Wall clock time and date at job start Tue Mar 31 2020 08:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.46970 * 2 1 4 4 C 1.34224 * 117.00240 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99455 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00616 * 179.97438 * 4 3 2 7 7 N 1.46891 * 109.47457 * 174.57515 * 6 4 3 8 8 C 1.46903 * 111.00072 * 299.59134 * 7 6 4 9 9 C 1.50706 * 109.47212 * 297.53939 * 8 7 6 10 10 H 1.08004 * 119.99466 * 4.70105 * 9 8 7 11 11 C 1.37869 * 119.99964 * 184.70017 * 9 8 7 12 12 N 1.31515 * 120.00389 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99707 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46946 * 90.00052 * 13 11 9 15 15 H 1.48503 * 109.47209 * 209.99676 * 13 11 9 16 16 H 1.48499 * 109.47479 * 330.00084 * 13 11 9 17 17 C 1.46899 * 111.00105 * 63.54425 * 7 6 4 18 18 H 1.08991 * 110.67325 * 295.34652 * 17 7 6 19 19 C 1.54888 * 110.91476 * 171.99990 * 17 7 6 20 20 C 1.54271 * 104.19641 * 203.67256 * 19 17 7 21 21 H 1.09000 * 117.76348 * 163.97147 * 20 19 17 22 22 C 1.53870 * 106.59772 * 23.60730 * 20 19 17 23 23 H 1.09004 * 121.32899 * 138.06453 * 22 20 19 24 24 C 1.54270 * 106.60099 * 0.02562 * 22 20 19 25 25 C 1.52991 * 60.87994 * 246.52772 * 22 20 19 26 26 C 1.52999 * 117.46327 * 108.13049 * 25 22 20 27 27 C 1.53005 * 117.46429 * 252.93704 * 25 22 20 28 28 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46992 * 300.00184 * 1 2 3 30 30 H 1.09005 * 109.47246 * 59.99852 * 1 2 3 31 31 H 1.08998 * 109.47167 * 240.00311 * 2 1 3 32 32 H 1.08991 * 109.46893 * 119.99722 * 2 1 3 33 33 H 1.09009 * 109.46605 * 54.57478 * 6 4 3 34 34 H 1.09004 * 109.47320 * 294.57846 * 6 4 3 35 35 H 1.08993 * 109.46910 * 57.54237 * 8 7 6 36 36 H 1.09004 * 109.46926 * 177.54418 * 8 7 6 37 37 H 0.96995 * 120.00272 * 179.97438 * 12 11 9 38 38 H 1.09005 * 110.48768 * 322.34851 * 19 17 7 39 39 H 1.09002 * 110.48803 * 84.99329 * 19 17 7 40 40 H 1.09001 * 110.48676 * 217.71100 * 24 22 20 41 41 H 1.08994 * 110.60316 * 95.12082 * 24 22 20 42 42 H 1.08997 * 109.47184 * 35.13236 * 26 25 22 43 43 H 1.08994 * 109.47290 * 155.13322 * 26 25 22 44 44 H 1.09002 * 109.46965 * 275.13542 * 26 25 22 45 45 H 1.09003 * 109.46949 * 59.99592 * 27 25 22 46 46 H 1.08991 * 109.47671 * 179.97438 * 27 25 22 47 47 H 1.09002 * 109.46825 * 299.99780 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3819 2.8630 0.1293 8 6 5.7655 2.2039 1.3848 9 6 5.2672 3.0170 2.5517 10 1 4.6558 3.8904 2.3793 11 6 5.5919 2.6459 3.8392 12 7 6.3360 1.5820 4.0492 13 14 4.9748 3.6543 5.2856 14 1 3.6594 3.1280 5.7306 15 1 5.9481 3.5635 6.4035 16 1 4.8263 5.0729 4.8725 17 6 5.9796 2.1818 -1.0269 18 1 5.6592 1.1409 -1.0681 19 6 7.5249 2.2793 -0.9879 20 6 7.9524 2.1016 -2.4595 21 1 8.9665 2.3937 -2.7325 22 6 6.7436 2.5077 -3.3205 23 1 6.8662 3.1068 -4.2229 24 6 5.6238 2.9188 -2.3422 25 6 7.2025 1.0483 -3.3228 26 6 6.3159 0.0287 -2.6049 27 6 7.9161 0.5349 -4.5751 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5093 3.5011 0.8363 34 1 3.6642 3.4364 -0.9358 35 1 5.3248 1.2077 1.4215 36 1 6.8513 2.1229 1.4357 37 1 6.5647 1.3212 4.9550 38 1 7.8363 3.2553 -0.6155 39 1 7.9420 1.4836 -0.3707 40 1 4.6533 2.5893 -2.7131 41 1 5.6261 3.9978 -2.1882 42 1 5.2692 0.3058 -2.7297 43 1 6.4829 -0.9610 -3.0299 44 1 6.5641 0.0150 -1.5436 45 1 8.8190 1.1214 -4.7449 46 1 8.1843 -0.5124 -4.4369 47 1 7.2537 0.6302 -5.4355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170764862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:59 Heat of formation + Delta-G solvation = -65.996741 kcal Electronic energy + Delta-G solvation = -25767.735570 eV Core-core repulsion = 22337.094819 eV Total energy + Delta-G solvation = -3430.640751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01725 -40.96846 -38.35044 -36.77882 -34.72602 -32.95415 -32.54244 -30.24779 -29.83822 -28.75411 -28.14471 -26.65800 -24.42430 -23.54064 -22.25659 -20.98336 -20.50929 -19.29876 -18.76071 -18.42934 -17.74439 -17.09760 -17.01080 -16.46216 -16.33151 -15.39262 -15.35704 -14.92979 -14.72157 -14.64451 -14.17300 -14.03470 -13.57561 -13.51939 -13.29774 -13.21585 -13.03354 -12.95958 -12.83575 -12.73892 -12.65422 -12.49099 -12.39431 -12.17401 -12.06348 -11.93440 -11.76760 -11.63574 -11.46974 -11.40824 -11.11071 -10.60571 -10.35684 -10.21559 -8.94293 -8.18830 -6.29095 1.27533 1.39558 1.41299 1.52650 1.83965 2.39420 2.66289 3.10305 3.19524 3.53354 3.62961 3.89071 3.92851 3.97872 4.12038 4.16980 4.18154 4.27597 4.32286 4.43539 4.51926 4.57926 4.65906 4.73953 4.77473 4.84143 4.87088 4.91373 4.96160 4.97443 5.07546 5.09153 5.12435 5.13838 5.17894 5.20814 5.28747 5.31401 5.38985 5.46040 5.53338 5.59935 5.72810 6.04134 6.20983 6.57477 6.87299 6.88265 7.39635 8.92484 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.006079 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.125418 B = 4604.547474 C = 6330.017618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.367 6.367 4 C 0.432 3.568 5 O -0.530 6.530 6 C 0.069 3.931 7 N -0.504 5.504 8 C 0.197 3.803 9 C -0.526 4.526 10 H 0.071 0.929 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.258 1.258 17 C 0.029 3.971 18 H 0.090 0.910 19 C -0.081 4.081 20 C -0.165 4.165 21 H 0.124 0.876 22 C -0.141 4.141 23 H 0.133 0.867 24 C -0.084 4.084 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.105 4.105 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.137 0.863 35 H -0.014 1.014 36 H 0.001 0.999 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -0.120 -16.723 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.283 6.283 4 C 0.275 3.725 5 O -0.420 6.420 6 C -0.061 4.061 7 N -0.226 5.226 8 C 0.071 3.929 9 C -0.564 4.564 10 H 0.089 0.911 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.791 3.209 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.182 1.182 17 C -0.078 4.078 18 H 0.107 0.893 19 C -0.119 4.119 20 C -0.183 4.183 21 H 0.142 0.858 22 C -0.160 4.160 23 H 0.150 0.850 24 C -0.121 4.121 25 C -0.105 4.105 26 C -0.172 4.172 27 C -0.162 4.162 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.003 0.997 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.561 -0.032 -16.569 17.477 hybrid contribution -0.083 -0.923 1.595 1.845 sum -5.644 -0.955 -14.974 16.030 Atomic orbital electron populations 1.21791 0.89828 1.04306 1.03795 1.23180 0.97498 0.80106 1.01499 1.86545 1.24821 1.33095 1.83841 1.26061 0.80528 0.94851 0.71011 1.90568 1.60371 1.44647 1.46399 1.22277 0.88696 0.88835 1.06269 1.62567 1.04928 1.51918 1.03193 1.19553 0.94772 0.92635 0.85922 1.21589 1.31978 1.11704 0.91152 0.91122 1.25925 0.95370 0.96320 1.02154 1.70130 1.38825 1.26933 1.21779 0.85420 0.77846 0.79479 0.78131 1.20065 1.21083 1.18180 1.23668 0.94661 0.99260 0.90230 0.89321 1.21725 0.94897 1.00182 0.95093 1.23726 0.97361 1.05614 0.91579 0.85848 1.23296 0.95652 0.97081 0.99922 0.84962 1.21937 0.97572 1.00713 0.91921 1.22058 1.00337 0.89876 0.98223 1.21540 0.98422 0.98196 0.99049 1.21307 0.99745 1.01115 0.94017 0.88230 0.91721 0.90450 0.91383 0.93506 0.86799 0.84593 0.99657 0.98048 0.92964 0.91586 0.95107 0.91741 0.89538 0.93227 0.91660 0.94136 0.91415 0.91811 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.49 6.19 71.98 0.45 1.93 16 3 O -0.37 -12.70 10.22 -51.36 -0.52 -13.23 16 4 C 0.43 17.29 7.30 71.23 0.52 17.81 16 5 O -0.53 -24.45 11.42 21.95 0.25 -24.20 16 6 C 0.07 2.60 5.49 85.56 0.47 3.07 16 7 N -0.50 -21.90 4.63 -872.49 -4.04 -25.94 16 8 C 0.20 10.87 4.28 85.56 0.37 11.24 16 9 C -0.53 -29.99 8.58 25.60 0.22 -29.77 16 10 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 11 C 0.00 0.00 5.46 84.65 0.46 0.46 16 12 N -0.94 -58.56 13.29 21.44 0.28 -58.27 16 13 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 C 0.03 1.11 1.38 46.21 0.06 1.17 16 18 H 0.09 3.67 1.80 -2.39 0.00 3.66 16 19 C -0.08 -3.07 4.69 31.67 0.15 -2.92 16 20 C -0.16 -4.70 6.76 -9.22 -0.06 -4.76 16 21 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 22 C -0.14 -3.52 6.66 -10.07 -0.07 -3.59 16 23 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 24 C -0.08 -2.42 4.43 31.68 0.14 -2.28 16 25 C -0.10 -2.68 2.74 -51.33 -0.14 -2.82 16 26 C -0.12 -3.48 7.95 71.98 0.57 -2.91 16 27 C -0.10 -1.95 9.78 71.98 0.70 -1.25 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.11 4.42 6.52 -2.38 -0.02 4.40 16 34 H 0.14 3.95 6.81 -2.38 -0.02 3.94 16 35 H -0.01 -0.88 5.54 -2.39 -0.01 -0.89 16 36 H 0.00 0.08 6.89 -2.39 -0.02 0.07 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.03 1.32 7.79 -2.39 -0.02 1.30 16 40 H 0.06 1.73 7.83 -2.39 -0.02 1.71 16 41 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.05 1.54 7.16 -2.39 -0.02 1.52 16 43 H 0.06 1.71 7.72 -2.39 -0.02 1.69 16 44 H 0.04 1.52 5.55 -2.39 -0.01 1.51 16 45 H 0.07 1.12 7.96 -2.39 -0.02 1.10 16 46 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.76 358.23 3.53 -67.23 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.95 Total: 24.13 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.58 Total: -16.64 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.75 Total: -84.21 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.27 Total: -37.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.76 3.53 -67.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170764862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.230 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds