5.35238 5.36772 5.39636 5.41879 5.47003 5.57242 5.63860 5.73195 5.75167 5.86753 5.92650 6.00790 6.16476 6.32934 6.39850 6.57601 6.86516 7.04656 7.07959 7.22270 7.47297 7.75937 7.92186 8.07891 8.30492 8.49651 9.11567 9.67288 11.17549 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.051096 B = 0.001916 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.858371 B =14610.079404 C =14783.173183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.359 3.641 3 O -0.456 6.456 4 C -0.139 4.139 5 H 0.097 0.903 6 C -0.103 4.103 7 C -0.127 4.127 8 C 0.142 3.858 9 H 0.088 0.912 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.124 4.124 26 C -0.104 4.104 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.516 13.354 18.453 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.234 3.766 3 O -0.329 6.329 4 C -0.158 4.158 5 H 0.115 0.885 6 C -0.141 4.141 7 C -0.166 4.166 8 C 0.038 3.962 9 H 0.106 0.894 10 N -0.388 5.388 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.179 4.179 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.162 4.162 26 C -0.142 4.142 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.028 14.475 17.573 31.679 hybrid contribution 0.354 -1.310 0.328 1.396 sum -21.674 13.164 17.901 31.040 Atomic orbital electron populations 1.22302 0.94481 1.04704 1.04779 1.24683 0.91916 0.90132 0.69823 1.90418 1.72001 1.35168 1.35361 1.21875 0.97944 0.96962 0.98981 0.88470 1.21391 1.01026 0.98001 0.93690 1.21910 0.95747 0.96838 1.02066 1.20942 0.92584 0.86700 0.96015 0.89392 1.46174 1.49467 1.22025 1.21168 1.21109 0.78436 0.88689 0.81800 1.90705 1.63268 1.52752 1.34267 1.21796 0.99779 0.94029 1.02296 1.21444 0.98703 0.99598 0.94374 1.21649 0.98078 0.94064 1.01004 1.19099 0.94683 0.96708 0.91288 1.21290 1.27626 1.04365 1.02583 0.92761 1.25050 0.96885 0.96983 0.95700 1.69980 1.40159 1.36482 1.06812 0.86606 0.79417 0.84089 0.77939 1.20726 1.21262 1.19939 1.21800 1.01053 0.97482 0.95893 1.21400 0.94648 0.97572 1.00618 0.89934 0.89031 0.89000 0.91012 0.90990 0.90658 0.91499 0.76769 0.89206 0.89208 0.91851 0.91833 0.93503 0.93508 0.96597 0.96582 0.93062 0.90828 0.91230 0.91305 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.79 10.32 36.01 0.37 -0.41 16 2 C 0.36 2.47 6.32 -29.04 -0.18 2.29 16 3 O -0.46 -4.98 16.92 6.00 0.10 -4.88 16 4 C -0.14 -0.79 2.40 -91.77 -0.22 -1.01 16 5 H 0.10 0.36 8.05 -51.93 -0.42 -0.06 16 6 C -0.10 -0.70 5.19 -26.73 -0.14 -0.84 16 7 C -0.13 -1.02 5.49 -26.73 -0.15 -1.17 16 8 C 0.14 1.26 2.45 -67.93 -0.17 1.09 16 9 H 0.09 1.02 7.57 -51.93 -0.39 0.63 16 10 N -0.74 -6.92 5.08 -53.81 -0.27 -7.19 16 11 C 0.51 6.95 7.79 -10.99 -0.09 6.86 16 12 O -0.53 -9.61 15.64 5.56 0.09 -9.53 16 13 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 14 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.12 -0.77 5.39 -26.71 -0.14 -0.92 16 26 C -0.10 -0.69 4.80 -26.71 -0.13 -0.82 16 27 H 0.08 0.16 7.94 -51.93 -0.41 -0.25 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.56 8.60 -40.82 -0.35 2.21 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.65 7.86 -51.93 -0.41 0.25 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -35.50 381.25 -9.14 -44.64 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -8.71 Total: -4.00 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.81 Total: -14.83 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.46 Total: -34.12 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.19 Total: -14.41 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.50 -9.14 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887251178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.472 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds