Wall clock time and date at job start Tue Mar 31 2020 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 119.99873 * 2 1 4 4 C 1.50697 * 120.00393 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.46862 * 330.00572 * 4 2 1 6 6 C 1.53006 * 109.47239 * 89.99728 * 4 2 1 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 10 10 N 1.46505 * 109.46958 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99797 * 84.99979 * 10 8 7 12 12 O 1.21278 * 120.00140 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99981 * 179.97438 * 11 10 8 14 14 C 1.52994 * 109.47372 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47494 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47260 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46946 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00483 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99985 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99399 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47347 * 89.99926 * 21 19 17 23 23 H 1.48501 * 109.46824 * 209.99965 * 21 19 17 24 24 H 1.48501 * 109.47044 * 329.99601 * 21 19 17 25 25 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 26 26 C 1.52997 * 109.47466 * 210.00017 * 4 2 1 27 27 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47065 * 300.00154 * 1 2 3 29 29 H 1.08995 * 109.47301 * 60.00341 * 1 2 3 30 30 H 1.09001 * 109.47002 * 60.00070 * 6 4 2 31 31 H 1.09000 * 109.47050 * 300.00336 * 6 4 2 32 32 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 34 34 H 0.97001 * 119.99745 * 265.00017 * 10 8 7 35 35 H 1.08998 * 109.47252 * 300.00615 * 13 11 10 36 36 H 1.09005 * 109.46927 * 60.00159 * 13 11 10 37 37 H 1.08998 * 109.47182 * 300.00349 * 14 13 11 38 38 H 1.08996 * 109.47224 * 60.00130 * 14 13 11 39 39 H 1.08998 * 109.46848 * 300.00133 * 15 14 13 40 40 H 1.08996 * 109.47122 * 59.99647 * 15 14 13 41 41 H 1.09000 * 109.46857 * 299.99215 * 16 15 14 42 42 H 1.08996 * 109.47573 * 59.99639 * 16 15 14 43 43 H 0.97006 * 119.99262 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47368 * 179.97438 * 25 8 7 45 45 H 1.09001 * 109.47372 * 59.99964 * 25 8 7 46 46 H 1.09002 * 109.47153 * 59.99773 * 26 4 2 47 47 H 1.09001 * 109.46832 * 299.99964 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 1 1.6715 -2.0645 0.5147 6 6 2.5156 -1.7474 -1.4418 7 6 3.2801 -3.0727 -1.4412 8 6 4.6170 -2.8898 -0.7199 9 1 5.2063 -2.1307 -1.2339 10 7 5.3493 -4.1587 -0.7198 11 6 6.1134 -4.4958 -1.7777 12 8 6.1951 -3.7485 -2.7294 13 6 6.8672 -5.8007 -1.7774 14 6 7.6505 -5.9375 -3.0845 15 6 8.4153 -7.2626 -3.0845 16 6 9.1992 -7.3990 -4.3913 17 6 9.9529 -8.7040 -4.3910 18 1 9.8806 -9.3693 -3.5434 19 6 10.7351 -9.0486 -5.4730 20 7 10.8228 -8.2387 -6.5054 21 14 11.6688 -10.6665 -5.4730 22 1 10.8176 -11.7294 -6.0652 23 1 12.9099 -10.5217 -6.2755 24 1 12.0215 -11.0344 -4.0782 25 6 4.3620 -2.4476 0.7224 26 6 3.5974 -1.1218 0.7217 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.1046 -0.9879 -1.9560 31 1 1.5632 -1.8780 -1.9555 32 1 3.4621 -3.3876 -2.4687 33 1 2.6907 -3.8319 -0.9271 34 1 5.2842 -4.7562 0.0416 35 1 7.5593 -5.8203 -0.9356 36 1 6.1624 -6.6274 -1.6876 37 1 6.9587 -5.9177 -3.9265 38 1 8.3553 -5.1109 -3.1739 39 1 9.1072 -7.2828 -2.2425 40 1 7.7103 -8.0890 -2.9953 41 1 8.5076 -7.3788 -5.2336 42 1 9.9042 -6.5726 -4.4801 43 1 11.3734 -8.4810 -7.2665 44 1 5.3144 -2.3177 1.2365 45 1 3.7726 -3.2068 1.2365 46 1 3.4158 -0.8066 1.7493 47 1 4.1865 -0.3623 0.2075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887251178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:51 Heat of formation + Delta-G solvation = -148.897586 kcal Electronic energy + Delta-G solvation = -23078.311128 eV Core-core repulsion = 19644.075526 eV Total energy + Delta-G solvation = -3434.235602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35131 -40.58643 -38.60790 -36.61956 -35.20377 -34.59485 -32.20984 -31.81328 -31.24426 -29.76120 -27.39691 -24.80551 -23.79315 -23.51364 -21.76038 -21.42304 -21.00204 -20.24339 -18.42133 -17.90580 -17.38896 -16.91008 -16.86395 -16.50755 -16.29059 -15.96599 -15.57830 -15.06327 -14.99646 -14.70346 -14.52740 -14.21819 -13.81501 -13.60051 -13.46775 -13.32863 -13.21004 -13.14266 -12.95472 -12.80759 -12.58875 -12.33070 -12.24824 -12.16456 -12.13416 -12.10567 -11.50977 -11.37643 -11.34750 -11.30562 -11.15046 -10.75224 -10.54858 -10.39204 -10.01484 -8.18430 -6.30764 0.98815 1.40535 1.43048 1.54119 1.69456 2.21788 2.42413 3.10681 3.14172 3.62378 3.67134 3.87480 3.98693 4.05704 4.13287 4.15891 4.19935 4.35097 4.36683 4.45908 4.48398 4.63853 4.67950 4.70480 4.71779 4.73620 4.84406 4.86556 4.88757 5.03133 5.04130 5.11472 5.15358 5.20309 5.24681 5.29933 5.33992 5.36267 5.40388 5.56050 5.60610 5.78476 5.88359 6.25460 6.58525 6.63407 6.87820 7.35060 7.38853 8.93798 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.051096 B = 0.001916 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.858371 B =14610.079404 C =14783.173183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.360 3.640 3 O -0.507 6.507 4 C -0.134 4.134 5 H 0.135 0.865 6 C -0.100 4.100 7 C -0.121 4.121 8 C 0.139 3.861 9 H 0.049 0.951 10 N -0.713 5.713 11 C 0.510 3.490 12 O -0.591 6.591 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.112 4.112 26 C -0.105 4.105 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.419 0.581 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.262 0.738 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 10.925 21.596 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.238 3.762 3 O -0.384 6.384 4 C -0.153 4.153 5 H 0.153 0.847 6 C -0.138 4.138 7 C -0.159 4.159 8 C 0.034 3.966 9 H 0.067 0.933 10 N -0.366 5.366 11 C 0.298 3.702 12 O -0.471 6.471 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.150 4.150 26 C -0.144 4.144 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.256 0.744 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.875 12.021 20.783 33.859 hybrid contribution 0.901 -0.493 -0.681 1.233 sum -22.974 11.527 20.102 32.631 Atomic orbital electron populations 1.22340 0.91734 1.06726 1.05123 1.25275 0.93512 0.89650 0.67715 1.90414 1.73244 1.36877 1.37870 1.21921 0.97797 0.97426 0.98131 0.84700 1.21340 1.01240 0.96538 0.94681 1.21838 0.95626 0.98095 1.00365 1.21010 0.92356 0.85402 0.97850 0.93297 1.45952 1.47835 1.22275 1.20501 1.21217 0.78662 0.88417 0.81913 1.90699 1.65352 1.54400 1.36626 1.21670 1.00339 0.94779 0.99938 1.21241 0.98103 0.97250 0.96874 1.21446 0.98103 0.95969 0.97762 1.19070 0.94033 0.95191 0.93685 1.21765 1.27903 1.05165 1.03142 0.91476 1.26120 0.97976 1.01284 0.95153 1.70143 1.41119 1.38907 1.07677 0.85360 0.77691 0.78755 0.78697 1.19658 1.20997 1.18275 1.21729 1.01634 0.97869 0.93740 1.21388 0.94967 0.97027 1.00983 0.87108 0.88240 0.88935 0.94005 0.89075 0.93824 0.88629 0.74353 0.86409 0.86138 0.93990 0.94199 0.92084 0.91910 0.99749 0.99847 0.92885 0.90824 0.87995 0.90150 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 10.32 71.24 0.74 -0.30 16 2 C 0.36 4.55 6.32 29.10 0.18 4.73 16 3 O -0.51 -11.45 16.92 -1.45 -0.02 -11.47 16 4 C -0.13 -1.25 2.40 -11.54 -0.03 -1.28 16 5 H 0.14 0.32 8.05 -2.39 -0.02 0.30 16 6 C -0.10 -1.29 5.19 30.60 0.16 -1.13 16 7 C -0.12 -1.81 5.49 30.59 0.17 -1.64 16 8 C 0.14 2.37 2.45 44.99 0.11 2.48 16 9 H 0.05 1.24 7.57 -2.39 -0.02 1.22 16 10 N -0.71 -12.10 5.08 -442.54 -2.25 -14.35 16 11 C 0.51 13.59 7.79 87.66 0.68 14.27 16 12 O -0.59 -22.39 15.64 -3.02 -0.05 -22.44 16 13 C -0.13 -3.09 5.70 29.84 0.17 -2.92 16 14 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 15 C -0.10 -3.91 5.15 30.59 0.16 -3.76 16 16 C 0.02 0.96 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 20 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.11 -1.13 5.39 30.61 0.17 -0.97 16 26 C -0.11 -1.29 4.80 30.61 0.15 -1.14 16 27 H 0.11 -0.05 7.94 -2.39 -0.02 -0.07 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.42 3.77 8.60 -92.71 -0.80 2.97 16 35 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.04 0.84 7.86 -2.39 -0.02 0.82 16 Total: -1.00 -83.48 381.25 3.75 -79.73 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.12 Total: 6.11 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.63 Total: -25.36 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.96 Total: -73.59 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.07 Total: -33.91 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -83.48 3.75 -79.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887251178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.169 kcal (2) G-P(sol) polarization free energy of solvation -83.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds