Wall clock time and date at job start Tue Mar 31 2020 08:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46970 * 2 1 4 4 C 1.34224 * 117.00240 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99455 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00616 * 179.97438 * 4 3 2 7 7 N 1.46891 * 109.47457 * 174.57515 * 6 4 3 8 8 C 1.46903 * 111.00072 * 299.59134 * 7 6 4 9 9 C 1.50706 * 109.47212 * 297.53939 * 8 7 6 10 10 H 1.08004 * 119.99466 * 4.70105 * 9 8 7 11 11 C 1.37869 * 119.99964 * 184.70017 * 9 8 7 12 12 N 1.31515 * 120.00389 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99707 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46946 * 90.00052 * 13 11 9 15 15 H 1.48503 * 109.47209 * 209.99676 * 13 11 9 16 16 H 1.48499 * 109.47479 * 330.00084 * 13 11 9 17 17 C 1.46899 * 111.00105 * 63.54425 * 7 6 4 18 18 H 1.08991 * 110.67325 * 295.34652 * 17 7 6 19 19 C 1.54888 * 110.91476 * 171.99990 * 17 7 6 20 20 C 1.54271 * 104.19641 * 203.67256 * 19 17 7 21 21 H 1.09000 * 117.76348 * 163.97147 * 20 19 17 22 22 C 1.53870 * 106.59772 * 23.60730 * 20 19 17 23 23 H 1.09004 * 121.32899 * 138.06453 * 22 20 19 24 24 C 1.54270 * 106.60099 * 0.02562 * 22 20 19 25 25 C 1.52991 * 60.87994 * 246.52772 * 22 20 19 26 26 C 1.52999 * 117.46327 * 108.13049 * 25 22 20 27 27 C 1.53005 * 117.46429 * 252.93704 * 25 22 20 28 28 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46992 * 300.00184 * 1 2 3 30 30 H 1.09005 * 109.47246 * 59.99852 * 1 2 3 31 31 H 1.08998 * 109.47167 * 240.00311 * 2 1 3 32 32 H 1.08991 * 109.46893 * 119.99722 * 2 1 3 33 33 H 1.09009 * 109.46605 * 54.57478 * 6 4 3 34 34 H 1.09004 * 109.47320 * 294.57846 * 6 4 3 35 35 H 1.08993 * 109.46910 * 57.54237 * 8 7 6 36 36 H 1.09004 * 109.46926 * 177.54418 * 8 7 6 37 37 H 0.96995 * 120.00272 * 179.97438 * 12 11 9 38 38 H 1.09005 * 110.48768 * 322.34851 * 19 17 7 39 39 H 1.09002 * 110.48803 * 84.99329 * 19 17 7 40 40 H 1.09001 * 110.48676 * 217.71100 * 24 22 20 41 41 H 1.08994 * 110.60316 * 95.12082 * 24 22 20 42 42 H 1.08997 * 109.47184 * 35.13236 * 26 25 22 43 43 H 1.08994 * 109.47290 * 155.13322 * 26 25 22 44 44 H 1.09002 * 109.46965 * 275.13542 * 26 25 22 45 45 H 1.09003 * 109.46949 * 59.99592 * 27 25 22 46 46 H 1.08991 * 109.47671 * 179.97438 * 27 25 22 47 47 H 1.09002 * 109.46825 * 299.99780 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3819 2.8630 0.1293 8 6 5.7655 2.2039 1.3848 9 6 5.2672 3.0170 2.5517 10 1 4.6558 3.8904 2.3793 11 6 5.5919 2.6459 3.8392 12 7 6.3360 1.5820 4.0492 13 14 4.9748 3.6543 5.2856 14 1 3.6594 3.1280 5.7306 15 1 5.9481 3.5635 6.4035 16 1 4.8263 5.0729 4.8725 17 6 5.9796 2.1818 -1.0269 18 1 5.6592 1.1409 -1.0681 19 6 7.5249 2.2793 -0.9879 20 6 7.9524 2.1016 -2.4595 21 1 8.9665 2.3937 -2.7325 22 6 6.7436 2.5077 -3.3205 23 1 6.8662 3.1068 -4.2229 24 6 5.6238 2.9188 -2.3422 25 6 7.2025 1.0483 -3.3228 26 6 6.3159 0.0287 -2.6049 27 6 7.9161 0.5349 -4.5751 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5093 3.5011 0.8363 34 1 3.6642 3.4364 -0.9358 35 1 5.3248 1.2077 1.4215 36 1 6.8513 2.1229 1.4357 37 1 6.5647 1.3212 4.9550 38 1 7.8363 3.2553 -0.6155 39 1 7.9420 1.4836 -0.3707 40 1 4.6533 2.5893 -2.7131 41 1 5.6261 3.9978 -2.1882 42 1 5.2692 0.3058 -2.7297 43 1 6.4829 -0.9610 -3.0299 44 1 6.5641 0.0150 -1.5436 45 1 8.8190 1.1214 -4.7449 46 1 8.1843 -0.5124 -4.4369 47 1 7.2537 0.6302 -5.4355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170764862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:59 Heat of formation + Delta-G solvation = -48.119010 kcal Electronic energy + Delta-G solvation = -25766.960333 eV Core-core repulsion = 22337.094819 eV Total energy + Delta-G solvation = -3429.865515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56814 -39.61252 -36.85864 -35.15468 -32.68099 -31.70896 -31.31426 -28.69791 -28.45595 -27.17048 -26.94207 -25.05344 -23.04494 -21.84718 -20.80689 -19.45146 -19.28331 -18.07453 -17.20136 -16.57699 -16.23742 -15.60802 -15.36771 -14.99932 -14.59810 -14.04613 -13.90002 -13.62434 -13.38911 -13.12924 -12.85506 -12.66801 -12.53369 -12.10911 -12.00607 -11.85066 -11.70794 -11.67499 -11.41428 -11.22466 -11.11824 -10.94617 -10.80550 -10.70017 -10.50603 -10.37250 -10.28113 -10.16075 -9.94549 -9.69595 -9.22889 -9.11092 -9.04192 -8.40468 -7.19336 -5.99892 -4.01648 2.84302 3.22527 3.32114 3.38561 3.42035 3.79408 4.41898 4.64262 4.79745 4.90035 5.02122 5.07526 5.12305 5.22211 5.29897 5.36345 5.39748 5.45097 5.58391 5.69696 5.70314 5.84086 5.85576 5.90166 5.94989 5.97370 6.00922 6.06739 6.08361 6.15341 6.18543 6.22836 6.26888 6.33597 6.44148 6.49451 6.61876 6.67031 6.87097 7.01315 7.31607 7.55872 7.77051 8.01255 8.18889 8.41588 8.52903 9.04753 9.61413 11.10644 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.006079 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.125418 B = 4604.547474 C = 6330.017618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.369 6.369 4 C 0.434 3.566 5 O -0.501 6.501 6 C 0.071 3.929 7 N -0.500 5.500 8 C 0.175 3.825 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.035 3.965 18 H 0.101 0.899 19 C -0.081 4.081 20 C -0.154 4.154 21 H 0.105 0.895 22 C -0.156 4.156 23 H 0.102 0.898 24 C -0.090 4.090 25 C -0.109 4.109 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.021 0.979 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -1.408 -14.579 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.275 3.725 5 O -0.388 6.388 6 C -0.060 4.060 7 N -0.223 5.223 8 C 0.050 3.950 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.072 4.072 18 H 0.118 0.882 19 C -0.118 4.118 20 C -0.173 4.173 21 H 0.123 0.877 22 C -0.175 4.175 23 H 0.120 0.880 24 C -0.128 4.128 25 C -0.109 4.109 26 C -0.176 4.176 27 C -0.166 4.166 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.061 -1.337 -14.400 15.021 hybrid contribution -0.494 -0.431 0.934 1.141 sum -4.555 -1.768 -13.466 14.325 Atomic orbital electron populations 1.21777 0.93306 1.02389 1.03218 1.22858 0.94828 0.81668 1.02133 1.86567 1.26266 1.31323 1.84410 1.26014 0.79895 0.94913 0.71635 1.90561 1.59505 1.43696 1.45025 1.22181 0.90291 0.88970 1.04526 1.62695 1.03035 1.52410 1.04189 1.20064 0.97462 0.94033 0.83420 1.21203 1.32212 1.11519 0.90395 0.92046 1.24949 0.95273 0.95230 0.98903 1.69968 1.37271 1.24962 1.21111 0.86567 0.78442 0.80653 0.82178 1.20828 1.21262 1.19713 1.23579 0.94671 0.99362 0.89626 0.88184 1.21825 0.94852 1.02335 0.92835 1.23790 0.95935 1.03586 0.93948 0.87666 1.23213 0.97648 0.96791 0.99802 0.88009 1.21983 0.96312 1.00816 0.93672 1.21919 1.00957 0.90281 0.97707 1.21640 0.98482 0.96519 1.00980 1.21295 0.99247 1.00799 0.95305 0.90821 0.91544 0.91846 0.91983 0.91478 0.86193 0.88581 0.96162 0.94404 0.92980 0.90123 0.91679 0.92822 0.90227 0.92510 0.93240 0.90497 0.92686 0.92198 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.44 10.22 -39.24 -0.40 -6.84 16 4 C 0.43 8.51 7.30 36.00 0.26 8.78 16 5 O -0.50 -10.99 11.42 -18.76 -0.21 -11.20 16 6 C 0.07 1.33 5.49 -4.98 -0.03 1.31 16 7 N -0.50 -10.53 4.63 -227.13 -1.05 -11.58 16 8 C 0.17 4.54 4.28 -4.97 -0.02 4.52 16 9 C -0.51 -14.25 8.58 -34.44 -0.30 -14.54 16 10 H 0.06 1.64 6.67 -52.48 -0.35 1.29 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.04 0.65 1.38 -65.71 -0.09 0.56 16 18 H 0.10 1.96 1.80 -51.93 -0.09 1.87 16 19 C -0.08 -1.45 4.69 -25.07 -0.12 -1.56 16 20 C -0.15 -2.26 6.76 -88.19 -0.60 -2.85 16 21 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 22 C -0.16 -2.15 6.66 -89.51 -0.60 -2.74 16 23 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 24 C -0.09 -1.38 4.43 -25.06 -0.11 -1.49 16 25 C -0.11 -1.48 2.74 -153.20 -0.42 -1.90 16 26 C -0.12 -1.80 7.95 37.16 0.30 -1.50 16 27 C -0.11 -1.20 9.78 37.16 0.36 -0.83 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.12 2.33 6.52 -51.92 -0.34 1.99 16 34 H 0.10 1.49 6.81 -51.93 -0.35 1.13 16 35 H 0.02 0.59 5.54 -51.93 -0.29 0.30 16 36 H 0.04 1.07 6.89 -51.93 -0.36 0.71 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.26 7.79 -51.93 -0.40 0.86 16 40 H 0.05 0.79 7.83 -51.93 -0.41 0.38 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.89 7.16 -51.93 -0.37 0.51 16 43 H 0.05 0.66 7.72 -51.93 -0.40 0.25 16 44 H 0.08 1.36 5.55 -51.93 -0.29 1.07 16 45 H 0.05 0.55 7.96 -51.93 -0.41 0.14 16 46 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -30.82 358.23 -9.23 -40.05 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.84 Total: 4.53 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.84 Total: -10.85 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.31 Total: -37.67 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.62 Total: -18.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.82 -9.23 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170764862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.066 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds