Wall clock time and date at job start Tue Mar 31 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.32079 * 2 1 4 4 C 1.54748 * 110.36115 * 237.77718 * 2 1 3 5 5 C 1.53457 * 103.63267 * 217.24715 * 4 2 1 6 6 C 1.52652 * 115.82829 * 129.62010 * 5 4 2 7 7 C 1.53987 * 86.72871 * 93.22480 * 6 5 4 8 8 N 1.46498 * 113.58086 * 139.18505 * 7 6 5 9 9 C 1.34774 * 120.00211 * 156.42208 * 8 7 6 10 10 O 1.21281 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00110 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47327 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47367 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47367 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.52809 * 115.77349 * 230.97307 * 5 4 2 24 24 C 1.53438 * 105.20812 * 0.32067 * 5 4 2 25 25 O 1.44520 * 110.44835 * 122.27827 * 2 1 3 26 26 H 1.08998 * 109.47519 * 182.22213 * 1 2 3 27 27 H 1.09003 * 109.47267 * 302.22501 * 1 2 3 28 28 H 1.09001 * 109.46812 * 62.22032 * 1 2 3 29 29 H 1.09002 * 110.58993 * 98.70921 * 4 2 1 30 30 H 1.09003 * 110.71994 * 335.84789 * 4 2 1 31 31 H 1.09003 * 113.66758 * 338.77018 * 6 5 4 32 32 H 1.08994 * 113.76352 * 207.69530 * 6 5 4 33 33 H 1.08994 * 113.58240 * 269.90090 * 7 6 5 34 34 H 0.97004 * 119.99747 * 336.42857 * 8 7 6 35 35 H 1.08998 * 109.47519 * 59.99858 * 11 9 8 36 36 H 1.09001 * 109.46880 * 299.99851 * 11 9 8 37 37 H 1.08998 * 109.47065 * 59.99424 * 12 11 9 38 38 H 1.09001 * 109.46892 * 299.99688 * 12 11 9 39 39 H 1.08998 * 109.47353 * 59.99778 * 13 12 11 40 40 H 1.09006 * 109.47395 * 300.00034 * 13 12 11 41 41 H 1.08998 * 109.47065 * 59.99602 * 14 13 12 42 42 H 1.09001 * 109.46892 * 299.99866 * 14 13 12 43 43 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 44 44 H 1.09001 * 113.67228 * 152.29034 * 23 5 4 45 45 H 1.09001 * 113.71498 * 21.16606 * 23 5 4 46 46 H 1.08998 * 110.42716 * 141.95365 * 24 5 4 47 47 H 1.09004 * 110.42174 * 264.42792 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0685 -0.7736 -1.2273 5 6 3.3073 -1.4978 -0.6835 6 6 3.3858 -2.9936 -0.9775 7 6 4.2039 -2.6156 -2.2261 8 7 5.3384 -3.5082 -2.4757 9 6 5.8459 -3.6216 -3.7191 10 8 5.3636 -2.9843 -4.6313 11 6 7.0126 -4.5402 -3.9759 12 6 7.3903 -4.4831 -5.4575 13 6 8.5752 -5.4152 -5.7181 14 6 8.9524 -5.3585 -7.1998 15 6 10.1191 -6.2772 -7.4565 16 1 10.5515 -6.8412 -6.6434 17 6 10.6379 -6.3935 -8.7288 18 7 10.1111 -5.7070 -9.7191 19 14 12.0890 -7.5264 -9.0456 20 1 11.5922 -8.8820 -9.3925 21 1 12.8972 -6.9923 -10.1712 22 1 12.9313 -7.6051 -7.8251 23 6 4.5908 -1.3179 -1.4929 24 6 3.3873 -1.1021 0.7968 25 8 2.0349 -0.7232 1.1449 26 1 -0.3634 -1.0268 0.0398 27 1 -0.3634 0.5480 0.8694 28 1 -0.3633 0.4790 -0.9092 29 1 2.3467 -0.0833 -2.0237 30 1 1.3305 -1.4919 -1.5846 31 1 2.4208 -3.4457 -1.2070 32 1 3.9528 -3.5576 -0.2370 33 1 3.5934 -2.4496 -3.1136 34 1 5.7243 -4.0177 -1.7460 35 1 6.7371 -5.5607 -3.7099 36 1 7.8634 -4.2245 -3.3721 37 1 7.6660 -3.4625 -5.7230 38 1 6.5397 -4.7985 -6.0617 39 1 8.2999 -6.4358 -5.4525 40 1 9.4257 -5.0994 -5.1139 41 1 9.2276 -4.3380 -7.4659 42 1 8.1018 -5.6747 -7.8036 43 1 10.4759 -5.7892 -10.6141 44 1 5.4996 -1.4059 -0.8976 45 1 4.5856 -0.4355 -2.1328 46 1 3.7120 -1.9497 1.4002 47 1 4.0647 -0.2583 0.9289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888720179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:02 Heat of formation + Delta-G solvation = -96.127938 kcal Electronic energy + Delta-G solvation = -23073.250475 eV Core-core repulsion = 19641.303137 eV Total energy + Delta-G solvation = -3431.947338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23060 -39.49164 -37.55551 -34.87697 -33.67097 -32.58727 -32.46810 -29.94001 -28.78459 -26.60148 -26.32539 -25.66277 -23.04959 -21.78305 -21.62659 -20.34489 -19.96044 -19.11858 -17.02730 -16.84141 -16.18367 -16.04681 -15.89649 -15.83103 -15.57652 -14.61544 -14.45220 -14.21214 -13.92357 -13.68493 -13.45313 -12.88627 -12.80122 -12.60198 -12.39929 -12.30345 -12.16462 -11.86226 -11.68867 -11.62288 -11.57487 -11.08277 -10.97490 -10.82002 -10.73031 -10.52742 -10.49449 -10.39849 -10.07037 -9.77626 -9.60114 -9.20432 -9.14132 -8.96825 -8.29593 -5.94411 -3.96884 2.70287 3.11635 3.34492 3.40451 3.40862 3.43697 3.92328 4.02571 4.10739 4.41734 4.48264 4.49608 4.61465 4.73179 4.80758 4.91569 5.07476 5.09381 5.17101 5.26345 5.31018 5.33333 5.36689 5.38361 5.39907 5.41125 5.49416 5.59035 5.61541 5.69620 5.72609 5.82166 5.94325 6.15180 6.31361 6.37894 6.44000 6.56392 6.85350 7.03383 7.21297 7.44344 7.75157 7.91260 8.07119 8.27015 8.48941 9.10859 9.66641 11.16884 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.001877 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.685796 B =14910.887928 C =15164.939290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.126 3.874 8 N -0.729 5.729 9 C 0.513 3.487 10 O -0.535 6.535 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.138 4.138 24 C 0.063 3.937 25 O -0.374 6.374 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 10.090 23.878 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.168 4.168 5 C -0.115 4.115 6 C -0.167 4.167 7 C 0.021 3.979 8 N -0.381 5.381 9 C 0.300 3.700 10 O -0.411 6.411 11 C -0.179 4.179 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.177 4.177 24 C -0.014 4.014 25 O -0.293 6.293 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.879 10.538 23.195 31.125 hybrid contribution 1.164 -0.795 -0.054 1.411 sum -16.715 9.743 23.141 30.163 Atomic orbital electron populations 1.21812 0.93165 1.03018 1.02470 1.23047 0.95319 0.95378 0.84960 0.91385 1.22784 0.96208 0.99621 0.98200 1.22288 0.96324 0.96950 0.95961 1.23286 1.01052 0.94965 0.97365 1.22485 0.88175 0.89678 0.97606 1.46098 1.34471 1.46846 1.10712 1.21151 0.84559 0.82376 0.81879 1.90699 1.61034 1.45989 1.43387 1.21805 0.95738 0.99106 1.01298 1.21447 0.99593 1.01337 0.91747 1.21651 0.95154 0.97170 1.00831 1.19100 0.96241 0.97090 0.89346 1.21288 1.15349 1.25328 0.93909 0.92754 1.25049 0.97179 0.95994 0.96388 1.69979 1.41548 1.41461 1.00456 0.86605 0.82692 0.80939 0.77808 1.20716 1.21259 1.19940 1.23420 0.96619 0.99267 0.98362 1.23231 0.84745 0.99873 0.93539 1.89170 1.27584 1.74457 1.38128 0.91714 0.91917 0.91035 0.89924 0.89984 0.90363 0.89226 0.86879 0.76594 0.89150 0.89173 0.91842 0.91832 0.93487 0.93496 0.96602 0.96574 0.93061 0.89302 0.90520 0.88985 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.53 37.16 0.35 -0.49 16 2 C 0.07 0.49 3.94 -25.81 -0.10 0.39 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -0.86 5.99 -25.57 -0.15 -1.01 16 5 C -0.11 -0.76 1.17 -154.34 -0.18 -0.94 16 6 C -0.13 -0.84 7.08 -26.40 -0.19 -1.03 16 7 C 0.13 1.10 4.08 -66.92 -0.27 0.83 16 8 N -0.73 -6.89 5.36 -52.82 -0.28 -7.17 16 9 C 0.51 6.96 7.83 -10.99 -0.09 6.87 16 10 O -0.54 -9.62 15.60 5.56 0.09 -9.54 16 11 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 12 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.14 -1.03 7.18 -26.31 -0.19 -1.22 16 24 C 0.06 0.43 7.07 37.38 0.26 0.69 16 25 O -0.37 -3.34 11.35 -35.23 -0.40 -3.74 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.08 0.53 7.54 -51.93 -0.39 0.14 16 31 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.09 0.47 7.96 -51.93 -0.41 0.06 16 33 H 0.11 1.23 7.50 -51.93 -0.39 0.84 16 34 H 0.40 2.60 8.71 -40.82 -0.36 2.24 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 46 H 0.09 0.54 7.86 -51.93 -0.41 0.13 16 47 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -34.34 378.31 -9.34 -43.68 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.64 Total: -3.22 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.52 Total: -15.80 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.45 Total: -34.05 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.31 Total: -13.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.34 -9.34 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888720179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.448 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds