Wall clock time and date at job start Tue Mar 31 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.32079 * 2 1 4 4 C 1.54748 * 110.36115 * 237.77718 * 2 1 3 5 5 C 1.53457 * 103.63267 * 217.24715 * 4 2 1 6 6 C 1.52652 * 115.82829 * 129.62010 * 5 4 2 7 7 C 1.53987 * 86.72871 * 93.22480 * 6 5 4 8 8 N 1.46498 * 113.58086 * 139.18505 * 7 6 5 9 9 C 1.34774 * 120.00211 * 156.42208 * 8 7 6 10 10 O 1.21281 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00110 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47327 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47367 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47367 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.52809 * 115.77349 * 230.97307 * 5 4 2 24 24 C 1.53438 * 105.20812 * 0.32067 * 5 4 2 25 25 O 1.44520 * 110.44835 * 122.27827 * 2 1 3 26 26 H 1.08998 * 109.47519 * 182.22213 * 1 2 3 27 27 H 1.09003 * 109.47267 * 302.22501 * 1 2 3 28 28 H 1.09001 * 109.46812 * 62.22032 * 1 2 3 29 29 H 1.09002 * 110.58993 * 98.70921 * 4 2 1 30 30 H 1.09003 * 110.71994 * 335.84789 * 4 2 1 31 31 H 1.09003 * 113.66758 * 338.77018 * 6 5 4 32 32 H 1.08994 * 113.76352 * 207.69530 * 6 5 4 33 33 H 1.08994 * 113.58240 * 269.90090 * 7 6 5 34 34 H 0.97004 * 119.99747 * 336.42857 * 8 7 6 35 35 H 1.08998 * 109.47519 * 59.99858 * 11 9 8 36 36 H 1.09001 * 109.46880 * 299.99851 * 11 9 8 37 37 H 1.08998 * 109.47065 * 59.99424 * 12 11 9 38 38 H 1.09001 * 109.46892 * 299.99688 * 12 11 9 39 39 H 1.08998 * 109.47353 * 59.99778 * 13 12 11 40 40 H 1.09006 * 109.47395 * 300.00034 * 13 12 11 41 41 H 1.08998 * 109.47065 * 59.99602 * 14 13 12 42 42 H 1.09001 * 109.46892 * 299.99866 * 14 13 12 43 43 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 44 44 H 1.09001 * 113.67228 * 152.29034 * 23 5 4 45 45 H 1.09001 * 113.71498 * 21.16606 * 23 5 4 46 46 H 1.08998 * 110.42716 * 141.95365 * 24 5 4 47 47 H 1.09004 * 110.42174 * 264.42792 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0685 -0.7736 -1.2273 5 6 3.3073 -1.4978 -0.6835 6 6 3.3858 -2.9936 -0.9775 7 6 4.2039 -2.6156 -2.2261 8 7 5.3384 -3.5082 -2.4757 9 6 5.8459 -3.6216 -3.7191 10 8 5.3636 -2.9843 -4.6313 11 6 7.0126 -4.5402 -3.9759 12 6 7.3903 -4.4831 -5.4575 13 6 8.5752 -5.4152 -5.7181 14 6 8.9524 -5.3585 -7.1998 15 6 10.1191 -6.2772 -7.4565 16 1 10.5515 -6.8412 -6.6434 17 6 10.6379 -6.3935 -8.7288 18 7 10.1111 -5.7070 -9.7191 19 14 12.0890 -7.5264 -9.0456 20 1 11.5922 -8.8820 -9.3925 21 1 12.8972 -6.9923 -10.1712 22 1 12.9313 -7.6051 -7.8251 23 6 4.5908 -1.3179 -1.4929 24 6 3.3873 -1.1021 0.7968 25 8 2.0349 -0.7232 1.1449 26 1 -0.3634 -1.0268 0.0398 27 1 -0.3634 0.5480 0.8694 28 1 -0.3633 0.4790 -0.9092 29 1 2.3467 -0.0833 -2.0237 30 1 1.3305 -1.4919 -1.5846 31 1 2.4208 -3.4457 -1.2070 32 1 3.9528 -3.5576 -0.2370 33 1 3.5934 -2.4496 -3.1136 34 1 5.7243 -4.0177 -1.7460 35 1 6.7371 -5.5607 -3.7099 36 1 7.8634 -4.2245 -3.3721 37 1 7.6660 -3.4625 -5.7230 38 1 6.5397 -4.7985 -6.0617 39 1 8.2999 -6.4358 -5.4525 40 1 9.4257 -5.0994 -5.1139 41 1 9.2276 -4.3380 -7.4659 42 1 8.1018 -5.6747 -7.8036 43 1 10.4759 -5.7892 -10.6141 44 1 5.4996 -1.4059 -0.8976 45 1 4.5856 -0.4355 -2.1328 46 1 3.7120 -1.9497 1.4002 47 1 4.0647 -0.2583 0.9289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888720179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:02 Heat of formation + Delta-G solvation = -118.259583 kcal Electronic energy + Delta-G solvation = -23074.210175 eV Core-core repulsion = 19641.303137 eV Total energy + Delta-G solvation = -3432.907038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86403 -40.46882 -38.26841 -36.60372 -34.66232 -34.48803 -32.99348 -31.52066 -29.60842 -27.46942 -27.04453 -26.89641 -24.55174 -22.73273 -22.31896 -21.72137 -21.28650 -19.71981 -18.42193 -17.85747 -17.66081 -16.87537 -16.64880 -16.57834 -16.43613 -16.39483 -15.52519 -15.20914 -14.94836 -14.54276 -14.47617 -14.07410 -13.75549 -13.60185 -13.44610 -13.30769 -13.24113 -12.88824 -12.82534 -12.77125 -12.49229 -12.33820 -12.25084 -12.14570 -12.11416 -11.63619 -11.40476 -11.37074 -11.34703 -11.30427 -11.14841 -10.69975 -10.60423 -10.54780 -9.99678 -8.18481 -6.30733 1.40555 1.42926 1.53988 1.66410 2.25347 2.42411 2.88718 3.14121 3.37908 3.47506 3.53072 3.79232 3.88439 3.93904 4.07142 4.10706 4.16812 4.22184 4.28247 4.49155 4.58988 4.67480 4.70180 4.70623 4.76830 4.80217 4.83804 4.85391 4.86406 4.89210 4.95784 5.04001 5.09365 5.11742 5.20390 5.23962 5.27455 5.34214 5.39076 5.56653 5.61863 5.78559 5.88410 5.91516 6.25583 6.61334 6.87811 7.32475 7.38859 8.93703 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.001877 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.685796 B =14910.887928 C =15164.939290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.132 4.132 5 C -0.109 4.109 6 C -0.115 4.115 7 C 0.115 3.885 8 N -0.708 5.708 9 C 0.511 3.489 10 O -0.590 6.590 11 C -0.129 4.129 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.132 4.132 24 C 0.061 3.939 25 O -0.396 6.396 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.419 0.581 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.061 0.939 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 8.830 26.501 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.089 0.911 4 C -0.170 4.170 5 C -0.110 4.110 6 C -0.153 4.153 7 C 0.010 3.990 8 N -0.360 5.360 9 C 0.299 3.701 10 O -0.470 6.470 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.171 4.171 24 C -0.015 4.015 25 O -0.316 6.316 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.256 0.744 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.019 9.264 25.891 32.339 hybrid contribution 0.848 -0.351 -0.880 1.271 sum -16.171 8.913 25.011 31.089 Atomic orbital electron populations 1.21821 0.92492 1.02902 1.03118 1.23156 0.95965 0.95408 0.84530 0.91058 1.22796 0.96347 0.99686 0.98144 1.22216 0.95727 0.97051 0.95968 1.23267 1.00785 0.95081 0.96189 1.22554 0.88124 0.90717 0.97653 1.45902 1.33928 1.46267 1.09871 1.21227 0.84497 0.81888 0.82461 1.90691 1.62755 1.48283 1.45316 1.21681 0.96683 1.00808 0.97674 1.21242 0.97624 0.99171 0.95413 1.21451 0.96680 0.98746 0.96454 1.19069 0.94794 0.94818 0.93284 1.21764 1.15965 1.25703 0.94586 0.91530 1.26109 1.00517 0.97722 0.96126 1.70137 1.43392 1.43229 1.01042 0.85369 0.78567 0.78516 0.78104 1.19710 1.20956 1.18305 1.23392 0.97672 0.97899 0.98136 1.23343 0.84110 1.00636 0.93427 1.89150 1.28595 1.74775 1.39032 0.92129 0.91918 0.89820 0.90000 0.89994 0.90399 0.87050 0.89534 0.74365 0.86347 0.86305 0.93982 0.94011 0.92054 0.92041 0.99739 0.99743 0.92874 0.87979 0.91707 0.87649 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.53 71.98 0.69 -0.88 16 2 C 0.07 0.87 3.94 31.19 0.12 0.99 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.13 -1.64 5.99 31.34 0.19 -1.46 16 5 C -0.11 -1.27 1.17 -52.07 -0.06 -1.33 16 6 C -0.12 -1.25 7.08 30.81 0.22 -1.03 16 7 C 0.11 1.88 4.08 45.65 0.19 2.07 16 8 N -0.71 -11.88 5.36 -439.43 -2.36 -14.23 16 9 C 0.51 13.36 7.83 87.66 0.69 14.05 16 10 O -0.59 -21.81 15.60 -3.03 -0.05 -21.85 16 11 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 12 C -0.10 -3.48 4.50 30.59 0.14 -3.34 16 13 C -0.10 -3.91 5.15 30.59 0.16 -3.76 16 14 C 0.02 0.97 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 16 H 0.07 3.63 7.74 -2.92 -0.02 3.60 16 17 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 18 N -0.94 -59.24 13.29 21.45 0.28 -58.95 16 19 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.13 -1.80 7.18 30.87 0.22 -1.58 16 24 C 0.06 0.71 7.07 72.13 0.51 1.22 16 25 O -0.40 -6.52 11.35 -148.98 -1.69 -8.21 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 30 H 0.08 1.01 7.54 -2.39 -0.02 0.99 16 31 H 0.08 0.89 7.89 -2.39 -0.02 0.87 16 32 H 0.11 0.75 7.96 -2.39 -0.02 0.73 16 33 H 0.09 1.94 7.50 -2.39 -0.02 1.92 16 34 H 0.42 3.91 8.71 -92.71 -0.81 3.11 16 35 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 37 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.05 7.89 -2.39 -0.02 1.03 16 46 H 0.11 0.92 7.86 -2.39 -0.02 0.90 16 47 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 Total: -1.00 -77.19 378.31 2.40 -74.78 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.12 Total: 9.74 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.07 Total: -28.19 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.07 Total: -73.18 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.74 Total: -30.06 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.19 2.40 -74.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888720179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.476 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds